Microbial functional diversity and redundancy: moving forward.

Microbial functional ecology is expanding as we can now measure the traits of wild microbes that affect ecosystem functioning. Here, we review techniques and advances that could be the bedrock for a unified framework to study microbial functions. These include our newfound access to environmental microbial genomes, collections of microbial traits, but also our ability to study microbes' distribution and expression.

The re-use of offshore platforms as ecological observatories.

The high number of offshore platforms at the end of their productive phase offers the opportunity of their re-use and the development of effective management solutions, such as the possibility of utilizing them as ecological observatories for monitoring marine ecosystems and their biological resources. Here, through a multiparametric observatory deployed at an unproductive offshore platform, located in the Central Adriatic Sea (Mediterranean Sea), we collected data for 13 months on benthopelagic fish assemblage and habitat conditions. A total of 155.

From the depths to the apex: Tracing the organophosphate ester journey through marine food webs.

This study explores the behavior of organophosphate esters (OPEs) in different species within marine ecosystems and their potential for bioaccumulation and biomagnification. The concentrations of OPEs were analyzed in marine species (krill (Meganyctiphanes norvegica), jellyfish (Pelagia noctiluca), European sardine (Sardina pilchardus), European anchovy (Engraulis encrasicolus), European hake (Merluccius merluccius), loggerhead turtle (Caretta caretta), European squid (Loligo vulgaris), fin whale (Balaenoptera physalus) and striped dolphin (Stenella coeruleoalba)) from different trophic levels, to understand their distribution and contamination profiles. The study provides insights into the metabolism of OPEs and their biomagnification on species occupying higher trophic levels.

Direct and indirect effects of copepod grazers on community structure.

Ecological theory and empirical research show that both direct lethal effects and indirect non-lethal effects can structure the composition of communities. While the direct effects of grazers on marine phytoplankton communities are well studied, their indirect effects are still poorly understood. Direct and indirect effects are inherently difficult to disentangle in plankton food webs.

Skeletal magnesium content in Antarctic echinoderms along a latitudinal gradient.

Ocean warming and acidification driven by anthropogenic CO emissions may impact the mineral composition of marine calcifiers. Species with high skeletal Mg content could be more susceptible in polar regions due to the increased solubility of CO at lower temperatures. We aimed to assess the environmental influence on skeletal Mg content of Antarctic echinoderms belonging to Asteroidea, Ophiuroidea, Echinoidea and Holothuroidea classes, along a latitudinal gradient from the South Shetland Islands to Rothera (Adelaide Island).

Harmful Ostreopsis cf. ovata blooms could extend in time span with climate change in the Western Mediterranean Sea.

Fast environmental changes and high coastal human pressures and impacts threaten the Mediterranean Sea. Over the last decade, recurrent blooms of the harmful dinoflagellate Ostreopsis cf. ovata have been recorded in many Mediterranean beaches.

Epigenetic alterations affecting hematopoietic regulatory networks as drivers of mixed myeloid/lymphoid leukemia.

Leukemias with ambiguous lineage comprise several loosely defined entities, often without a clear mechanistic basis. Here, we extensively profile the epigenome and transcriptome of a subgroup of such leukemias with CpG Island Methylator Phenotype. These leukemias exhibit comparable hybrid myeloid/lymphoid epigenetic landscapes, yet heterogeneous genetic alterations, suggesting they are defined by their shared epigenetic profile rather than common genetic lesions.

Future trends of marine fish biomass distributions from the North Sea to the Barents Sea.

Climate warming is one of the facets of anthropogenic global change predicted to increase in the future, its magnitude depending on present-day decisions. The north Atlantic and Arctic Oceans are already undergoing community changes, with warmer-water species expanding northwards, and colder-water species retracting. However, the future extent and implications of these shifts remain unclear.

Proof of concept for a new sensor to monitor marine litter from space.

Worldwide, governments are implementing strategies to combat marine litter. However, their effectiveness is largely unknown because we lack tools to systematically monitor marine litter over broad spatio-temporal scales. Metre-sized aggregations of floating debris generated by sea-surface convergence lines have been reported as a reliable target for detection from satellites.

Ice phenology interactions with water and air temperatures in high mountain lakes.

Ice phenology is of great importance for the thermal structure of lakes and ponds and the biology of lake species. Under the current climate change conditions, ice-cover duration has been reduced by an advance in ice-off, and a delay in ice-on, and future projections foresee this trend as continuing. Here, we describe the current ice phenology of Pyrenean high mountain lakes and ponds, including ice-cover duration and ice-on and ice-off dates.

Simulated Sea Surface Salinity Data from a 1/48° Ocean Model.

To study the validation process for sea surface salinity (SSS) we have generated one year (November 2011- October 2012) of simulated satellite and in situ "ground truth" data. This was done using the ECCO (Estimating the Circulation and Climate of the Oceans) 1/48° simulation, the highest resolution global ocean model currently available. The ground tracks of three satellites, Aquarius, SMAP (Soil Moisture Active Passive) and SMOS (Soil Moisture and Ocean Salinity) were extracted and used to sample the model with a gaussian weighting similar to that of the spaceborne sensor ground footprint.

A protocol for harvesting biodiversity data from Facebook.

The expanding use of community science platforms has led to an exponential increase in biodiversity data in global repositories. Yet, understanding of species distributions remains patchy. Biodiversity data from social media can potentially reduce the global biodiversity knowledge gap.

Ecotype-Specific and Correlated Seasonal Responses of Biomass Production, Non-Structural Carbohydrates, and Fatty Acids in .

Seagrasses, which are marine flowering plants, provide numerous ecological services and goods. is the most widely distributed seagrass in temperate regions of the northern hemisphere, tolerant of a wide range of environmental conditions. This study aimed to (i) examine seasonal trends and correlations between key seagrass traits such as biomass production and biochemical composition, and (ii) compare seasonal adaptation of two ecotypes of exposed to similar environmental conditions on the west coast of Ireland.

Skeletal Mg content in common echinoderm species from Deception and Livingston Islands (South Shetland Islands, Antarctica) in the context of global change.

Echinoderms with high levels of magnesium (Mg) in their skeletons may be especially sensitive to ocean acidification, as the solubility of calcite increases with its Mg content. However, other structural characteristics and environmental/biological factors may affect skeletal solubility. To better understand which factors can influence skeletal mineralogy, we analyzed the Mg content of Antarctic echinoderms from Deception Island, an active volcano with reduced pH and relatively warm water temperatures, and Livingston Island.

Assessing mercury contamination in Southern Hemisphere marine ecosystems: The role of penguins as effective bioindicators.

Mercury (Hg) is a global pollutant known for its significant bioaccumulation and biomagnification capabilities, posing a particular threat to marine environments. Seabirds have been recognized as effective bioindicators of marine pollution, and, among them, penguins present a unique opportunity to serve as a single taxonomic group (Sphenisciformes) for monitoring Hg across distinct marine ecosystems in the Southern Hemisphere. In this study, we conducted a comprehensive systematic review of Hg concentrations, and performed a meta-analysis that took into account the various sources of uncertainty associated with Hg contamination in penguins.

Functional redundancy of seasonal vitamin B biosynthesis pathways in coastal marine microbial communities.

Vitamin B (cobalamin) is a major cofactor required by most marine microbes, but only produced by a few prokaryotes in the ocean, which is globally B -depleted. Despite the ecological importance of B , the seasonality of B metabolisms and the organisms involved in its synthesis in the ocean remain poorly known. Here we use metagenomics to assess the monthly dynamics of B -related pathways and the functional diversity of associated microbial communities in the coastal NW Mediterranean Sea over 7 years.

Retrospective analysis of the pelagic ecosystem of the Western Mediterranean Sea: Drivers, changes and effects.

In the Western Mediterranean Sea, forage fishes have changed in abundance, body condition, growth, reproduction, and distribution in the last decades. Different hypotheses have been proposed to explain these changes, including increase in fishing mortality; changes in environmental conditions affecting species fitness, and planktonic productivity and quality; recovery of top predators; and increase in competitors. We investigated the main drivers and changes of the pelagic ecosystem and their effects using an ecosystem-based modelling approach.

Increasing risk of invasions by organisms on marine debris in the Southeast coast of India.

Increasing amount of anthropogenic litter in the marine environment has provided an enormous number of substrates for a wide range of marine organisms, thus serving as a potential vector for the transport of fouling organisms. Here, we examined the fouling organisms on different types of stranded litter (plastic, glass, rubber, foam sponge, cloth, metal and wood) on eight beaches along the southeast coast of India. In total, 17 encrusting species belonging to seven phyla (Arthropoda, Bryozoa, Mollusca, Annelida, Cnidaria, Chlorophyta and Foraminifera) were identified on 367 items, with one invasive species, the mussel Mytella strigata, detected.

Using social media records to inform conservation planning.

Citizen science plays a crucial role in helping monitor biodiversity and inform conservation. With the widespread use of smartphones, many people share biodiversity information on social media, but this information is still not widely used in conservation. Focusing on Bangladesh, a tropical megadiverse and mega-populated country, we examined the importance of social media records in conservation decision-making.

Characterization of p38α autophosphorylation inhibitors that target the non-canonical activation pathway.

p38α is a versatile protein kinase that can control numerous processes and plays important roles in the cellular responses to stress. Dysregulation of p38α signaling has been linked to several diseases including inflammation, immune disorders and cancer, suggesting that targeting p38α could be therapeutically beneficial. Over the last two decades, numerous p38α inhibitors have been developed, which showed promising effects in pre-clinical studies but results from clinical trials have been disappointing, fueling the interest in the generation of alternative mechanisms of p38α modulation.

Maternal provisioning of an obligate symbiont in a sponge.

The transmission of microbes from mother to offspring is an ancient, advantageous, and widespread feature of metazoan life history. Despite this, little is known about the quantitative strategies taken to maintain symbioses across generations. The quantity of maternal microbes that is provided to each offspring through vertical transmission could theoretically be stochastic (no trend), consistent (an optimal range is allocated), or provisioned (a trade-off with fecundity).

Primer design for the amplification of the ammonium transporter genes from the uncultured haptophyte algal species symbiotic with the marine nitrogen-fixing cyanobacterium UCYN-A1.

The multiple symbiotic partnerships between closely related species of the haptophyte algae and the nitrogen-fixing cyanobacteria Atelocyanobacterium thalassa (UCYN-A) contribute importantly to the nitrogen and carbon cycles in vast areas of the ocean. The diversity of the eukaryotic 18S rDNA phylogenetic gene marker has helped to identify some of these symbiotic haptophyte species, yet we still lack a genetic marker to assess its diversity at a finer scale. One of such genes is the ammonium transporter () gene, which encodes the protein that might be involved in the uptake of ammonium from UCYN-A in these symbiotic haptophytes.

Progress on the Link between Nutrient Availability and Toxin Production by cf. : Field and Laboratory Experiments.

This study aimed to improve the understanding of the nutrient modulation of cf. toxin content. During the 2018 natural bloom in the NW Mediterranean, the total toxin content (up to ca.