1,227 results match your criteria: "J. Heyrovsky Institute of Physical Chemistry[Affiliation]"

Copper isotopes and their complexes are intensively studied due to their high potential for applications in radiodiagnosis and radiotherapy. Here, we study the Cu complex of 1,8-bis(2-hydroxybenzyl)-cyclam (HL), which forms an unexpected variety of isomers differing in the mutual orientation of the substituents on the cyclam nitrogen atoms, the protonation of the phenolate pendant, and the ligand denticity. The interconversion of the isomers is rather slow, which made the isolation, identification and investigation of some of the individual species possible.

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Single-molecule localization microscopy (SMLM) allows imaging beyond the diffraction limit. Detection of molecules is a crucial initial step in SMLM. False positive detections, which are not quantitatively controlled in current methods, are a source of artifacts that affect the entire SMLM analysis pipeline.

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[This corrects the article DOI: 10.1039/D4SC01507J.].

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Finding effective antibiotics against multi-resistant strains of bacteria has been a challenging race. Linker-Evolved-Group-Optimized-Lipophosphonoxins (LEGO-LPPOs) are small modular synthetic antibacterial compounds targeting the cytoplasmic membrane. Here we focused on understanding the reasons for the variable efficacy of selected LEGO-LPPOs (LEGO-1, LEGO-2, LEGO-3, and LEGO-4) differing in hydrophobic and linker module structure and length.

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Compositionally complex doping of spinel oxides toward high-entropy oxides is expected to enhance their electrochemical performance substantially. We successfully prepared high-entropy compounds, the oxide (ZnMgCoCu)FeO (HEOFe), lithiated oxyfluoride Li(ZnMgCoCu)FeOF (LiHEOFeF), and lithiated oxychloride Li(ZnMgCoCu)FeOCl (LiHEOFeCl) with a spinel-based cubic structure by ball milling and subsequent heat treatment. The products exhibit particles with sizes from 50 to 200 nm with a homogeneous atomic distribution.

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The viscoelastic properties of biological membranes are crucial in controlling cellular functions and are determined primarily by the lipids' composition and structure. This work studies these properties by varying the structure of the constituting lipids in order to influence their interaction with high-density lipoprotein (HDL) particles. Various fluorescence-based techniques were applied to study lipid domains, membrane order, and the overall lateral as well as the molecule-internal glycerol region mobility in HDL-membrane interactions (i.

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Rationale: Data are required for SIFT-MS analysis of perfluoroalkyl and polyfluoroalkyl substances (PFAS), which are persistent in the environment and cause adverse health effects. Specifically, the rate coefficients and product ion branching ratios of the reactions of HO, NO, O •, O•, OH, O •, NO and NO with PFAS vapours are needed.

Methods: The dual polarity SIFT-MS instrument (Voice200) was used to generate these eight reagent ions and inject them into the flow tube with N carrier gas at a temperature of 393 K.

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Traditional wastewater treatment often fails to remove pharmaceuticals, necessitating advanced solutions, such as TiO photocatalysis, for post-treatment. However, conventionally applied powder TiO can be cumbersome to separate from treated water. To solve this issue, this study immobilized three TiO photocatalysts (Anatase 16, Anatase 5, and P25) into porous layers and evaluated their efficacy for the degradation of three pharmaceuticals (naproxen, NPX; sulfamethoxazole, SMX; metformin, MTF) in standard solutions and greywater pretreated in a membrane bioreactor (MBR).

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A hollow cathode discharge with a copper nickel cathode (Cu50Ni50) was operated in an Ar/H/N gas mixture. Optical emission spectroscopy revealed the formation of NH radicals, which serve as precursors for NH formation. Ion mass spectrometry showed the formation of NH and NH ions indicating NH formation.

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Hot electrons (HEs) represent out-of-equilibrium carriers that are capable of facilitating reactions which are inaccessible under conventional conditions. Despite the similarity of the HE process to catalysis, optimization strategies such as orbital alignment and adsorption kinetics have not received significant attention in enhancing the HE-driven reaction yield. Here, we investigate catalytic effects in HE-driven reactions using a compositional catalyst modification (CCM) approach.

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Purpose: Adhesive remnants removal is the last key step influencing orthodontic treatment outcomes. Four different clearance methods (CM) of orthodontic adhesive were evaluated to determine, which achieved the smoothest enamel surface in the shortest time.

Materials And Methods: 75 intact premolars extracted for orthodontic purposes were included, sixty had an orthodontic bracket bonded and subsequently removed, and fifteen served as the control group.

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Article Synopsis
  • * The article introduces "elimination voltammetry with a linear scan" (EVLS) as a software approach to overcome limitations like low sensitivity and signal overlap, allowing selective elimination of certain current components based on scan rates.
  • * EVLS shows promise for enhancing the understanding of electrochemical processes, particularly in scenarios involving irreversible electrode processes, by selectively preserving key current components while eliminating others for more accurate analysis.
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Importance of Electron Correlation on the Geometry and Electronic Structure of [2Fe-2S] Systems: A Benchmark Study of the [FeS(SCH)], [FeS(SCys)], [FeS(S--tol)], and [FeS(S--xyl)] Complexes.

J Chem Theory Comput

December 2024

Advanced Computing, Mathematics and Data Division, Pacific Northwest National Laboratory, P.O. Box 999, MS J7-10, Richland, Washington 99352, United States.

Iron-sulfur clusters are crucial for biological electron transport and catalysis. Obtaining accurate geometries, energetics, manifolds of their excited electronic states, and reduction energies is important to understand their role in these processes. Using a [2Fe-2S] model complex with Fe and Fe oxidation states, which leads to different charges, i.

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We show that strong molecular rotation drastically modifies the autodetachment of C_{2}^{-} ions in the lowest quartet electronic state a^{4}Σ_{u}^{+}. In the strong-rotation regime, levels of this state only decay by a process termed "rotationally assisted" autodetachment, whose theoretical description is worked out based on the nonlocal resonance model. For autodetachment linked with the exchange of six rotational quanta, the results reproduce a prominent, hitherto unexplained electron emission signal with a mean decay time near 3 ms, observed on stored C_{2}^{-} ions from a hot ion source.

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Photodesorption of CO ices: Rotational and translational energy distributions.

J Chem Phys

November 2024

CNRS, De la Molécule aux Nano-Objets: Réactivité, Interactions et Spectroscopies, MONARIS, Sorbonne Université, 75005 Paris, France.

This study investigates the translational and rovibrational energy of vacuum-ultraviolet (VUV) photodesorbed CO molecules from a CO polycrystalline ice (15 K) at ∼8 eV. The electronic excitation was produced by a pulsed VUV laser, and the photodesorption of CO molecules in their ground and first vibrational states was observed using resonance enhanced multiphoton ionization. Time-of-flight and rotationally resolved spectra were measured, and the kinetic and internal energy distribution were obtained.

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Previously studied complexes with protonic and hydridic hydrogen bonds exhibit significant similarities. The present study provides a detailed investigation of the structure, stabilization, electronic properties, and spectral characteristics of protonic and hydridic hydrogen bonds using low-temperature infrared (IR) spectroscopy and computational methods. Complexes of pentafluorobenzene with ammonia (C₆F₅H⋯NH₃) and triethylgermane with trifluoroiodomethane (Et₃GeH⋯ICF₃) were analyzed using both experimental and computational tools.

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Dielectric barrier discharge ionization (DBDI) sources, employing low-temperature plasma, have emerged as sensitive and efficient ionization tools with various atmospheric pressure ionization processes. In this review, we summarize a historical overview of the development of DBDI, highlighting key principles of gas-phase ion chemistry and the mechanisms underlying the ionization processes within the DBDI source. These processes start with the formation of reagent ions or metastable atoms from the discharge gas, which depends on the nature of the gas (helium, nitrogen, air) and on the presence of water vapor or other compounds or dopants.

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Basicity of Mn-Hydroxo Complexes Controls the Thermodynamics of Proton-Coupled Electron Transfer Reactions.

Inorg Chem

November 2024

Department of Chemistry and Center for Environmentally Beneficial Catalysis, The University of Kansas, 1567 Irving Hill Road, Lawrence, Kansas 66045, United States.

Several manganese-dependent enzymes utilize Mn-hydroxo units in concerted proton-electron transfer (CPET) reactions. We recently demonstrated that hydrogen bonding to the hydroxo ligand in the synthetic [Mn(OH)(PaPyN)] complex increased rates of CPET reactions compared to the [Mn(OH)(PaPyQ)] complex that lacks a hydrogen bond. In this work, we determine the effect of hydrogen bonding on the basicity of the hydroxo ligand and evaluate the corresponding effect on CPET reactions.

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Studying the complex realm of cellular communication and interactions by fluorescence microscopy requires sample fixation on a transparent substrate. To activate T cells, which are pivotal in controlling the immune system, it is important to present the activating antigen in a spatial arrangement similar to the nature of the antigen-presenting cell, including the presence of ligands on microvilli. Similar arrangement is predicted for some other immune cells.

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A simple approach to rotationally invariant machine learning of a vector quantity.

J Chem Phys

November 2024

J. Heyrovský Institute of Physical Chemistry, Academy of Sciences of the Czech Republic, v.v.i., Dolejškova 3, 18223 Prague 8, Czech Republic.

Article Synopsis
  • Machine learning (ML) for predicting vector or tensor properties requires maintaining proper invariance with molecular rotation, unlike energy prediction which is simpler due to its scalar nature.
  • The proposed "rotate-predict-rotate" (RPR) technique involves three steps: rotating the molecule to align with its principal axes, predicting the vector property in that orientation, and then transforming the prediction back to the original orientation.
  • This RPR approach ensures covariance for vector properties and can extend to tensors, allowing for rapid training of accurate ML models across numerous molecular configurations.
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Radiation and DNA Origami Nanotechnology: Probing Structural Integrity at the Nanoscale.

Chemphyschem

October 2024

Hybrid Nanostructures, Institute of Chemistry, University of Potsdam, Karl-Liebknecht-Str. 24-25, Potsdam, 14476, Germany.

DNA nanotechnology has emerged as a groundbreaking field, using DNA as a scaffold to create nanostructures with customizable properties. These DNA nanostructures hold potential across various domains, from biomedicine to studying ionizing radiation-matter interactions at the nanoscale. This review explores how the various types of radiation, covering a spectrum from electrons and photons at sub-excitation energies to ion beams with high-linear energy transfer influence the structural integrity of DNA origami nanostructures.

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The adsorption of CO and oxygen and CO oxidation on size-selected Pt clusters were studied by indirect nanoplasmonic sensing (INPS) in the pressure range of 1-100 Pa at = 418 K. CO adsorption was reversible, inducing a blue-shift in the localised surface plasmon resonance (LSPR) response, regardless of the initial CO pressure. We observe a plateau at approximately Δ = -0.

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Interest in the observation and characterization of organic isomers in astronomical environments has grown rapidly with an increase in the sensitivity of detection techniques. Accurate modeling and interpretation of these environments require experimental isomer-specific reactivity and spectroscopic measurements. Given the abundance of formaldehyde (HCO) in various astrophysical objects, the properties and reactivities of its cation isomers HCO and HCOH are of significant interest.

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Linker-Evolved-Group-Optimized-Lipophosphonoxins (LEGO-LPPO) are small synthetic modular peptidomimetics with promising antimicrobial activity. The LEGO-LPPO mechanism of antibacterial action has been determined to be the depolarization and disruption of bacterial membranes. Their modular nature is advantageous for fine tuning their biological properties.

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Polaritonic Chemistry Using the Density Matrix Renormalization Group Method.

J Chem Theory Comput

November 2024

J. Heyrovský Institute of Physical Chemistry, Academy of Sciences of the Czech Republic, v.v.i., Dolejškova 3, 18223 Prague 8, Czech Republic.

The emerging field of polaritonic chemistry explores the behavior of molecules under strong coupling with cavity modes. Despite recent developments in polaritonic methods for simulating polaritonic chemistry under electronic strong coupling, their capabilities are limited, especially in cases where the molecule also features strong electronic correlation. To bridge this gap, we have developed a novel method for cavity QED calculations utilizing the Density Matrix Renormalization Group (DMRG) algorithm in conjunction with the Pauli-Fierz Hamiltonian.

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