89 results match your criteria: "Kyoto University Graduate School of Biostudies[Affiliation]"

Article Synopsis
  • - This study identifies an ancient SVA_D retrotransposon as the novel cause of occipital horn syndrome (OHS), a genetic disorder linked to copper metabolism due to ATP7A dysfunction.
  • - Researchers detected a 2.8 kb insertion in the patient's gene that disrupted normal mRNA splicing, which was confirmed using long-read sequencing techniques.
  • - Treatment with antisense oligonucleotides restored proper gene expression and reduced copper accumulation in patient cells, highlighting the SVA_D retrotransposon's unexpected role in rare genetic diseases.
View Article and Find Full Text PDF

Force transmission at integrin-based adhesions is important for cell migration and mechanosensing. Talin is an essential focal adhesion (FA) protein that links F-actin to integrins. F-actin constantly moves on FAs, yet how Talin simultaneously maintains the connection to F-actin and transmits forces to integrins remains unclear.

View Article and Find Full Text PDF

Aims: As heart failure (HF) progresses, ATP levels in myocardial cells decrease, and myocardial contractility also decreases. Inotropic drugs improve myocardial contractility but increase ATP consumption, leading to poor prognosis. Kyoto University Substance 121 (KUS121) is known to selectively inhibit the ATPase activity of valosin-containing protein, maintain cellular ATP levels, and manifest cytoprotective effects in several pathological conditions.

View Article and Find Full Text PDF

Force transmission at integrin-based adhesions is important for cell migration and mechanosensing. Talin is an essential focal adhesion (FA) protein that links F-actin to integrins. F-actin constantly moves on FAs, yet how Talin simultaneously maintains the connection to F-actin and transmits forces to integrins remains unclear.

View Article and Find Full Text PDF

Protocol to generate fast-dissociating recombinant antibody fragments for multiplexed super-resolution microscopy.

STAR Protoc

September 2023

Laboratory of Single-Molecule Cell Biology, Kyoto University Graduate School of Biostudies, Kyoto 606-8501, Japan; Department of Pharmacology, Kyoto University Graduate School of Medicine, Kyoto 606-8501, Japan. Electronic address:

Multiplexed high-density label super-resolution microscopy image reconstruction by integrating exchangeable single-molecule localization (IRIS) enables elucidating fine structures and molecular distribution in cells and tissues. However, fast-dissociating binders are required for individual targets. Here, we present a protocol for generating antibody-based IRIS probes from existing antibody sequences.

View Article and Find Full Text PDF

Scale Space Calibrates Present and Subsequent Spatial Learning in Barnes Maze in Mice.

eNeuro

June 2023

Laboratory of Brain Development and Regeneration, Division of Systemic Life Science, Kyoto University Graduate School of Biostudies, Kyoto, 606-8501, Japan

Animals are capable of representing different scale spaces from smaller to larger ones. However, most laboratory animals live their life in a narrow range of scale spaces like homecages and experimental setups, making it hard to extrapolate the spatial representation and learning process in large scale spaces from those in conventional scale spaces. Here, we developed a 3-m diameter Barnes maze (BM3), then explored whether spatial learning in the Barnes maze (BM) is calibrated by scale spaces.

View Article and Find Full Text PDF

Lipopolysaccharide (LPS), an outer component of Gram-negative bacteria, induces a strong response of innate immunity via microglia, which triggers a modulation of the intrinsic excitability of neurons. However, it is unclear whether the modulation of neurophysiological properties is similar among neurons. Here, we found the hypoexcitability of layer 5 (L5) pyramidal neurons after exposure to LPS in the medial prefrontal cortex (mPFC) of juvenile rats.

View Article and Find Full Text PDF
Article Synopsis
  • The IRIS technique enables advanced super-resolution imaging by using fast-exchanging fluorescent probes that can label many targets at once.
  • Previous methods for creating specific probes were time-consuming, but a new mutagenesis strategy has been developed to streamline this process across various antibody sequences.
  • The research successfully created IRIS probes from several antibody types, allowing for detailed visualization of proteins in neurons, enhancing the ability to study small synaptic connections.
View Article and Find Full Text PDF
Article Synopsis
  • Acute kidney injury (AKI) is a critical condition that often leads to chronic kidney disease or other organ dysfunction, and currently, no established treatments exist.
  • This study explored the protective effects of a substance called KUS121, targeting the renoprotection of kidney cells under stress conditions, using both lab (in vitro) and animal (in vivo) tests.
  • Results showed that KUS121 improved cell survival, reduced apoptosis, and decreased kidney damage from ischemia-reperfusion injury, indicating its potential as a new treatment for AKI.
View Article and Find Full Text PDF

Tuberous sclerosis complex (TSC) is a multisystem developmental disorder characterized by hamartomas in various organs, such as the brain, lungs, and kidneys. Epilepsy, along with autism and intellectual disability, is one of the neurologic impairments associated with TSC that has an intimate relationship with developmental outcomes and quality of life. Sustained activation of the mammalian target of rapamycin (mTOR) via or mutations is known to be involved in the onset of epilepsy in TSC.

View Article and Find Full Text PDF

Oscillatory expression of Ascl1 in oligodendrogenesis.

Gene Expr Patterns

September 2021

Institute for Frontier Life and Medical Sciences, Kyoto University, Kyoto, 606-8507, Japan; Kyoto University Graduate School of Biostudies, Kyoto, 606-8501, Japan; Kyoto University Graduate School of Medicine, Kyoto, 606-8507, Japan; Institute for Integrated Cell-Material Sciences, Kyoto University, Kyoto, 606-8501, Japan; RIKEN Center for Brain Science, Wako, 351-0198, Japan. Electronic address:

The proneural gene Ascl1 promotes formation of both neurons and oligodendrocytes from neural stem cells (NSCs), but it remains to be analyzed how its different functions are coordinated. It was previously shown that Ascl1 enhances proliferation of NSCs when its expression oscillates but induces differentiation into transit-amplifying precursor cells and neurons when its expression is up-regulated and sustained. By time-lapse imaging and immunohistological analyses, we found that Ascl1 expression oscillated in proliferating oligodendrocyte precursor cells (OPCs) at lower levels than in transit-amplifying precursor cells and was repressed when OPCs differentiated into mature oligodendrocytes.

View Article and Find Full Text PDF

Paradoxical activation of c-Src as a drug-resistant mechanism.

Cell Rep

March 2021

Department of Pharmacology, Kyoto University Graduate School of Medicine, Kyoto, Japan; Laboratory of Single-Molecule Cell Biology, Kyoto University Graduate School of Biostudies, Kyoto, Japan. Electronic address:

ATP-competitive inhibitors have been developed as promising anti-cancer agents. However, drug-resistance frequently occurs, and the underlying mechanisms are not fully understood. Here, we show that the activation of c-Src and its downstream phosphorylation cascade can be paradoxically induced by Src-targeted and RTK-targeted kinase inhibitors.

View Article and Find Full Text PDF

Hop flower extracts mitigate retinal ganglion cell degeneration in a glaucoma mouse model.

Sci Rep

December 2020

Department of Ophthalmology and Visual Sciences, Kyoto University Graduate School of Medicine, 54 Kawahara-cho, Shogoin, Sakyo-ku, Kyoto, Kyoto, 606-8507, Japan.

In glaucoma, retinal ganglion cells degenerate progressively, leading to visual field loss and blindness. Presently, the only treatment strategy for glaucoma is lowering the intraocular pressure. However, there are cases in which patients develop progressive visual field loss even though their intraocular pressures are within normal ranges.

View Article and Find Full Text PDF

The significance of gene expression dynamics in neural stem cell regulation.

Proc Jpn Acad Ser B Phys Biol Sci

July 2021

Institute for Frontier Life and Medical Sciences, Kyoto University.

Neural stem cells (NSCs) actively proliferate and generate neurons and glial cells (active state) in the embryonic brain, whereas they are mostly dormant (quiescent state) in the adult brain. The expression dynamics of Hes1 are different between active and quiescent NSCs. In active NSCs, Hes1 expression oscillates and periodically represses the expression of proneural genes such as Ascl1, thereby driving their oscillations.

View Article and Find Full Text PDF

In glaucoma, retinal ganglion cells are damaged, leading to the progressive constriction of the visual field. We have previously shown that the valosin-containing protein (VCP) modulators, Kyoto University Substance (KUS)121 and KUS187, prevent the death of retinal ganglion cells in animal models of glaucoma, including the one generated by N-methyl-D-aspartate (NMDA)-induced neurotoxicity. KUSs appeared to avert endoplasmic reticulum (ER) stress by maintaining ATP levels, resulting in the protection of ganglion cells from cell death.

View Article and Find Full Text PDF

Oscillatory expression of Hes1 regulates cell proliferation and neuronal differentiation in the embryonic brain.

Development

February 2020

Institute for Frontier Life and Medical Sciences, Kyoto University, Shogoin-Kawahara, Sakyo-ku, Kyoto 606-8507, Japan

Article Synopsis
  • The study investigates the role of Hes1 oscillations in neural development by creating two types of knock-in mice with altered Hes1 gene lengths.
  • Type-1 mice, which had shortened Hes1 oscillations, exhibited significantly smaller brains, reduced neural progenitor cell (NPC) proliferation, and increased cell death compared to wild-type mice.
  • In contrast, type-2 mutant mice appeared normal, suggesting that maintaining robust Hes1 oscillations is crucial for proper brain development and neurogenesis timing.
View Article and Find Full Text PDF

Kyoto University Substance (KUS) 121, an ATPase inhibitor of valosin-containing protein, is a novel neuroprotectant. We tested the safety and effectiveness of KUS121 in patients with acute central retinal artery occlusion (CRAO). We conducted an investigator-initiated, first-in-humans, phase 1/2 clinical trial.

View Article and Find Full Text PDF

Growth impairment in mucopolysaccharidoses (MPSs) is an unresolved issue as it is resistant to enzyme replacement therapy (ERT) and growth hormone therapy. C-type natriuretic peptide (CNP) is a promising agent that has growth-promoting effects. Here we investigate the effects of CNP on growth impairment of MPSs using Gusbmps-2J mice, a model for MPS type VII, with combination therapy of CNP and ERT by hydrodynamic gene delivery.

View Article and Find Full Text PDF

The mechanism by which the cytosolic protein Zap70 physically interacts with and phosphorylates its substrate, the transmembrane protein LAT, upon T cell receptor (TCR) stimulation remains largely obscure. In this study, we found that the pharmacological inhibition of formins, a major class of actin nucleators, suppressed LAT phosphorylation by Zap70, despite TCR stimulation-dependent phosphorylation of Zap70 remaining intact. High-resolution imaging and three-dimensional image reconstruction revealed that localization of phosphorylated Zap70 to the immune synapse (IS) and subsequent LAT phosphorylation are critically dependent on formin-mediated actin polymerization.

View Article and Find Full Text PDF

Notch signaling regulates the maintenance of neural stem/progenitor cells by cell-cell interactions. The components of Notch signaling exhibit dynamic expression. Notch signaling effector Hes1 and the Notch ligand Delta-like1 (Dll1) are expressed in an oscillatory manner in neural stem/progenitor cells.

View Article and Find Full Text PDF

No effective treatment is yet available to reduce infarct size and improve clinical outcomes after acute myocardial infarction by enhancing early reperfusion therapy using primary percutaneous coronary intervention. The study showed that Kyoto University Substance 121 (KUS121) reduced endoplasmic reticulum stress, maintained adenosine triphosphate levels, and ameliorated the infarct size in a murine cardiac ischemia and reperfusion injury model. The study confirmed the cardioprotective effect of KUS121 in a porcine ischemia and reperfusion injury model.

View Article and Find Full Text PDF

Cells change direction of migration by sensing rigidity of environment and traction force, yet its underlying mechanism is unclear. Here, we show that tip actin barbed ends serve as an active "force sensor" at the leading edge. We established a method to visualize intracellular single-molecule fluorescent actin through an elastic culture substrate.

View Article and Find Full Text PDF

Regulation of active and quiescent somatic stem cells by Notch signaling.

Dev Growth Differ

January 2020

Institute for Frontier Life and Medical Sciences, Kyoto University, Kyoto, Japan.

Somatic stem/progenitor cells actively proliferate and give rise to different types of mature cells (active state) in embryonic tissues while they are mostly dormant (quiescent state) in many adult tissues. Notch signaling is known to regulate both active and quiescent states of somatic stem cells, but how it regulates these different states is unknown. Recent studies revealed that the Notch effector Hes1 is expressed differently during the active and quiescent states during neurogenesis and myogenesis: high in the quiescent state and oscillatory in the active state.

View Article and Find Full Text PDF

RECK in Neural Precursor Cells Plays a Critical Role in Mouse Forebrain Angiogenesis.

iScience

September 2019

Department of Molecular Oncology, Kyoto University Graduate School of Medicine, Yoshida-Konoe-cho, Sakyo-ku, Kyoto 606-8501, Japan. Electronic address:

RECK in neural precursor cells (NPCs) was previously found to support Notch-dependent neurogenesis in mice. On the other hand, recent studies implicate RECK in endothelial cells (ECs) in WNT7-triggered canonical WNT signaling essential for brain angiogenesis. Here we report that RECK in NPCs is also critical for brain angiogenesis.

View Article and Find Full Text PDF

Reduced adenosine triphosphate (ATP) levels in ischemic stroke constitute an upstream contributor to neuronal cell death. We have recently created a small chemical, named Kyoto University Substance 121 (KUS121), which can reduce cellular ATP consumption. In this study, we examined whether KUS121 has neuroprotective effects in rodent cerebral ischemia models.

View Article and Find Full Text PDF