Sea Anemone Kunitz Peptide HCIQ2c1: Structure, Modulation of TRPA1 Channel, and Suppression of Nociceptive Reaction In Vivo.

TRPA1 is a homotetrameric non-selective calcium-permeable channel. It contributes to chemical and temperature sensitivity, acute pain sensation, and development of inflammation. HCIQ2c1 is a peptide from the sea anemone that inhibits serine proteases.

In Search of the Role of Three-Finger Starfish Proteins.

Three-finger proteins (TFPs), or Ly6/uPAR proteins, are characterized by the beta-structural LU domain containing three protruding "fingers" and stabilized by four conserved disulfide bonds. TFPs were initially characterized as snake alpha-neurotoxins, but later many studies showed their regulatory roles in different organisms. Despite a known expression of TFPs in vertebrates, they are poorly studied in other taxa.

A Deep Learning Approach to Uncover Voltage-Gated Ion Channels' Intermediate States.

Owing to recent advancements in cryo-electron microscopy, voltage-gated ion channels have gained a greater comprehension of their structural characteristics. However, a significant enigma remains unsolved for a large majority of these channels: their gating mechanism. This mechanism, which encompasses the conformational changes between open and closed states, is pivotal to their proper functioning.

South-East Asian populations of Karualona cf. karua (King. 1853) (Crustacea: Cladocera: Chydoridae) belong to a separate species.

Study of populations of Karualona cf. karua (King, 1853) (rustacea: Cladocera) from South-East Asia and Sri Lanka revealed that they belong to an undescribed taxon. Karualona fatimae sp.

Spring and autumn fauna of Cladocera (Crustacea: Branchiopoda) in the center of East Asia plain: Hunan and Hubei Provinces of China.

Cladoceran (Crustacea: Branchiopoda) fauna of Hunan and Hubei provinces of China was studied in April 2014 and October 2018. 49 species of Cladocera were found, Anthalona sanoamuangae Sinev & Kotov, 2012 was recorded for China for the first time. Eight species were newly recorded for central China, taxonomic status of four species was clarified.

Leaf Extracts of Invasive Woody Species Demonstrate Allelopathic Effects on the Growth of a Lawn Grass Mixture.

Biochemical composition was studied in the leaf litter of alien woody species included in the 100 most aggressive invasive species of Europe: , , , , and . Using GC-MS, we detected 187 metabolites in the leaf litter, which are phenolic acids and their derivatives, carbohydrates and their derivatives, polyphenolic compounds, cyclic esters, glycosides, and amino acids and their derivatives. Species-specific metabolites were identified for each species.

Extracellular matrix-induced signaling pathways in mesenchymal stem/stromal cells.

The extracellular matrix (ECM) is a crucial component of the stem cell microenvironment, or stem-cell niches, and contributes to the regulation of cell behavior and fate. Accumulating evidence indicates that different types of stem cells possess a large variety of molecules responsible for interactions with the ECM, mediating specific epigenetic rearrangements and corresponding changes in transcriptome profile. Signals from the ECM are crucial at all stages of ontogenesis, including embryonic and postnatal development, as well as tissue renewal and repair.

Reusable SERS Substrates Based on Gold Nanoparticles for Peptide Detection.

Raman spectroscopy is a powerful analytical technique widely used for quantitative and qualitative analysis. However, the development of inexpensive, reproducible, and reusable enhancing substrates remains a challenge for material scientists and analytical chemists. In this study, we address this challenge by demonstrating the deposition of core-shell nanoparticles consisting of a gold core and a thin inert SiO shell within a confined space, resulting in the formation of a highly efficient Raman-enhancing structure.

Vibrational Spectroscopy as a Tool for Bioanalytical and Biomonitoring Studies.

The review briefly describes various types of infrared (IR) and Raman spectroscopy methods. At the beginning of the review, the basic concepts of biological methods of environmental monitoring, namely bioanalytical and biomonitoring methods, are briefly considered. The main part of the review describes the basic principles and concepts of vibration spectroscopy and microspectrophotometry, in particular IR spectroscopy, mid- and near-IR spectroscopy, IR microspectroscopy, Raman spectroscopy, resonance Raman spectroscopy, Surface-enhanced Raman spectroscopy, and Raman microscopy.

Crystal structure and electronic properties of low-dimensional hexamethylenediaminium lead halide perovskites.

This work reports on hybrid hexamethylenediaminium lead halide perovskites. The materials were prepared using wet synthesis and the subsequent precipitation from aqueous solution. Structural and morphological charactarization studies show their high degree of crystallinity and phase purity.

Community assembly and co-occurrence network complexity of interstitial microbial communities in the Arctic (investigation of ciliates in the White Sea intertidal zone).

Arctic coastal ecosystems play a major role in global environmental system and have been altered significantly by climate changes. To better understanding the response of marine coastal ecosystems towards rapid Arctic climate changes, we examined the variation in diversity and community structure and provided insights into the co-occurrence network and community assembly of interstitial ciliates in the Kandalaksha Gulf of the White Sea from 2009 to 2019. Co-occurrence networks analysis indicated considerably high ration of positive correlations within a community that indicated low competition between interstitial ciliate species.

Size Distribution of Inactivated Tick-Borne Encephalitis Virus Particles Revealed by a Comprehensive Physicochemical Approach.

Tick-borne encephalitis virus (TBEV) is an enveloped RNA virus, a member of the genus (family ). Here, we provide a detailed analysis of the size and structure of the inactivated TBEV vaccine strain Sofjin-Chumakov. Four analytical methods were used to analyze individual TBEV particles-negative staining TEM, cryo-EM, atomic force microscopy (AFM), and nanoparticle tracking analysis (NTA).

Structure of an Intranucleosomal DNA Loop That Senses DNA Damage during Transcription.

Transcription through chromatin by RNA polymerase II (Pol II) is accompanied by the formation of small intranucleosomal DNA loops containing the enzyme (i-loops) that are involved in survival of core histones on the DNA and arrest of Pol II during the transcription of damaged DNA. However, the structures of i-loops have not been determined. Here, the structures of the intermediates formed during transcription through a nucleosome containing intact or damaged DNA were studied using biochemical approaches and electron microscopy.

Top-down control of planktonic ciliates by microcrustacean predators is stronger in lakes than in the ocean.

Planktonic ciliates are major components of pelagic food webs in both marine and freshwaters. Their population dynamics are controlled 'bottom-up' by prey availability and 'top-down' by microcrustacean predators. In oceans, copepods are the main ciliate predators while in lakes cladocerans are the typical predators.

Distribution of soil testate amoeba assemblages along an elevation gradient on Mount Fuji (Japan).

Elevation gradients have been useful to study distributional patterns of soil organisms since the time of Humboldt but only recently these patterns have been studied for soil microorganisms. Here we report the results on species diversity and composition of soil- and moss-dwelling testate amoeba assemblages along a 1400 m elevation gradient (904-2377 m a.s.

Complete Sequences of the Velvet Worm Slime Proteins Reveal that Slime Formation is Enabled by Disulfide Bonds and Intrinsically Disordered Regions.

The slime of velvet worms (Onychophora) is a strong and fully biodegradable protein material, which upon ejection undergoes a fast liquid-to-solid transition to ensnare prey. However, the molecular mechanisms of slime self-assembly are still not well understood, notably because the primary structures of slime proteins are yet unknown. Combining transcriptomic and proteomic studies, the authors have obtained the complete primary sequences of slime proteins and identified key features for slime self-assembly.

Sandwiched CoFeO/SrFeAlO/CoFeO nanoparticles with exchange-coupling effect.

Exchange-coupled hard/soft ferrite nanoparticles are prospective to squeeze out a part of expensive magnets based on rare-earth elements. However, the known exchange-coupled composite ferrite nanoparticles often suffer from the lack of a powerful enough hard magnetic core, high defectivity of magnetic phases, and a poor interface between them. Herein, we demonstrate the first efficient synthesis of sandwiched nanomagnets, which exhibit a pronounced exchange-coupling effect.

Novel Bacteriophage Aristophanes Encoding Structural Polysaccharide Deacetylase.

appears to be one of the most crucial nosocomial pathogens. A possible component of antimicrobial therapy for infections caused by extremely drug-resistant strains may be specific lytic bacteriophages or phage-derived enzymes. In the present study, we observe the biological features, genomic organization, and phage-host interaction strategy of novel virulent bacteriophage Aristophanes isolated on strain having K26 capsular polysaccharide structure.

Temporal variability of Pu signatures in a Pb-dated Sphagnum peat profile from the Northern Ural, Russian Federation.

The peat archives are one of the stratigraphic records revealing clearly physical, chemical and biological signals of human influence on the Earth System since the 1950s, at least. The presented study was aimed mainly to identify the level and origin of anthropogenic radionuclides such as Pu in a Pb-dated peat profile derived from the Northern Ural, Russian Federation. As stated, the vertical variability of Pu/Pu isotopic compositions reflects the nuclear weapons testing history with the maximum in the 1960s and small regional impact most likely of high-yielded tests in the 1950s as well as Chinese detonations in the 1970s.

Size compartmentalization of energy channeling in terrestrial belowground food webs.

Size-structured food webs form integrated trophic systems where energy is channeled from small to large consumers. Empirical evidence suggests that size structure prevails in aquatic ecosystems, whereas in terrestrial food webs trophic position is largely independent of body size. Compartmentalization of energy channeling according to size classes of consumers was suggested as a mechanism that underpins functioning and stability of terrestrial food webs including those belowground, but their structure has not been empirically assessed across the whole size spectrum.

Decade-scale change in testate amoebae community primarily driven by anthropogenic disturbance than natural change in a large subtropical reservoir.

Understanding the extent of human activities leading to an influx of chemical pollutants that cause substantial environmental transformations is the focus of much ongoing research. In this study, we present a multi-proxy record based on a sediment core from a large subtropical reservoir (Xinfengjiang Reservoir) in south China with an emphasis on the changes in testate amoebae community, in combination with sedimentological (radioactivity, physicochemistry, nutrient and organochlorine pesticides) and climatological (air temperature and precipitation) data over the last three decades. Twenty-seven testate amoebae species belonging to seven genera (Arcella, Centropyxis, Cyclopyxis, Difflugia, Netzelia, Euglypha and Pseudodifflugia) were observed.

Key periods of peatland development and environmental changes in the middle taiga zone of Western Siberia during the Holocene.

The response of peatlands to climate change can be highly variable. Through understanding past changes we can better predict the response of peatlands to future climate change. We use a multi-proxy approach to reconstruct the surface wetness and carbon accumulation of the Mukhrino mire (Western Siberia), describing the development of the mire since peat formation in the early Holocene, around 9360 cal.

Phylogenetic comparisons reveal mosaic histories of larval and adult shell matrix protein deployment in pteriomorph bivalves.

Molluscan shells are organo-mineral composites, in which the dominant calcium carbonate is intimately associated with an organic matrix comprised mainly of proteins and polysaccharides. However, whether the various shell matrix proteins (SMPs) date to the origin of hard skeletons in the Cambrian, or whether they represent later deployment through adaptive evolution, is still debated. In order to address this issue and to better understand the origins and evolution of biomineralization, phylogenetic analyses have been performed on the three SMP families, Von Willebrand factor type A (VWA) and chitin-binding domain-containing protein (VWA-CB dcp), chitobiase, and carbonic anhydrase (CA), which exist in both larval and adult shell proteomes in the bivalves, Crassostrea gigas and Pinctada fucata.