1,011 results match your criteria: "Izmir Institute of Technology[Affiliation]"
Methods Mol Biol
January 2025
Department of Bioengineering, Izmir Institute of Technology, Izmir, Turkey.
Negative magnetophoresis is employed to levitate cells in a paramagnetic medium without the need for magnetic labeling, preserving their natural state and minimizing toxicity. The single-ring magnet configuration that provides an open space in the levitation chamber enhances culture accessibility and scalability, enabling the formation of millimeter-sized 3D structures through cellular self-assembly. This system provides a versatile and cost-effective approach for diverse applications, including tissue engineering and biofabrication.
View Article and Find Full Text PDFTurk J Biol
June 2024
Department of Bioengineering, İzmir Institute of Technology, İzmir, Turkiye.
Organs-on-chips (OoCs) or microphysiological platforms are biomimetic systems engineered to emulate organ structures on microfluidic devices for biomedical research. These microdevices can mimic biological environments that enable cell-cell interactions on a small scale by mimicking 3D in vivo microenvironments outside the body. Thus far, numerous single and multiple OoCs that mimic organs have been developed, and they have emerged as forerunners for drug efficacy and cytotoxicity testing.
View Article and Find Full Text PDFChemosphere
January 2025
Department of Chemistry, Faculty of Science, Ege University, Bornova, Izmir, 35040, Türkiye. Electronic address:
This study investigates the removal efficiency of the toxic element antimony (Sb(V)) using a combined system incorporating ion exchange resins and ion exchange membranes to form an Electrodeionization (EDI) cell. The impact of various operational parameters, including applied potential, flow rate, Na₂SO₄ concentration in the electrode compartment, and the presence of interfering ions, on Sb(V) removal was systematically examined. Results indicate that increasing the applied potential significantly enhances Sb(V) removal, achieving a maximum removal rate of 99% at 40 V and 50 V, with the residual Sb(V) concentrations reducing to 60 μg/L and 9 μg/L, respectively.
View Article and Find Full Text PDFBMC Womens Health
January 2025
Department of General Surgery, İstanbul Faculty of Medicine, İstanbul University, İstanbul, 34093, Türkiye.
Background: The Bahçeşehir population-based mammography screening program (BMSP) is an example of Türkiye's first population-based screening program. This study aims to reveal the successful implementation of population-based secreening program in one of the low- and middle-income countries, Türkiye and long-term results of patients diagnosed with breast cancer during BMSP.
Methods: This study was conducted between 2009 and 2019, in the Bahçeşehir county of Istanbul.
ACS Nano
December 2024
Nanochemistry, Istituto Italiano di Tecnologia, Via Morego 30, Genova 16163, Italy.
We report the synthesis of ethylammonium lead iodide (EAPbI) colloidal nanocrystals as another member of the lead halide perovskites family. The insertion of an unusually large -cation (274 pm in diameter) in the perovskite structure, hitherto considered unlikely due to the unfavorable Goldschmidt tolerance factor, results in a significantly larger lattice parameter compared to the Cs-, methylammonium- and formamidinium-based lead halide perovskite homologues. As a consequence, EAPbI nanocrystals are highly unstable, evolving to a nonperovskite δ-EAPbI polymorph within 1 day.
View Article and Find Full Text PDFACS Food Sci Technol
December 2024
Department of Food Engineering, Middle East Technical University (METU), Ankara 06800, Turkey.
Noncentrifugal sugar (NCS) is an unrefined, dark brown sugar containing minerals and plant secondary metabolites, unlike refined white sugar (WS). This study explored using NCS in confectionary jellies as an alternative sugar. We used different concentrations of NCS and WS to prepare low methoxyl pectin (LMP) confectionery gels characterized by their physical and rheological properties along with time-domain nuclear magnetic resonance (TD-NMR) relaxometry.
View Article and Find Full Text PDFBiomed Mater
January 2025
Department of Chemistry, Izmir Institute of Technology, 35430 Urla/Izmir, Türkiye.
Injectable nanocomposite hydrogels (NC hydrogels) have the potential to be used for minimally invasive local drug delivery. In particular, pH-sensitive injectable NC hydrogels can be used in cancer treatment to deliver high doses of anticancer drugs to the target site in cancer tissue without damaging healthy tissue. Recent studies have shown that in addition to stimuli-responsive delivery of anticancer drugs to cancer cells, oxygen delivery to the hypoxic environment of cancer tissue can lead to advanced effects, as hypoxia and an acidic pH are common characteristics of cancer tissue.
View Article and Find Full Text PDFInt J Mol Sci
November 2024
A.N. Bach Institute of Biochemistry, Research Centre of Biotechnology of the Russian Academy of Sciences, Moscow 119071, Russia.
The calcium cation is a crucial signaling molecule involved in numerous cellular pathways. Beyond its role as a messenger or modulator in intracellular cascades, calcium's function in excitable cells, including nerve impulse transmission, is remarkable. The central role of calcium in nervous activity has driven the rapid development of fluorescent techniques for monitoring this cation in living cells.
View Article and Find Full Text PDFACS Omega
December 2024
Department of Chemical Engineering, İzmir Institute of Technology, Urla, İzmir 35430, Turkey.
In recent years, there has been a notable shift toward exploring plant and animal extracts for the fabrication of tissue engineering structures that seamlessly integrate with the human body, providing both biological compatibility and physical reinforcement. In this particular investigation, we synthesized bilayer wound dressings by incorporating snail () secretions, comprising mucus and slime, into chitosan matrices via lyophilization and electrospinning methodologies. A nanofiber layer was integrated on top of the porous structure to mimic the epidermal layer for keratinocyte activity as well as acting as an antibacterial barrier against possible infection, whereas a porous structure was designed to mimic the dermal microenvironment for fibroblast activity.
View Article and Find Full Text PDFSleep
December 2024
Centre for Biological Timing, Division of Neuroscience, School of Biological Sciences, Faculty of Biology Medicine and Health, University of Manchester, Manchester M13 9PT, UK.
Study Objectives: Melanopsin-expressing retinal ganglion cells, which provide light information to time sleep and entrain circadian clocks, also influence perceived brightness raising the possibility that psychophysical paradigms could be used to explore the origins and implications of variability in melanopic sensitivity. We aimed to develop accessible psychophysical tests of melanopic vision and relate outcomes with a pupillometric measure of melanopsin function (post-illumination pupil response; PIPR) and prior light exposure.
Methods: Individually calibrated pairs of isoluminant stimuli differing in melanopic radiance from a four primary source were presented sequentially with superimposed random colour offsets in a two alternative forced choice brightness preference paradigm to 41 naïve adult participants with personal light exposure data for the prior 7 days and PIPR measures defined by comparing maintained pupil constriction for luminance matched 'red' vs 'blue' pulses.
Tissue Eng Part C Methods
December 2024
Department of Bioengineering, Izmir Institute of Technology (IZTECH), Izmir, Turkey.
Plant-derived hydrocolloids offer promising prospects in biomedical applications. Among these, Flaxseed hydrocolloid (FSH) can form a soft, elastic, and biocompatible hydrocolloid with tunable viscosity and superior swelling capacity, making it an attractive scaffold. This study introduces a green extraction method for FSH, employing a single-step aqueous extraction process and fabrication of FSH scaffold.
View Article and Find Full Text PDFACS Omega
December 2024
Department of Chemical Engineering, Izmir Institute of Technology, Gulbahce Koyu/Urla, Izmir 35430, Turkey.
In this study, the performance of the cell-penetrating and fusogenic peptide, TAT-HA2, which consists of a cell-permeable HIV trans-activator of transcription (TAT) protein transduction domain and a pH-responsive influenza A virus hemagglutinin protein (HA2) domain, was comparatively evaluated for the first time in peptideplex, multicomponent, and conjugate siRNA delivery systems. TAT-HA2 in all three systems protected siRNA from degradation, except in the conjugate system with a low Peptide/siRNA ratio. The synergistic effect of different peptide domains enhanced the transfection efficiency of multicomponent and conjugate systems compared to that of peptideplexes, which was attributed to the surface configuration of TAT-HA2 peptides depending on the nature of attachment.
View Article and Find Full Text PDFPeerJ Comput Sci
October 2024
Computer Engineering, Izmir Institute of Technology, Izmir, Turkey.
Frequent subgraph mining (FSM) is an essential and challenging graph mining task used in several applications of the modern data science. Some of the FSM algorithms have the objective of finding all frequent subgraphs whereas some of the algorithms focus on discovering frequent subgraphs approximately. On the other hand, modern applications employ evolving graphs where the increments are small graphs or stream of nodes and edges.
View Article and Find Full Text PDFPeerJ Comput Sci
November 2024
Computer Engineering, Izmir Institute of Technology, Izmir, Turkey.
Clique counting is a crucial task in graph mining, as the count of cliques provides different insights across various domains, social and biological network analysis, community detection, recommendation systems, and fraud detection. Counting cliques is algorithmically challenging due to combinatorial explosion, especially for large datasets and larger clique sizes. There are comprehensive surveys and reviews on algorithms for counting subgraphs and triangles (three-clique), but there is a notable lack of reviews addressing k-clique counting algorithms for k > 3.
View Article and Find Full Text PDFNanotechnology
December 2024
Chemistry Department, Izmir Institute of Technology, Urla, İzmir 35430, Turkey.
This review focuses on recent progress of wet-chemistry-based synthesis methods for infrared (IR) colloidal quantum dots (CQD), semiconductor nanocrystals with a narrow energy bandgap that absorbs and/or emits IR photos covering from 0.7 to 25 micrometers. The sections of the review are colloidal synthesis, precursor reactivity, cation exchange, doping and de-doping, surface passivation and ligand exchange, intraband transitions, quenching and purification, and future directions.
View Article and Find Full Text PDFChemosphere
December 2024
Department of Materials Science and Engineering, İzmir Institute of Technology, 35430, Gülbahçe, Urla, İzmir, Turkey. Electronic address:
The selective extraction of lithium from aqueous systems necessitates efficient sorbent materials. Spinel-type lithium manganese oxide ion sieves (LMOs) have been bee recognized for their high performance in this application. However, the elevated market cost of the spinel form (λ-MnO) raises economic concerns, posing challenges to the feasibility of the extraction process.
View Article and Find Full Text PDFTransplant Proc
December 2024
Department of Internal Medicine, Marmara University Faculty of Medicine, Istanbul, Turkey.
Purpose: Reducing renal ischemia is crucial for the function and survival of grafts from nonheartbeat donors, as it leads to inflammatory responses and tubulointerstitial damage. The primary concern with organs from nonheartbeat donors is the long warm ischemia period and reperfusion injury following renal transplantation. This study had two main goals; one goal is to determine how Necrostatin-1 targeting the PANoptosome affects PANoptosis in the nonheart-beating donor rat model.
View Article and Find Full Text PDFJ Pharmacokinet Pharmacodyn
December 2024
Department of Molecular Biology and Genetics, Izmir Institute of Technology, Izmir, Turkey.
Cancer is one of the most common and fatal diseases worldwide and kills millions of people every year. Cancer drug resistance, lack of efficacy, and safety are significant problems in cancer patients. A multiorgan-on-a-chip (MOC) device consisting of breast and liver compartments was designed with AutoCAD software.
View Article and Find Full Text PDFAnticancer Res
December 2024
Department of Molecular Biology and Genetics, Faculty of Science, Izmir Institute of Technology, Izmir, Türkiye
Background/aim: Breast cancer is the leading cause of cancer-related mortality among women worldwide. The connexin (Cx) family, including GJB1 (Cx32), plays complex roles in tumor progression depending on cellular context and cancer subtype. While Cx32 overexpression has been linked to lymph node metastasis, its effects on survival and molecular processes remain unclear.
View Article and Find Full Text PDFCells
November 2024
Noncoding RNA Laboratory, Department of Molecular Biology and Genetics, İzmir Institute of Technology, 35430 Izmir, Türkiye.
RNA methylation adds a second layer of genetic information that dictates the post-transcriptional fate of RNAs. Although various methods exist that enable the analysis of RNA methylation in a site-specific or transcriptome-wide manner, whether biophysical approaches can be employed to such analyses is unexplored. In this study, Fourier-transform infrared (FT-IR) and circular dichroism (CD) spectroscopy are employed to examine the methylation status of both synthetic and cellular RNAs.
View Article and Find Full Text PDFBMC Public Health
November 2024
Max Planck Research Group Translational Sensory & Circadian Neuroscience, Max Planck Institute for Biological Cybernetics, Tübingen, Germany.
Light profoundly impacts many aspects of human physiology and behaviour, including the synchronization of the circadian clock, the production of melatonin, and cognition. These effects of light, termed the non-visual effects of light, have been primarily investigated in laboratory settings, where light intensity, spectrum and timing can be carefully controlled to draw associations with physiological outcomes of interest. Recently, the increasing availability of wearable light loggers has opened the possibility of studying personal light exposure in free-living conditions where people engage in activities of daily living, yielding findings associating aspects of light exposure and health outcomes, supporting the importance of adequate light exposure at appropriate times for human health.
View Article and Find Full Text PDFACS Omega
November 2024
Izmir International Biomedicine and Genome Institute, Dokuz Eylul University, Izmir 35340, Türkiye.
Organoids are self-assembled 3D cellular structures that resemble organs structurally and functionally, providing platforms for molecular and therapeutic studies. Generation of organoids from human cells often requires long and costly procedures with arguably low efficiency. Prediction and selection of cellular aggregates that result in healthy and functional organoids can be achieved by using artificial intelligence-based tools.
View Article and Find Full Text PDFSci Rep
November 2024
Faculty of Engineering, Izmir Institute of Technology, İzmir, Turkey.
Expansive soils have a high tendency for volume change in case of fluctuations in moisture content, potentially causing significant damage to light structures, particularly road pavements. This paper investigates the influence of waste paper sludge ([Formula: see text]) as an alternative sustainable stabilizer on the volume change behavior of expansive road subgrade soils of different origins. For this purpose, [Formula: see text] was added to the expansive soils at ratios of 3%, 6%, 9%, 12%, and 15% by dry weight of the soils.
View Article and Find Full Text PDFInt J Biol Macromol
December 2024
Izmir Institute of Technology, Department of Chemical Engineering, Gulbahce, Urla 35430, Izmir, Turkey.
This study aims to improve the properties of polyether sulfone (PES) membranes by using an innovative composite filler. Pistachio shell-derived activated carbon (PSAC) was initially synthesized via chemical activation, followed by surface modification with ZIF-8 and ZIF-67. Subsequently, modified membranes with varying weight percentages of this composite were fabricated using the phase inversion method.
View Article and Find Full Text PDFMacromol Biosci
November 2024
Department of Bioengineering, Izmir Institute of Technology, Izmir, 35430, Turkey.