Post-fire forest floor succession in a Central European temperate forest depends on organic matter input from recovering vegetation rather than on pyrogenic carbon input from fire.

The predicted global increase in the frequency, severity, and intensity of forest fires includes Central Europe, which is not currently considered as a wildfire hotspot. Because of this, a detailed knowledge of long-term post-fire forest floor succession is essential for understanding the role of wildfires in Central European temperate forests. In this study, we used a space-for-time substitution approach and exploited a unique opportunity to observe successional changes in the physical, chemical, and microbial properties of the forest floor in coniferous forest stands on a chronosequence up to 110 years after fire.

Bladder cancer is associated with decreased urinary microbiota diversity and alterations in microbial community composition.

Introduction: Human urine microbiota (UM) research has uncovered associations between composition of microbial communities of the lower urinary tract and various disease states including several reports on the putative link between UM and bladder cancer (BC). The aim of this study was to investigate male UM in patients with BC and controls using catheterised urine specimens unlike in previous studies.

Methods: Urine samples were obtained in theatre after surgical prepping and draping using aseptic catheterisation.

Contrasting catchment soil pH and Fe concentrations influence DOM distribution and nutrient dynamics in freshwater systems.

Organic matter (OM) quantity, quality, and nutrient dynamics within twelve shallow lakes in the Czech Republic were assessed in the context of catchment soil pH and iron (Fe) concentration. The catchments of the lakes were classified into two categories: (i) slightly acidic (soil pH = 5.1-6.

DNA-, RNA-, and Protein-Based Stable-Isotope Probing for High-Throughput Biomarker Analysis of Active Microorganisms.

Stable-isotope probing (SIP) enables researchers to target active populations within complex microbial communities, which is achieved by providing growth substrates enriched in heavy isotopes, usually in the form of C, O, or N. After growth on the substrate and subsequent extraction of microbial biomarkers, typically nucleic acids or proteins, the SIP technique is used for the recovery and analysis of isotope-labelled biomarkers from active microbial populations. In the years following the initial development of DNA- and RNA-based SIP, it was common practice to characterize labelled populations by targeted gene analysis.

The Effect of Microbial Diversity and Biomass on Microbial Respiration in Two Soils along the Soil Chronosequence.

Microbial diversity plays an important role in the decomposition of soil organic matter. However, the pattern and drivers of the relationship between microbial diversity and decomposition remain unclear. In this study, we followed the decomposition of organic matter in soils where microbial diversity was experimentally manipulated.

Global distribution of soil fauna functional groups and their estimated litter consumption across biomes.

Soil invertebrates (i.e., soil fauna) are important drivers of many key processes in soils including soil aggregate formation, water retention, and soil organic matter transformation.

De novo metatranscriptomic exploration of gene function in the millipede holobiont.

Invertebrate-microbial associations are widespread in the biosphere and are often related to the function of novel genes, fitness advantages, and even speciation events. Despite ~ 13,000 species of millipedes identified across the world, millipedes and their gut microbiota are markedly understudied compared to other arthropods. Exploring the contribution of individual host-associated microbes is often challenging as many are uncultivable.

Three new species of Pergalumna (Acari, Oribatida, Galumnidae) from Malawi, with updated identification key to known species of the genus from the Afrotropical region.

Three new species of Pergalumna (Pergalumna) (Oribatida, Galumnidae)P. (P.) dedzaensis sp.

Gut microbiome reflect adaptation of earthworms to cave and surface environments.

Background: Caves are special natural laboratories for most biota and the cave communities are unique. Establishing population in cave is accompanied with modifications in adaptability for most animals. To date, little is known about the survival mechanisms of soil animals in cave environments, albeit they play vital roles in most terrestrial ecosystems.

Evaluation and comparison of antibiotic susceptibility profiles of Streptomyces spp. from clinical specimens revealed common and region-dependent resistance patterns.

Notwithstanding the fact that streptomycetes are overlooked in clinical laboratories, studies describing their occurrence in disease and potential pathogenicity are emerging. Information on their species diversity in clinical specimens, aetiology and appropriate therapeutic treatment is scarce. We identified and evaluated the antibiotic susceptibility profile of 84 Streptomyces clinical isolates from the Czech Republic.

Earthworms as catalysts in the formation and stabilization of soil microbial necromass.

Microbial necromass is a central component of soil organic matter (SOM), whose management may be essential in mitigating atmospheric CO concentrations and climate change. Current consensus regards the magnitude of microbial necromass production to be heavily dependent on the carbon use efficiency of microorganisms, which is strongly influenced by the quality of the organic matter inputs these organisms feed on. However, recent concepts neglect agents relevant in many soils: earthworms.

Soil Properties Interacting With Microbial Metagenome in Decreasing CH Emission From Seasonally Flooded Marshland Following Different Stages of Afforestation.

Wetlands are the largest natural source of terrestrial CH emissions. Afforestation can enhance soil CH oxidation and decrease methanogenesis, yet the driving mechanisms leading to these effects remain unclear. We analyzed the structures of communities of methanogenic and methanotrophic microbes, quantification of A and A genes, the soil microbial metagenome, soil properties and CH fluxes in afforested and non-afforested areas in the marshland of the Yangtze River.

Depth profiles of soil organic carbon isotopes across a lithosequence: implications for drivers of soil C vertical changes.

To addresshow parent materials are affecting organic carbon dynamics in a soil profile, soils from a lithosequence comprising six parent lithologies under a rangeland ecosystem have been explored at three depth intervals for soil organic carbon (SOC) content and its C depth trends. Studied parent materials ranged from metamorphic (foliated: FM and non-foliated: NFM) to sedimentary (clastic carbonate: CCS) to plutonic (intermediate: IP, felsic: FP and intermediate felsic: IFP) geological contexts. The relationship between SOC concentration and its isotopic signatures to a depth of 50 cm in FM, NFM, FP and IFP profiles was well described by the kinetic fractionation of SOC during biodegradation.

Microbial phylogenetic relatedness links to distinct successional patterns of bacterial and fungal communities.

The mechanisms underlying microbial community dynamics and co-occurrence patterns along ecological succession are crucial for understanding ecosystem recovery but remain largely unexplored. Here, we investigated community dynamics and taxa co-occurrence patterns in bacterial and fungal communities across a well-established chronosequence of post-mining lands spanning 54 years of recovery. Bacterial community structures became increasingly phylogenetically clustered with soil age at early successional stages and varied less at later successional stages.

Drivers of Collembola assemblages along an altitudinal gradient in northeast China.

Altitudinal changes in the diversity of plants and animals have been well documented; however, soil animals received little attention in this context and it is unclear whether their diversity follows general altitudinal distribution patterns. Changbai Mountain is one of few well-conserved mountain regions comprising natural ecosystems on the Eurasian continent. Here, we present a comprehensive analysis of the diversity and community composition of Collembola along ten altitudinal sites representing five vegetation types from forest to alpine tundra.

Ectomycorrhizal fungi mediate belowground carbon transfer between pines and oaks.

Inter-kingdom belowground carbon (C) transfer is a significant, yet hidden, biological phenomenon, due to the complexity and highly dynamic nature of soil ecology. Among key biotic agents influencing C allocation belowground are ectomycorrhizal fungi (EMF). EMF symbiosis can extend beyond the single tree-fungus partnership to form common mycorrhizal networks (CMNs).

Bee year: Basic physiological strategies to cope with seasonality.

Worker honey bees are subject to biochemical and physiological changes throughout the year. This study aimed to provide the reasons behind these fluctuations. The markers analysed included lipid, carbohydrate, and protein levels in the haemolymph; the activity of digestive enzymes in the midgut; the levels of adipokinetic hormone (AKH) in the bee central nervous system; the levels of vitellogenins in the bee venom and haemolymph; and the levels of melittin in the venom.

Photochemical (UV-vis/HO) degradation of carotenoids: Kinetics and molecular end products.

Constraining the formation mechanisms of organic matter that persists in aquatic reservoirs is important for determining the reactivity and fate of carbon and nutrients in these environments. Recent studies have linked dissolved organic matter (DOM) accumulating in the ocean to linear terpenoid structures, and carotenoid degradation products have been proposed as potential precursors. The prevalence of reactive oxygen species in aquatic environments and their potential to be quenched by carotenoids led us to examine radical-assisted photochemical degradation of carotenoids as a potential mechanism for DOM formation and transformation.

Tenebriella gen. nov. - The dark twin of Oscillatoria.

Oscillatoria has long been known to be polyphyletic. After recent resequencing of the reference strain for this genus, many Oscillatoria-like groups phylogenetically distant from the type species O. princeps remained unresolved.

Dynamics of Soil Bacterial and Fungal Communities During the Secondary Succession Following Swidden Agriculture IN Lowland Forests.

Elucidating dynamics of soil microbial communities after disturbance is crucial for understanding ecosystem restoration and sustainability. However, despite the widespread practice of swidden agriculture in tropical forests, knowledge about microbial community succession in this system is limited. Here, amplicon sequencing was used to investigate effects of soil ages (spanning at least 60 years) after disturbance, geographic distance (from 0.

Methanogenesis in the Digestive Tracts of the Tropical Millipedes Archispirostreptus gigas (Diplopoda, Spirostreptidae) and Epibolus pulchripes (Diplopoda, Pachybolidae).

Methanogens represent the final decomposition step in anaerobic degradation of organic matter, occurring in the digestive tracts of various invertebrates. However, factors determining their community structure and activity in distinct gut sections are still debated. In this study, we focused on the tropical millipede species Archispirostreptus gigas (Diplopoda, Spirostreptidae) and Epibolus pulchripes (Diplopoda, Pachybolidae), which release considerable amounts of methane.

Multidimensional trophic niche revealed by complementary approaches: Gut content, digestive enzymes, fatty acids and stable isotopes in Collembola.

Trophic niche differentiation may explain coexistence and shape functional roles of species. In complex natural food webs, however, trophic niche parameters depicted by single and isolated methods may simplify the multidimensional nature of consumer trophic niches, which includes feeding processes such as food choice, ingestion, digestion, assimilation and retention. Here we explore the correlation and complementarity of trophic niche parameters tackled by four complementary methodological approaches, that is, visual gut content, digestive enzyme, fatty acid and stable isotope analyses-each assessing one or few feeding processes, and demonstrate the power of method combination.

Soil microbial interconnections along ecological restoration gradients of lowland forests after slash-and-burn agriculture.

Microbial interconnections in soil are pivotal to ecosystem services and restoration. However, little is known about how soil microbial interconnections respond to slash-and-burn agriculture and to the subsequent ecosystem restoration after the practice. Here, we used amplicon sequencing and co-occurrence network analyses to explore the interconnections within soil bacterial and fungal communities in response to slash-and-burn practice and a spontaneous restoration (spanning ca.