889 results match your criteria: "John P. Hussman Institute for Human Genomics[Affiliation]"

The purpose of the current study was to assess parent perceptions and experiences of genetic testing, as well as barriers for not undergoing testing in a sample of families of children with hearing loss. A 44-item questionnaire, The Parent Perception of Genetic Testing Questionnaire developed by the research study team was administered. Participants were recruited from a pediatric otolaryngology/audiology practice and social media.

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  • ε4 is the most significant genetic risk factor for Alzheimer's disease (AD), with about half of AD patients having at least one ε4 allele.
  • Researchers found that the African-specific A allele of rs10423769 significantly reduces the AD risk associated with ε4 homozygotes by roughly 75%.
  • The protective variant is located in a specific region of chromosome 19, demonstrating differences at the structural and DNA methylation levels compared to non-protective variants, and emphasizing the need for diverse ancestry representation in AD studies.
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  • Epigenetic clocks measure aging rates through DNA methylation patterns and could help predict age-related diseases like Alzheimer's, but lack validation in genetically diverse groups.* -
  • A study evaluated these clocks in 621 Alzheimer's patients and controls from African American, Hispanic, and white backgrounds, revealing reduced accuracy in those with mixed ancestries, particularly with substantial African heritage.* -
  • The findings indicate that methylation-related genetic variations (meQTL) are more common in individuals of African ancestry, highlighting the need for improvements to make these clocks more effective across diverse populations.*
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To determine the genetic causes of sensorineural hearing loss (SNHL) associated with inner ear anomalies, 11 unrelated Turkish individuals diagnosed with SNHL and an inner ear anomaly using temporal bone computed tomography and inner ear magnetic resonance imaging underwent exome or whole genome sequencing to identify underlying genetic defects. None of the individuals was diagnosed with a recognized syndrome. Four of the 11 probands were homozygous for variants, , , , and .

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Metaproteomics reveals diet-induced changes in gut microbiome function according to Crohn's disease location.

Microbiome

October 2024

Department of Diagnostics and Laboratory Medicine, Microbiology and Diagnostic Immunology Unit, Microbiomics and Immunology Unit, Rheumatology and Infectious Disease Research Area, Human Microbiome Unit, Bambino Gesù Children's Hospital, IRCCS, Rome, Italy.

Article Synopsis
  • Crohn's disease (CD) causes chronic inflammation in the intestines, and diet plays a crucial role in shaping the gut microbiome, which might impact CD symptoms.
  • A study investigated how a high-fiber, low-fat diet (Mi-IBD) affects gut microbiome function in CD patients over 8 weeks, comparing those who received diet counseling and catered meals.
  • The results showed that the Mi-IBD diet improved carbohydrate metabolism in CD patients, with notable differences in microbial function based on whether the disease affected the ileum or colon, benefiting those with colonic involvement the most.
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  • Alzheimer's disease (AD) is a common hereditary disorder affecting the elderly, and this study explored its genetic associations using whole genome sequencing data from 13,371 individuals of various ancestries.
  • The researchers found significant genetic variants related to AD, including those at APOE, BIN1, and a specific haplotype on chromosome 14 (PSEN1) in Hispanic populations, alongside variants in LINC00320 in Black individuals.
  • The study highlights the importance of both pooled and subgroup-specific analyses in understanding the complex genetic architecture of AD, revealing rare non-coding variants in the promoter of TOMM40 unrelated to APOE.
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AMH regulates a mosaic population of AMHR2-positive cells in the ovarian surface epithelium.

J Biol Chem

November 2024

Sylvester Comprehensive Cancer Center, University of Miami Miller School of Medicine, Miami, Florida, USA; Department of Radiation Oncology, University of Miami Miller School of Medicine, Miami, Florida, USA. Electronic address:

The function and homeostasis of the mammalian ovary depend on complex paracrine interactions between multiple cell types. Using primary mouse tissues and isolated cells, we showed in vitro that ovarian follicles secrete factor(s) that suppresses the growth of ovarian epithelial cells in culture. Most of the growth suppressive activity was accounted for by Anti-Mullerian Hormone/Mullerian Inhibitory Substance (AMH/MIS) secreted by granulosa cells of the follicles, as determined by immune depletion experiments.

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  • * The Undiagnosed Diseases Network (UDN) aims to improve diagnosis rates and research participation among these groups, but a review of 2235 participants shows underrepresentation of Hispanic and Black non-Hispanic individuals compared to the broader U.S. population.
  • * Diagnosis rates varied by ethnicity, with higher rates for Asian non-Hispanic (39.5%) and Hispanic (35.3%) groups, while White non-Hispanic participants had the lowest at 26.8%; however, differences in diagnostic yields were not significant when controlling for factors like age and disease phenotype. *
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  • The study investigates how cerebral amyloid angiopathy (CAA) affects recovery from ischemic stroke using a 5xFAD mouse model, hypothesizing that amyloid-beta buildup leads to worse outcomes by impairing the blood-brain barrier (BBB).
  • Findings reveal that CAA worsens stroke effects, resulting in narrowed BBB microvessels, decreased cerebral blood flow, and hindered tissue recovery, alongside different gene expression patterns in endothelial cells and neural progenitor cells in the hippocampus.
  • Experiments indicate that disrupting the CXCL12-PIK3C2A-CREB3L2 pathway negatively impacts neurogenesis, but activating the PI3K pathway can restore it
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Somatic instability of the FGF14-SCA27B GAA•TTC repeat reveals a marked expansion bias in the cerebellum.

Brain

October 2024

Department of Neurology and Neurosurgery, Montreal Neurological Hospital and Institute, McGill University, Montreal, QC H3A 2B4, Canada.

Article Synopsis
  • Spinocerebellar ataxia 27B (SCA27B) is a disease that affects balance and coordination, caused by a genetic change in a specific part of a gene called FGF14.
  • Research shows that most brain damage from this disease happens mainly in the cerebellum, which controls movement.
  • In a study of blood samples and brain tissue, scientists found that the genetic change was mostly stable over time, but it exhibited more growth in the cerebellum than in other brain areas, helping to explain why SCA27B mainly affects that part of the brain.
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  • Researchers are trying to find out how genetics can help protect the brain from Alzheimer's disease (AD) as there aren't many treatments available.
  • They studied a group of 946 Amish people aged 76-95 to look for specific genetic markers that might be linked to better brain function.
  • They discovered over 100 genetic markers related to cognitive health, with one important marker on chromosome 2 that affects certain brain genes, which might help in finding new treatments.
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The GENESIS database and tools: A decade of discovery in Mendelian genomics.

Exp Neurol

December 2024

Dr. John T. Macdonald Foundation Department of Human Genetics and John P. Hussman Institute for Human Genomics, University of Miami Miller School of Medicine, Miami, FL, USA. Electronic address:

Article Synopsis
  • Human genetics research has made a lot of progress in finding out what causes diseases over the last ten years, thanks to sharing data and working together.
  • The GENESIS platform helps scientists who may not know a lot about bioinformatics to analyze genetics data and discover new disease genes.
  • With over 20,000 datasets from rare disease patients, GENESIS has contributed to discovering more than 100 new genes and helped solve many cases for patients with rare diseases.
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Identifying X-chromosome variants associated with age-related macular degeneration.

Hum Mol Genet

December 2024

Population and Quantitative Health Sciences, Case Western Reserve University, 2103 Cornell Road, Cleveland, OH 44106, United States.

Purpose: In genome-wide association studies (GWAS), X chromosome (ChrX) variants are often not investigated. Sex-specific effects and ChrX-specific quality control (QC) are needed to examine these effects. Previous GWAS identified 52 autosomal variants associated with age-related macular degeneration (AMD) via the International AMD Genomics Consortium (IAMDGC), but did not analyze ChrX.

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Governing new technologies that stop biological time: Preparing for prolonged biopreservation of human organs in transplantation.

Am J Transplant

September 2024

NSF Engineering Research Center for Advanced Technologies for Preservation of Biological Systems (ATP-Bio), Minneapolis, MN, USA; Department of Mechanical and Biomedical Engineering, University of Minnesota, Minnesota, MN, USA; Institute for Engineering in Medicine, University of Minnesota, Minnesota, MN, USA.

Time limits on organ viability from retrieval to implantation shape the US system for human organ transplantation. Preclinical research has demonstrated that emerging biopreservation technologies can prolong organ viability, perhaps indefinitely. These technologies could transform transplantation into a scheduled procedure without geographic or time constraints, permitting organ assessment and potential preconditioning of the recipients.

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A major driver of neuronal hyperexcitability is dysfunction of K channels, including voltage-gated KCNQ2/3 channels. Their hyperpolarized midpoint of activation and slow activation and deactivation kinetics produce a current that regulates membrane potential and impedes repetitive firing. Inherited mutations in KCNQ2 and KCNQ3 are linked to a wide spectrum of neurodevelopmental disorders (NDDs), ranging from benign familial neonatal seizures to severe epileptic encephalopathies and autism spectrum disorders.

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  • Hispanic/Latino populations, particularly Puerto Ricans, are underrepresented in Alzheimer Disease (AD) genetics research, prompting a study to identify new AD risk loci in this group.
  • The study involved Whole Genome Sequencing and analyzed data from 648 Puerto Ricans, adjusting for various factors to ensure accurate results and inferring local ancestry.
  • Results revealed a suggestive AD risk locus on chromosome 12 and replicated several known AD genetic loci, emphasizing the need for including diverse populations in genetic studies to improve understanding of AD.
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Objectives: Spinocerebellar ataxia 27B due to GAA repeat expansions in the fibroblast growth factor 14 (FGF14) gene has recently been recognized as a common cause of late-onset hereditary cerebellar ataxia. Here we present the first report of this disease in the US population, characterizing its clinical manifestations, disease progression, pathological abnormalities, and response to 4-aminopyridine in a cohort of 102 patients bearing GAA repeat expansions.

Methods: We compiled a series of patients with SCA27B, recruited from 5 academic centers across the United States.

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Missense and loss-of-function variants at GWAS loci in familial Alzheimer's disease.

Alzheimers Dement

November 2024

Department of Neurology, Taub Institute for Research on Alzheimer's Disease and the Aging Brain and the Gertrude H. Sergievsky Center, Columbia University, New York, New York, USA.

Background: Few rare variants have been identified in genetic loci from genome-wide association studies (GWAS) of Alzheimer's disease (AD), limiting understanding of mechanisms, risk assessment, and genetic counseling.

Methods: Using genome sequencing data from 197 families in the National Institute on Aging Alzheimer's Disease Family Based Study and 214 Caribbean Hispanic families, we searched for rare coding variants within known GWAS loci from the largest published study.

Results: Eighty-six rare missense or loss-of-function (LoF) variants completely segregated in 17.

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Clinical and neuroradiological spectrum of biallelic variants in NOTCH3.

EBioMedicine

September 2024

Department of Neurogenetics, UCL Institute of Neurology London Queen Square and National Hospital for Neurology and Neurosurgery, University College London, London, United Kingdom. Electronic address:

Background: NOTCH3 encodes a transmembrane receptor critical for vascular smooth muscle cell function. NOTCH3 variants are the leading cause of hereditary cerebral small vessel disease (SVD). While monoallelic cysteine-involving missense variants in NOTCH3 are well-studied in cerebral autosomal dominant arteriopathy with subcortical infarcts and leukoencephalopathy (CADASIL), patients with biallelic variants in NOTCH3 are extremely rare and not well characterised.

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serovar Typhi (. Typhi) causes typhoid fever, a systemic infection that affects millions of people worldwide. .

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Introduction: Neuropsychiatric symptoms (NPS) are highly prevalent in Alzheimer's disease (AD). There are no effective treatments targeting these symptoms.

Methods: To facilitate identification of causative mechanistic pathways, we initiated an effort (NIH: U01AG079850) to collate, harmonize, and analyze all available NPS data (≈ 100,000 samples) of diverse ancestries with whole-genome sequencing data from the Alzheimer's Disease Sequencing Project (ADSP).

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Background And Aims: The prevalence of inflammatory bowel disease among Hispanic/Latine communities is increasing. Pharmacogenomic studies reveal genetic markers that influence treatment decisions. The aim of our study was to examine the frequency and impact of genetic polymorphisms on thiopurine-associated leukopenia (NUDT15, TPMT) and anti-tumor necrosis factor (TNF) immunogenicity (HLA-DQA1∗05) in a cohort of Hispanic patients of diverse ancestral backgrounds.

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Introduction: Clinical and genetic studies have implicated lipid dysfunction in Alzheimer Disease (AD) pathogenesis. However, lipid consumption at the individual-level does not vary greatly within most cohorts, and multiple lipids are rarely measured in any one study.

Methods: Mean country-level lipid intakes were compared to Age-Standardized Alzheimer-Disease-Incidence-Rates(ASAIR) in 183 countries across all inhabited continents.

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Article Synopsis
  • Researchers created a specialized imputation panel for Alzheimer's disease (AD) and related dementias (ADRD) using whole-genome sequencing data, highlighting the importance of structural variants (SVs) in understanding the disease.
  • The panel integrates multiple genetic variants types, improving the ability to predict disease susceptibility from genotype array data and offering a cheaper alternative to full genome sequencing.
  • The study discovered rare genetic variations linked to AD that weren't present in existing databases, enhancing knowledge of AD genetics and emphasizing the value of imputation panels in complex disease research.*
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Polygenic risk scores (PRS) are instrumental in genetics, offering insights into an individual level genetic risk to a range of diseases based on accumulated genetic variations. These scores rely on Genome-Wide Association Studies (GWAS). However, precision in PRS is often challenged by the requirement of extensive sample sizes and the potential for overlapping datasets that can inflate PRS calculations.

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