477 results match your criteria: "Institute of Science and Technology Information[Affiliation]"

Article Synopsis
  • The study investigates compact binary coalescences with at least one component mass between 0.2 and 1.0 solar masses using data from Advanced LIGO and Advanced Virgo detectors over six months in 2019, but they found no significant gravitational wave candidates.
  • The analysis leads to an upper limit on the merger rate of subsolar binaries ranging from 220 to 24,200 Gpc⁻³ yr⁻¹, based on the detected signals’ false alarm rate.
  • The researchers use these limits to set new constraints on two models for subsolar-mass compact objects: primordial black holes (suggesting they make up less than 6% of dark matter) and
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Waste management is one of the challenges facing countries globally, leading to the need for innovative ways to design and operationalize smart waste bins for effective waste collection and management. The inability of extant waste bins to facilitate sorting of solid waste at the point of collection and the attendant impact on waste management process is the motivation for this study. The South African University of Technology (SAUoT) is used as a case study because solid waste management is an aspect where SAUoT is exerting an impact by leveraging emerging technologies.

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Scintillation light detection in the 6-m drift-length ProtoDUNE Dual Phase liquid argon TPC.

Eur Phys J C Part Fields

July 2022

Fermi National Accelerator Laboratory, Batavia, IL 60510 USA.

DUNE is a dual-site experiment for long-baseline neutrino oscillation studies, neutrino astrophysics and nucleon decay searches. ProtoDUNE Dual Phase (DP) is a 6   6   6 m liquid argon time-projection-chamber (LArTPC) that recorded cosmic-muon data at the CERN Neutrino Platform in 2019-2020 as a prototype of the DUNE Far Detector. Charged particles propagating through the LArTPC produce ionization and scintillation light.

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Three-dimensional chromatin interactions regulate gene expressions. The significance of de novo mutations (DNMs) in chromatin interactions remains poorly understood for autism spectrum disorder (ASD). We generated 813 whole-genome sequences from 242 Korean simplex families to detect DNMs, and identified target genes which were putatively affected by non-coding DNMs in chromatin interactions.

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Early exposures to anesthetics can cause long-lasting changes in excitatory/inhibitory synaptic transmission (E/I imbalance), an important mechanism for neurodevelopmental disorders. Since E/I imbalance is also involved with addiction, we further investigated possible changes in addiction-related behaviors after multiple ketamine anesthesia in late postnatal mice. Postnatal day (PND) 16 mice received multiple ketamine anesthesia (35 mg kg, 5 days), and behavioral changes were evaluated at PND28 and PND56.

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Analysis of the docking property of host variants of hACE2 for SARS-CoV-2 in a large cohort.

PLoS Comput Biol

July 2022

Division of Supercomputing, Center for supercomputing application and research, Korea Institute of Science and Technology Information (KISTI), Daejeon, South Korea.

The recent novel coronavirus disease (COVID-19) outbreak, caused by severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), is threatening global health. However, an understanding of the interaction of SARS-CoV-2 with human cells, including the physical docking property influenced by the host's genetic diversity, is still lacking. Here, based on germline variants in the UK Biobank covering 502,543 individuals, we revealed the molecular interactions between human angiotensin-converting enzyme 2 (hACE2), which is the representative receptor for SARS-CoV-2 entry, and COVID-19 infection.

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The study of nuclei and antinuclei production has proven to be a powerful tool to investigate the formation mechanism of loosely bound states in high-energy hadronic collisions. The first measurement of the production of _{Λ}^{3}H in p-Pb collisions at sqrt[s_{NN}]=5.02  TeV is presented in this Letter.

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Background: Sepsis is diagnosed in millions of people every year, resulting in a high mortality rate. Although patients with sepsis present multimorbid conditions, including cancer, sepsis predictions have mainly focused on patients with severe injuries.

Objective: In this paper, we present a machine learning-based approach to identify the risk of sepsis in patients with cancer using electronic health records (EHRs).

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Medicinal plants have demonstrated therapeutic potential for applicability for a wide range of observable characteristics in the human body, known as "phenotype," and have been considered favorably in clinical treatment. With an ever increasing interest in plants, many researchers have attempted to extract meaningful information by identifying relationships between plants and phenotypes from the existing literature. Although natural language processing (NLP) aims to extract useful information from unstructured textual data, there is no appropriate corpus available to train and evaluate the NLP model for plants and phenotypes.

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NGS data vectorization, clustering, and finding key codons in SARS-CoV-2 variations.

BMC Bioinformatics

May 2022

Department of Data-Centric Problem Solving Research, Korea Institute of Science and Technology Information, Yuseong-gu, Daejeon, Korea.

The rapid global spread and dissemination of SARS-CoV-2 has provided the virus with numerous opportunities to develop several variants. Thus, it is critical to determine the degree of the variations and in which part of the virus those variations occurred. Therefore, in this study, methods that could be used to vectorize the sequence data, perform clustering analysis, and visualize the results were proposed using machine learning methods.

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Partially Globular Conformations from Random Charge Sequences.

ACS Macro Lett

March 2022

Collège de France 11, place Marcelin-Berthelot 75231 Cedex 05 Paris, France.

Overall charged polymers with quenched charge sequences often adopt partially globular structures which result from the interplay between the disorder in charge sequences and thermal fluctuations. Simple energetic considerations show that structures consisting of alike (equal-size-equal-charge) globules are not favorable: the structures are intrinsically heterogeneous. We predict the globule distributions with the lowest energies in the size-charge space.

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The polarization of the Λ and Λ[over ¯] hyperons along the beam (z) direction, P_{z}, has been measured in Pb-Pb collisions at sqrt[s_{NN}]=5.02  TeV recorded with ALICE at the Large Hadron Collider (LHC). The main contribution to P_{z} comes from elliptic flow-induced vorticity and can be characterized by the second Fourier sine coefficient P_{z,s2}=⟨P_{z}sin(2φ-2Ψ_{2})⟩, where φ is the hyperon azimuthal emission angle and Ψ_{2} is the elliptic flow plane angle.

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Article Synopsis
  • The study investigates the two proteins, CYFIP1 and CYFIP2, which have similar structures but different functions in the brain and are linked to various brain disorders.
  • Experiments show that these proteins do not interact significantly with each other and have distinct distributions in brain cells, with CYFIP1 found in both neurons and astrocytes while CYFIP2 is primarily in neurons.
  • Analysis of the proteins they interact with indicates that CYFIP1 is specifically associated with astrocytic focal adhesion, suggesting a unique role for CYFIP1 in brain function that differs from CYFIP2.
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Gate-Tuned Gas Molecule Sensitivity of a Two-Dimensional Semiconductor.

ACS Appl Mater Interfaces

May 2022

Department of Physics, Chungnam National University, 99 Daehak-ro, Yuseong-gu, Daejeon, 34134, Korea.

In this work, we develop a gate-tunable gas sensor based on a MoS/hBN heterostructure field effect transistor. Through experimental measurements and numerical simulations, we systematically reveal a principle that relates the concentration of the target gas and sensing signals (Δ/) as a function of gate bias. Because a linear relationship between Δ/ and the gas concentration guarantees reliable sensor operation, the optimal gate bias condition for linearity was investigated.

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The measurement of two-particle angular correlation functions in high-multiplicity e^{+}e^{-} collisions at sqrt[s]=10.52  GeV is reported. In this study, the 89.

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Machine learning (ML) approaches have enabled rapid and efficient molecular property predictions as well as the design of new novel materials. In addition to great success for molecular problems, ML techniques are applied to various chemical reaction problems that require huge costs to solve with the existing experimental and simulation methods. In this review, starting with basic representations of chemical reactions, we summarized recent achievements of ML studies on two different problems; predicting reaction properties and synthetic routes.

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An easy prepared probe, , was designed and synthesized, which displayed a significant fluorescence enhancement (over 38-fold) and obvious color change in the recognition of Al. The binding ratio of probe to Al was determined as 1:1, according to Job plot. The binding mechanism was fully clarified by the experiments, such as FT-IR spectrum, ESI-MS analysis, and H NMR titration.

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For fast density functional calculations, a suitable basis that can accurately represent the orbitals within a reasonable number of dimensions is essential. Here, we propose a new type of basis constructed from Tucker decomposition of a finite-difference (FD) Hamiltonian matrix, which is intended to reflect the system information implied in the Hamiltonian matrix and satisfies orthonormality and separability conditions. By introducing the system-specific separable basis, the computation time for FD density functional calculations for seven two- and three-dimensional periodic systems was reduced by a factor of 2-71 times, while the errors in both the atomization energy per atom and the band gap were limited to less than 0.

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SPICA Force Field for Proteins and Peptides.

J Chem Theory Comput

May 2022

Department of Materials Chemistry, Nagoya University, Furo-cho, Chikusa-ku, Nagoya 464-8603, Japan.

A coarse-grained (CG) model for peptides and proteins was developed as an extension of the Surface Property fItting Coarse grAined (SPICA) force field (FF). The model was designed to examine membrane proteins that are fully compatible with the lipid membranes of the SPICA FF. A preliminary version of this protein model was created using thermodynamic properties, including the surface tension and density in the SPICA (formerly called SDK) FF.

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Permutation testing is a robust and popular approach for significance testing in genomic research that has the advantage of reducing inflated type 1 error rates; however, its computational cost is notorious in genome-wide association studies (GWAS). Here, we developed a supercomputing-aided approach to accelerate the permutation testing for GWAS, based on the message-passing interface (MPI) on parallel computing architecture. Our application, called MPI-GWAS, conducts MPI-based permutation testing using a parallel computing approach with our supercomputing system, Nurion (8,305 compute nodes, and 563,740 central processing units [CPUs]).

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High-precision measurement of the boson mass with the CDF II detector.

Science

April 2022

Istituto Nazionale di Fisica Nucleare Bologna, I-40127 Bologna, Italy.

Article Synopsis
  • The Higgs boson, crucial for the standard model of particle physics, helps mediate the weak force between elementary particles, and its mass is closely regulated by the model's symmetries.
  • Researchers measured the mass of the boson using data from proton-antiproton collisions at the Tevatron collider, accumulating about 4 million candidates to achieve a very precise measurement.
  • This new mass measurement shows a significant discrepancy with what is expected from the standard model, suggesting potential gaps in our current understanding of particle physics.
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The high disease burden of influenza in elderly and chronically ill adults may be due to the suboptimal effectiveness and mismatch of the conventional trivalent influenza vaccine (TIV). This study evaluated the cost-effectiveness of quadrivalent (QIV), adjuvanted trivalent (ATIV), and high-dose quadrivalent (HD-QIV) vaccines versus TIV used under the current Korean National Immunization Program (NIP) in older adults aged ≥65 years. We also evaluated the cost-effectiveness of programs for at-risk adults aged 19-64 and adults aged 50-64.

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Article Synopsis
  • This article discusses the analysis of groomed jet substructure in proton-proton (pp) and lead-lead (Pb-Pb) collisions using the ALICE detector at a collision energy of 5.02 TeV.
  • The study employs a soft drop grooming algorithm to isolate hard parton splittings and measures the groomed jet momentum splitting fraction and radius, revealing distinct behavior in jet structure under different collision conditions.
  • Notably, a narrowing of the groomed jet radius distribution in Pb-Pb collisions suggests changes in jet angular structure due to quark-gluon plasma, while no significant differences are observed in momentum splitting fractions, contributing valuable insights into jet energy-loss mechanisms.
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Article Synopsis
  • * Research on mutant mice (both heterozygous and homozygous) shows distinct behavioral differences in areas like movement, repetitive actions, and memory.
  • * The study also reveals varying gene expression changes related to synapses and neurological conditions, indicating that different genetic mutations lead to specific behavioral and molecular outcomes.
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New drug development guarantees a very high return on success, but the success rate is extremely low. Pharmaceutical companies have attempted to use various strategies to increase the success rate of drug development, but this goal has been difficult to achieve. In this study, we developed a model that can guide effective decision-making at the planning stage of new drug development by leveraging machine learning.

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