25 results match your criteria: "Interdisciplinary Cluster for Applied Genoproteomics (GIGA) of University of Liège (ULg)[Affiliation]"

BLV: lessons on vaccine development.

Retrovirology

October 2019

Molecular and Cellular Epigenetics (GIGA) and Molecular Biology (TERRA), University of Liège (ULiège), 4000, Liege, Belgium.

Vaccination against retroviruses is a challenge because of their ability to stably integrate into the host genome, undergo long-term latency in a proportion of infected cells and thereby escape immune response. Since clearance of the virus is almost impossible once infection is established, the primary goal is to achieve sterilizing immunity. Besides efficacy, safety is the major issue since vaccination has been associated with increased infection or reversion to pathogenicity.

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Muscle formation is controlled by a number of key myogenic transcriptional regulators that govern stage-specific gene expression programs and act as terminal effectors of intracellular signaling pathways. To date, the role of phosphatases in the signaling cascades instructing muscle development remains poorly understood. Here, we show that a specific PP2A-B55δ holoenzyme is necessary for skeletal myogenesis.

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Spasticity Management in Disorders of Consciousness.

Brain Sci

December 2017

Coma Science Group, GIGA Research (Interdisciplinary Cluster for Applied Genoproteomics)-GIGA Consciousness & Neurology Department, University and University Hospital of Liege, 4000 Liege, Belgium.

Spasticity is a motor disorder frequently encountered after a lesion involving the central nervous system. It is hypothesized to arise from an anarchic reorganization of the pyramidal and parapyramidal fibers and leads to hypertonia and hyperreflexia of the affected muscular groups. While this symptom and its management is well-known in patients suffering from stroke, multiple sclerosis or spinal cord lesion, little is known regarding its appropriate management in patients presenting disorders of consciousness after brain damage.

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Stress-induced unfolded protein response contributes to Zika virus-associated microcephaly.

Nat Neurosci

January 2018

GIGA-Neurosciences, Interdisciplinary Cluster for Applied Genoproteomics (GIGA-R), University of Liège, C.H.U. Sart Tilman, Liège, Belgium.

Accumulating evidence support a causal link between Zika virus (ZIKV) infection during gestation and congenital microcephaly. However, the mechanism of ZIKV-associated microcephaly remains unclear. We combined analyses of ZIKV-infected human fetuses, cultured human neural stem cells and mouse embryos to understand how ZIKV induces microcephaly.

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We describe here a method to identify the position of retroviral insertion sites and simultaneously to quantify the absolute abundance of each clone, i.e., the number of cells having the provirus inserted at a given place in the host genome.

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Infusion of mesenchymal stromal cells after deceased liver transplantation: A phase I-II, open-label, clinical study.

J Hepatol

July 2017

Interdisciplinary Cluster for Applied Genoproteomics (GIGA)-I3-haematology, University of Liege, Belgium; Department of Haematology, CHU Liege, University of Liege, (CHU ULg), Belgium.

Background & Aims: Mesenchymal stromal cell (MSC) infusion could be a means to establish tolerance in solid organ recipients. The aim of this prospective, controlled, phase I study was to evaluate the feasibility, safety and tolerability of a single infusion of MSCs in liver transplant recipients.

Methods: Ten liver transplant recipients under standard immunosuppression received 1.

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Human T-cell leukemia virus type 1 (HTLV-1) basic-leucine zipper (bZIP) factor (HBZ) is a key player in proliferation and transformation of HTLV-1-infected cells, thus contributing to adult T-cell leukemia (ATL) development. HBZ deregulates gene expression within the host cell by interacting with several cellular partners. Through its C-terminal ZIP domain, HBZ is able to contact and activate JunD, a transcription factor of the AP-1 family.

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Whole genome sequencing of 51 breast cancers reveals that tumors are devoid of bovine leukemia virus DNA.

Retrovirology

November 2016

Molecular and Cellular Epigenetics, Interdisciplinary Cluster for Applied Genoproteomics (GIGA), University of Liège (ULg), B34, 1 Avenue de l'Hôpital, 4000, Sart-Tilman Liège, Belgium.

Controversy exists regarding the association of bovine leukemia virus (BLV) and breast cancer. PCR-based experimental evidence indicates that BLV DNA is present in breast tissue and that as many as 37% of cancer cases may be attributable to viral exposure. Since this association might have major consequences for human health, we evaluated 51 whole genomes of breast cancer samples for the presence of BLV DNA.

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Valproic acid improves second-line regimen of small cell lung carcinoma in preclinical models.

ERJ Open Res

October 2015

Molecular Biology (GxABT), University of Liege (ULg), Gembloux, Belgium; Molecular and Cellular Epigenetics (GIGA), ULg, Liege, Belgium; Interdisciplinary Cluster for Applied Genoproteomics (GIGA), ULg, Liege, Belgium.

With 5-year survival rates below 5%, small cell lung carcinoma (SCLC) has very poor prognosis and requires improved therapies. Despite an excellent overall response to first-line therapy, relapses are frequent and further treatments are disappointing. The goal of the study was to improve second-line therapy of SCLC.

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MicroRNAs in Valvular Heart Diseases: Potential Role as Markers and Actors of Valvular and Cardiac Remodeling.

Int J Mol Sci

July 2016

GIGA-Cardiovascular Sciences, Interdisciplinary Cluster for Applied Genoproteomics (GIGA), University of Liège, 4000 Liège, Belgium.

miRNAs are a class of over 5000 noncoding RNAs that regulate more than half of the protein-encoding genes by provoking their degradation or preventing their translation. miRNAs are key regulators of complex biological processes underlying several cardiovascular disorders, including left ventricular hypertrophy, ischemic heart disease, heart failure, hypertension and arrhythmias. Moreover, circulating miRNAs herald promise as biomarkers in acute myocardial infarction and heart failure.

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Control of mRNA levels, a fundamental aspect in the regulation of gene expression, is achieved through a balance between mRNA synthesis and decay. E26-related gene (Erg) proteins are canonical transcription factors whose previously described functions are confined to the control of mRNA synthesis. Here, we report that ERG also regulates gene expression by affecting mRNA stability and identify the molecular mechanisms underlying this function in human cells.

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Emerging Roles for the Unfolded Protein Response in the Developing Nervous System.

Trends Neurosci

June 2016

GIGA-Neurosciences, University of Liège, C.H.U. Sart Tilman, Liège 4000, Belgium; Interdisciplinary Cluster for Applied Genoproteomics (GIGA-R), University of Liège, C.H.U. Sart Tilman, Liège 4000, Belgium; Walloon Excellence in Lifesciences and Biotechnology (WELBIO), University of Liège, C.H.U. Sart Tilman, Liège 4000, Belgium. Electronic address:

The unfolded protein response (UPR) is a homeostatic signaling pathway triggered by protein misfolding in the endoplasmic reticulum (ER). Beyond its protective role, it plays important functions during normal development in response to elevated demand for protein folding. Several UPR effectors show dynamic temporal and spatial expression patterns that correlate with milestones of the central nervous system (CNS) development.

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The Prosurvival IKK-Related Kinase IKKε Integrates LPS and IL17A Signaling Cascades to Promote Wnt-Dependent Tumor Development in the Intestine.

Cancer Res

May 2016

Interdisciplinary Cluster for Applied Genoproteomics (GIGA), University of Liege, Liège, Belgium. Laboratory of Medical Chemistry, GIGA Molecular Biology of Diseases, University of Liege, Liège, Belgium. Walloon Excellence in Life Sciences and Biotechnology (WELBIO), University of Liege, Liège, Belgium.

Constitutive Wnt signaling promotes intestinal cell proliferation, but signals from the tumor microenvironment are also required to support cancer development. The role that signaling proteins play to establish a tumor microenvironment has not been extensively studied. Therefore, we assessed the role of the proinflammatory Ikk-related kinase Ikkε in Wnt-driven tumor development.

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Article Synopsis
  • ADAMTS2, 3, and 14 are known as procollagen N-proteinases (pNPs) due to their role in cleaving the aminopropeptide of fibrillar procollagens and may be involved in other processes like blood coagulation and fertility, though their specific substrates are unclear.
  • Using advanced labeling techniques, researchers found numerous candidate substrates for these enzymes, many of which are linked to extracellular matrix components and cell signaling proteins, indicating their broader biological roles.
  • The study highlights that pNPs not only process procollagens but also regulate significant biological functions, particularly in matrix deposition and remodeling, emphasizing their importance in TGF-β signaling pathways.
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A Dynamic Unfolded Protein Response Contributes to the Control of Cortical Neurogenesis.

Dev Cell

December 2015

GIGA-Neurosciences, University of Liège, C.H.U. Sart Tilman, Liège 4000, Belgium; Interdisciplinary Cluster for Applied Genoproteomics (GIGA-R), University of Liège, C.H.U. Sart Tilman, Liège 4000, Belgium; Walloon Excellence in Lifesciences and Biotechnology (WELBIO), University of Liège, C.H.U. Sart Tilman, Liège 4000, Belgium. Electronic address:

The cerebral cortex contains layers of neurons sequentially generated by distinct lineage-related progenitors. At the onset of corticogenesis, the first-born progenitors are apical progenitors (APs), whose asymmetric division gives birth directly to neurons. Later, they switch to indirect neurogenesis by generating intermediate progenitors (IPs), which give rise to projection neurons of all cortical layers.

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Elp3 drives Wnt-dependent tumor initiation and regeneration in the intestine.

J Exp Med

November 2015

Interdisciplinary Cluster for Applied Genoproteomics, University of Liège, 4000 Liège, Belgium Laboratory of Medical Chemistry, University of Liège, 4000 Liège, Belgium GIGA-Signal Transduction, University of Liège, 4000 Liège, Belgium Walloon Excellence in Life Sciences and Biotechnology, 1300 Wavre, Belgium

Tumor initiation in the intestine can rapidly occur from Lgr5(+) crypt columnar stem cells. Dclk1 is a marker of differentiated Tuft cells and, when coexpressed with Lgr5, also marks intestinal cancer stem cells. Here, we show that Elp3, the catalytic subunit of the Elongator complex, is required for Wnt-driven intestinal tumor initiation and radiation-induced regeneration by maintaining a subpool of Lgr5(+)/Dclk1(+)/Sox9(+) cells.

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APOBEC3 Interference during Replication of Viral Genomes.

Viruses

June 2015

Molecular and Cellular Epigenetics, Interdisciplinary Cluster for Applied Genoproteomics (GIGA) of University of Liège (ULg), B34, 1 avenue de L'Hôpital, Sart-Tilman Liège 4000, Belgium.

Co-evolution of viruses and their hosts has reached a fragile and dynamic equilibrium that allows viral persistence, replication and transmission. In response, infected hosts have developed strategies of defense that counteract the deleterious effects of viral infections. In particular, single-strand DNA editing by Apolipoprotein B Editing Catalytic subunits proteins 3 (APOBEC3s) is a well-conserved mechanism of mammalian innate immunity that mutates and inactivates viral genomes.

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EGFR and NF-κB: partners in cancer.

Trends Mol Med

June 2015

Interdisciplinary Cluster for Applied Genoproteomics (GIGA), Centre Hospitalier Universitaire (CHU), Sart-Tilman, Liege, Belgium; Laboratory of Medical Chemistry, University of Liege, CHU, Sart-Tilman, Liege, Belgium; GIGA-Signal Transduction, University of Liege, CHU, Sart-Tilman, Liege, Belgium; Walloon Excellence in Life Sciences and Biotechnology (WELBIO), Wavre, Belgium. Electronic address:

Oncogenic proteins cooperate to promote tumor development and progression by sustaining cell proliferation, survival and invasiveness. Constitutive epidermal growth factor receptor (EGFR) and nuclear factor κb (NF-κB) activities are seen in multiple solid tumors and combine to provide oncogenic signals to cancer cells. Understanding how these oncogenic pathways are connected is crucial, given their role in intrinsic or acquired resistance to targeted anticancer therapies.

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A role for APPL1 in TLR3/4-dependent TBK1 and IKKε activation in macrophages.

J Immunol

April 2015

Interdisciplinary Cluster of Applied Genoproteomics, GIGA-Research, Hospital University of Liege Sart-Tilman, University of Liege, 4000 Liege, Belgium; Laboratory of Medical Chemistry, Hospital University of Liege Sart-Tilman, University of Liege, 4000 Liege, Belgium; Unit of Signal Transduction, GIGA-Research, Hospital University of Liege Sart-Tilman, University of Liege, 4000 Liege, Belgium; Walloon Excellence in Life Sciences and Biotechnology, Hospital University of Liege Sart-Tilman, University of Liege, 4000 Liege, Belgium

Endosomes have important roles in intracellular signal transduction as a sorting platform. Signaling cascades from TLR engagement to IRF3-dependent gene transcription rely on endosomes, yet the proteins that specifically recruit IRF3-activating molecules to them are poorly defined. We show that adaptor protein containing a pleckstrin-homology domain, a phosphotyrosine-binding domain, and a leucine zipper motif (APPL)1, an early endosomal protein, is required for both TRIF- and retinoic acid-inducible gene 1-dependent signaling cascades to induce IRF3 activation.

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MicroRNA targeting of CoREST controls polarization of migrating cortical neurons.

Cell Rep

May 2014

GIGA-Neurosciences, University of Liège, C.H.U. Sart Tilman, Liège 4000, Belgium; Interdisciplinary Cluster for Applied Genoproteomics (GIGA-R), University of Liège, C.H.U. Sart Tilman, Liège 4000, Belgium; Walloon Excellence in Lifesciences and Biotechnology (WELBIO), University of Liège, C.H.U. Sart Tilman, Liège 4000, Belgium. Electronic address:

Article Synopsis
  • The migration of cortical projection neurons involves complex changes in cell shape and is crucial for brain development.
  • The study highlights the roles of specific microRNAs, namely miR-22 and miR-124, in regulating the movement and organization of these neurons during migration.
  • It reveals that these miRNAs affect the transcription of doublecortin, which is essential for the transformation of neuron shapes and maintaining proper polarity during the migration process.
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Massive depletion of bovine leukemia virus proviral clones located in genomic transcriptionally active sites during primary infection.

PLoS Pathog

May 2014

Molecular and Cellular Epigenetics, Interdisciplinary Cluster for Applied Genoproteomics (GIGA) of University of Liège (ULg), Sart-Tilman, Liège, Belgium ; Molecular and Cellular Biology, Gembloux Agro-Bio Tech, University of Liège (ULg), Gembloux, Belgium.

Deltaretroviruses such as human T-lymphotropic virus type 1 (HTLV-1) and bovine leukemia virus (BLV) induce a persistent infection that remains generally asymptomatic but can also lead to leukemia or lymphoma. These viruses replicate by infecting new lymphocytes (i.e.

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DERP6 (ELP5) and C3ORF75 (ELP6) regulate tumorigenicity and migration of melanoma cells as subunits of Elongator.

J Biol Chem

September 2012

Interdisciplinary Cluster for Applied Genoproteomics (GIGA-R), University of Liège, CHU, Sart-Tilman, B-4000 Liège, Belgium.

The Elongator complex is composed of 6 subunits (Elp1-Elp6) and promotes RNAPII transcript elongation through histone acetylation in the nucleus as well as tRNA modification in the cytoplasm. This acetyltransferase complex directly or indirectly regulates numerous biological processes ranging from exocytosis and resistance to heat shock in yeast to cell migration and neuronal differentiation in higher eukaryotes. The identity of human ELP1 through ELP4 has been reported but human ELP5 and ELP6 have remained uncharacterized.

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Preventive and therapeutic strategies for bovine leukemia virus: lessons for HTLV.

Viruses

July 2011

Molecular and Cellular Epigenetics, Interdisciplinary Cluster for Applied Genoproteomics (GIGA), University of Liège (ULg), 4000, Liège, Belgium.

Bovine leukemia virus (BLV) is a retrovirus closely related to the human T-lymphotropic virus type 1 (HTLV-1). BLV is a major animal health problem worldwide causing important economic losses. A series of attempts were developed to reduce prevalence, chiefly by eradication of infected cattle, segregation of BLV-free animals and vaccination.

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Elongator - an emerging role in neurological disorders.

Trends Mol Med

January 2010

Interdisciplinary Cluster for Applied Genoproteomics (GIGA-Research), University of Liège, C.H.U. Sart Tilman, Liège, Belgium.

Neurological disorders are becoming a major public health issue in our aging society. An important objective is to understand the molecular events that underlie these diseases to prevent their onset and/or halt their progression. Acetylation of alpha-tubulin is a post-translational modification of microtubules that serves as a recognition signal for the anchoring of molecular motors and, as such, underlies the transport of various proteins or organelles in neurons.

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The NF-kappaB-independent functions of IKK subunits in immunity and cancer.

Trends Cell Biol

August 2009

Interdisciplinary Cluster for Applied Genoproteomics (GIGA-R), GIGA-Signal Transduction, Laboratory of Medical Chemistry, CHU, Sart-Tilman, University of Liege, Belgium.

The I kappaB kinase (IKK) complex is involved in transcriptional activation by phosphorylating the inhibitory molecule I kappaB alpha, a modification that triggers its subsequent degradation, enabling activation of nuclear factor kappa B (NF-kappaB). Importantly, recent reports indicate that multiple cytoplasmic and nuclear proteins distinct from the NF-kappaB and I kappaB proteins are phosphorylated by the catalytic subunits of the IKK complex, IKK alpha or IKK beta. Here, I describe how IKK subunits can have crucial roles in allergy, inflammation and immunity by targeting proteins such as SNAP23 and IRF7, but also in cancer by phosphorylating key molecules such as p53, TSC1 and FOXO3a through NF-kappaB-independent pathways.

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