146 results match your criteria: "Kochi Institute for Core Sample Research[Affiliation]"
PLoS One
August 2022
Graduate School of Frontier Sciences, The University of Tokyo, Kashiwa, Chiba, Japan.
Proc Natl Acad Sci U S A
July 2022
Kochi Institute for Core Sample Research, Japan Agency for Marine-Earth Science and Technology (X-star, JAMSTEC), Kochi 739-8502, Japan.
Nearly all frictional interfaces strengthen as the logarithm of time when sliding at ultra-low speeds. Observations of also logarithmic-in-time growth of interfacial contact area under such conditions have led to constitutive models that assume that this frictional strengthening results from purely time-dependent, and slip-insensitive, contact-area growth. The main laboratory support for such strengthening has traditionally been derived from increases in friction during "load-point hold" experiments, wherein a sliding interface is allowed to gradually self-relax down to subnanometric slip rates.
View Article and Find Full Text PDFFront Microbiol
June 2022
Department of Earth and Planetary Science, The University of Tokyo, Bunkyo City, Japan.
Chemosynthetic organisms flourish around deep-sea hydrothermal vents where energy-rich fluids are emitted from metal sulfide chimneys. However, microbial life hosted in mineral assemblages in extinct chimneys lacking fluid venting remains largely unknown. The interior of extinct chimneys remains anoxic where the percolation of oxygenated seawater is limited within tightly packed metal sulfide grains.
View Article and Find Full Text PDFSci Rep
June 2022
Faculty of Symbiotic Systems Science, Cluster of Science and Technology, Fukushima University, 1 Kanayagawa, Fukushima, 960-1296, Japan.
Science
February 2023
Department of Natural History Sciences, Hokkaido University, Sapporo 001-0021, Japan.
Carbonaceous meteorites are thought to be fragments of C-type (carbonaceous) asteroids. Samples of the C-type asteroid (162173) Ryugu were retrieved by the Hayabusa2 spacecraft. We measured the mineralogy and bulk chemical and isotopic compositions of Ryugu samples.
View Article and Find Full Text PDFNat Commun
January 2022
Department of Earth, Planetary and Space Sciences, University of California Los Angeles, Los Angeles, CA, 90095, USA.
A fourth of the global seabed sediment volume is buried at depths where temperatures exceed 80 °C, a previously proposed thermal barrier for life in the subsurface. Here, we demonstrate, utilizing an extensive suite of radiotracer experiments, the prevalence of active methanogenic and sulfate-reducing populations in deeply buried marine sediment from the Nankai Trough subduction zone, heated to extreme temperature (up to ~120 °C). The small microbial community subsisted with high potential cell-specific rates of energy metabolism, which approach the rates of active surface sediments and laboratory cultures.
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January 2022
Faculty of Symbiotic Systems Science, Cluster of Science and Technology, Fukushima University, 1 Kanayagawa, Fukushima, 960-1296, Japan.
Strontium-90 is a major radioactive nuclide released by nuclear accidents and discharge waste. Input of such radioactive nuclide into earth surface environment causes potential threat of long-term internal exposure when taken up by organism. Rapid and precise measurement of Sr in variety of environmental sample is important to understand the distribution and dynamics of Sr in the local environment after the accident and to assess the effect of radioactive nuclide inputs on bodies.
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September 2021
Research Center for Regional Disaster Management, Iwate University, Morioka, Japan.
Hydrogen isotopes have been widely used as powerful tracers to understand the origin of terrestrial water and the water circulation between the surface and the deep interior of the Earth. However, further quantitative understanding is hindered due to a lack of observations about the changes in D/H ratios of a slab during subduction. Here, we report hydrogen isotope data of olivine-hosted melt inclusions from active volcanoes with variable depths (90‒550 km) to the subducting Pacific slab.
View Article and Find Full Text PDFPeerJ
August 2021
Graduate School of Fisheries and Environmental Sciences, Nagasaki University, Nagasaki, Nagasaki, Japan.
The dynamics of potential oxygen consumption at the sediment surface in a seasonally hypoxic bay were monitored monthly by applying a tetrazolium dye (2-(4-iodophenyl)-3-(4-nitrophenyl)-5-phenyl-2H-tetrazolium chloride [INT]) reduction assay to intact sediment core samples for two consecutive years (2012-2013). Based on the empirically determined correlation between INT reduction (INT-formazan formation) and actual oxygen consumption of sediment samples, we inferred the relative contribution of biological and non-biological (chemical) processes to the potential whole oxygen consumption in the collected sediment samples. It was demonstrated that both potentials consistently increased and reached a maximum during summer hypoxia in each year.
View Article and Find Full Text PDFMicrobes Environ
September 2021
Geomicrobiology Group, Kochi Institute for Core Sample Research, Japan Agency for Earth-Marine Science and Technology (JAMSTEC).
Microbial cell counting provides essential information for the study of cell abundance profiles and biogeochemical interactions with the surrounding environments. However, it often requires labor-intensive and time-consuming processes, particularly for subseafloor sediment samples, in which non-cell particles are abundant. We developed a rapid and straightforward method for staining microbial intracellular DNA by SYBR Green I (SYBR-I) to enumerate cells by flow cytometry (FCM).
View Article and Find Full Text PDFInt J Syst Evol Microbiol
August 2021
Kochi Institute for Core Sample Research, Japan Agency for Marine-Earth Science and Technology (JAMSTEC), Monobe B200, Nankoku, Kochi 783-8502, Japan.
Three highly alkaliphilic bacterial strains designated as A1, H1 and B1 were isolated from two highly alkaline springs at The Cedars, a terrestrial serpentinizing site. Cells from all strains were motile, Gram-negative and rod-shaped. Strains A1, H1 and B1 were mesophilic (optimum, 30 °C), highly alkaliphilic (optimum, pH 11) and facultatively autotrophic.
View Article and Find Full Text PDFNat Commun
July 2021
Graduate School of Engineering, Osaka University, Suita, Osaka, Japan.
Sci Rep
June 2021
Graduate School of Human Development and Environment, Kobe University, Kobe, Japan.
Sci Rep
February 2021
Graduate School of Human Development and Environment, Kobe University, Kobe, Japan.
The combination of high-throughput sequencing technology and environmental DNA (eDNA) analysis has the potential to be a powerful tool for comprehensive, non-invasive monitoring of species in the environment. To understand the correlation between the abundance of eDNA and that of species in natural environments, we have to obtain quantitative eDNA data, usually via individual assays for each species. The recently developed quantitative sequencing (qSeq) technique enables simultaneous phylogenetic identification and quantification of individual species by counting random tags added to the 5' end of the target sequence during the first DNA synthesis.
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January 2021
Kochi Institute for Core Sample Research (KOCHII), Institute for Extra-cutting-edge Science and Technology Avant-garde Research (X-star), Agency for Marine-Earth Science and Technology, Nankoku, 783-8502, Japan.
Submarine debris flows are mass movement processes on the seafloor, and are geohazards for seafloor infrastructure such as pipelines, communication cables, and submarine structures. Understanding the generation and run-out behavior of submarine debris flows is thus critical for assessing the risk of such geohazards. The rheological properties of seafloor sediments are governed by factors including sediment composition, grain size, water content, and physico-chemical conditions.
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December 2020
Kochi Institute for Core Sample Research (KOCHI), X-star, JAMSTEC (Japan Agency for Marine-Earth Science and Technology), Nankoku, Japan.
Microfossils are a powerful tool in earth sciences, and they have been widely used for the determination of geological age and in paleoenvironmental studies. However, the identification of fossil species requires considerable time and labor by experts with extensive knowledge and experience. In this study, we successfully automated the acquisition of microfossil data using an artificial intelligence system that employs a computer-controlled microscope and deep learning methods.
View Article and Find Full Text PDFScience
December 2020
Center for Marine Environmental Sciences (MARUM), University of Bremen, Bremen, Germany.
Microorganisms in marine subsurface sediments substantially contribute to global biomass. Sediments warmer than 40°C account for roughly half the marine sediment volume, but the processes mediated by microbial populations in these hard-to-access environments are poorly understood. We investigated microbial life in up to 1.
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November 2020
Kochi Institute for Core Sample Research, Japan Agency for Marine-Earth Science and Technology (JAMSTEC), Monobe B200, Nankoku, Kochi, 783-8502, Japan.
Weathered granite of ion-adsorption rare earth elements (REEs) ore collected at Jiangxi Province, China was investigated to identify the minerals abundant in REEs. The analyses of scanning electron microscopy (SEM)-energy dispersive spectrometry (EDS) and laser ablation inductively coupled plasma mass spectrometry (LA-ICP-MS) for individual mineral particles of the weathered granite showed that kaolinitic particles formed by K-feldspar weathering contained large amounts of REEs. Scanning transmission electron microscopy (STEM)-EDS analyses revealed that the kaolinitic particles were mainly composed of kaolinite, illite and hematite.
View Article and Find Full Text PDFAnal Chem
December 2020
Faculty of Symbiotic Systems Science, Cluster of Science and Technology, Fukushima University, 1 Kanayagawa, Fukushima 960-1296, Japan.
Thermal ionization mass spectrometry (TIMS) was used to directly quantify an ultratrace of radioactive Sr in microliter droplet samples. No chemical separation was required in removing isobaric interferences on = 90 such as Zr and organic molecules in the mass spectrum because the difference in evaporation and ionization (emission) temperature among organic molecules, Zr and Sr, allows us to control the emission manner and significantly suppress the isobaric interferences. Direct quantification was achieved by improving the intercalibration of Faraday cups and ion counting in an isotope dilution (ID) method.
View Article and Find Full Text PDFProc Natl Acad Sci U S A
November 2020
Kochi Institute for Core Sample Research, Japan Agency for Marine-Earth Science and Technology (JAMSTEC), Nankoku, 783-8502 Kochi, Japan;
Microbial life in marine sediment contributes substantially to global biomass and is a crucial component of the Earth system. Subseafloor sediment includes both aerobic and anaerobic microbial ecosystems, which persist on very low fluxes of bioavailable energy over geologic time. However, the taxonomic diversity of the marine sedimentary microbial biome and the spatial distribution of that diversity have been poorly constrained on a global scale.
View Article and Find Full Text PDFNat Commun
July 2020
Kochi Institute for Core Sample Research, Japan Agency for Marine-Earth Science and Technology (JAMSTEC), 200 Otsu, Monobe, Nankoku, Kochi, 783-8502, Japan.
Sparse microbial populations persist from seafloor to basement in the slowly accumulating oxic sediment of the oligotrophic South Pacific Gyre (SPG). The physiological status of these communities, including their substrate metabolism, is previously unconstrained. Here we show that diverse aerobic members of communities in SPG sediments (4.
View Article and Find Full Text PDFMicrobes Environ
March 2021
Marine Works Japan LTD.
Fluorescence in situ hybridization (FISH) is a widely used molecular technique in microbial ecology. However, the non-specific adsorption of fluorescent probes and resulting high intensity of background signals from mineral particles hampers the specific detection of microbial cells in grain-rich environmental samples, such as subseafloor sediments. We herein demonstrated that a new buffer composition containing EDTA efficiently reduced the adsorption of probes without compromising the properties of the FISH-based probing of microbes.
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June 2020
Department of Immunology and Rheumatology, Nagasaki University Graduate School of Biomedical Sciences, Nagasaki, Japan.
Sci Adv
May 2020
Department of Chemistry, Toho University, Funabashi, Chiba 274-8510, Japan.
The ~180-km-diameter Chicxulub peak-ring crater and ~240-km multiring basin, produced by the impact that terminated the Cretaceous, is the largest remaining intact impact basin on Earth. International Ocean Discovery Program (IODP) and International Continental Scientific Drilling Program (ICDP) Expedition 364 drilled to a depth of 1335 m below the sea floor into the peak ring, providing a unique opportunity to study the thermal and chemical modification of Earth's crust caused by the impact. The recovered core shows the crater hosted a spatially extensive hydrothermal system that chemically and mineralogically modified ~1.
View Article and Find Full Text PDFNat Commun
April 2020
Earth-Life Science Institute, Tokyo Institute of Technology, 2-12-1 Ookayama, Meguro, Tokyo, 152-8550, Japan.
Understanding the origin of organic material on Mars is a major issue in modern planetary science. Recent robotic exploration of Martian sedimentary rocks and laboratory analyses of Martian meteorites have both reported plausible indigenous organic components. However, little is known about their origin, evolution, and preservation.
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