From genotype to phenotype in bovine functional genomics.

In past 5 years, the promise that came with genome sequencing has revolutionized the functional genomics research field at unprecedented manner. It would soon know what all known genes do, particularly genes involved in genetic improvement of animal health and increase food animal production. With the availability of full bovine genomic sequence, yet we still have a lot of daunting tasks on 'genotype-to-phenotype problem' particularly about the phenotypic variations and trying to predict what genes are likely to be involved, and improved integrated interactive database.

A pre-embedding immunogold approach reveals localization of myosin VI at the ultrastructural level in the actin cones that mediate Drosophila spermatid individualization.

Stable actin structures play important roles in the development and specialization of differentiated cells. How these structures form, are organized, and are used to mediate physiological processes is not well understood in most cases. In Drosophila testis, stable actin structures, called actin cones, mediate spermatid individualization, a large-scale cellular remodeling process.

Social thermoregulation and torpor in the Siberian hamster.

Social thermoregulation and huddling bring about energy benefits to animals sharing a nest because of the smaller surface-to-volume ratio of a huddle and the higher local temperature in the nest. We tested whether living in groups and huddling affect daily torpor, metabolic rate and seasonal changes in the body mass of a small heterothermic rodent, the Siberian hamster (Phodopus sungorus), housed under semi-natural conditions both singly and in groups of four litter-mates. We predicted that in hamsters housed in groups: (1) synchronized torpor bouts would be longer and deeper than non-synchronized ones but shallower than in solitary hamsters, (2) seasonal variations in metabolic rate would be lower than in solitary hamsters, and (3) the winter decrease in body mass would be smaller in grouped than in singly housed hamsters.

[Small, monomeric G proteins in plants].

The superfamily of small, monomeric GTP-binding proteins, in Arabidopsis thaliana comprising 93 members, is classified into four families: Arf/Sar, Rab, Rop/Rac, and Ran families. All monomeric G proteins function as molecular switches that are activated by GTP and inactivated by the hydrolysis of GTP to GDP. GTP/GDP cycling is controlled by three classes of regulatory protein: guanine-nucleotide-exchange factors (GEFs), GTPase-activating proteins (GAPs), and guanine-nucleotide-dissociation inhibitors (GDIs).

Localisation pattern of homogalacturonan and arabinogalactan proteins in developing ovules of the gymnosperm plant Larix decidua Mill.

We have identified and characterised the temporal and spatial distribution of the homogalacturonan (HG) and arabinogalactan proteins (AGP) epitopes that are recognised by the antibodies JIM5, JIM7, LM2, JIM4, JIM8 and JIM13 during ovule differentiation in Larix decidua Mill. The results obtained clearly show differences in the pattern of localisation of specific HG epitopes between generative and somatic cells of the ovule. Immunocytochemical studies revealed that the presence of low-esterified HG is characteristic only of the wall of megasporocyte and megaspores.

Quantitative measurements of formalin-induced fluorescence for differential diagnostics of melanomas and lesions of human skin.

The usefulness of formaldehyde-induced fluorescence (FIF) for detection of melanoma cells has been suggested by several investigators during the last 40 years. FIF can be easily excited and observed in microscopic sections of formalin-fixed paraffin-embedded skin samples. However, such an approach has never been widely used in melanoma diagnostics for reasons including lack of clear diagnostic criteria, considerable inconsistencies in both the protocols used and qualitatively analysed results reported by different groups.

A role for redox factors in shaping root architecture under phosphorus deficiency.

The developmental response of the Arabidopsis root system to low phosphorus (P) availability involves the reduction in primary root elongation accompanied by the formation of numerous lateral roots. We studied the roles of selected redox metabolites, namely, radical oxygen species (ROS) and ascorbic acid (ASC) in the regulation of root system architecture by different P availability. Rapidly growing roots of plants grown on P-sufficient medium synthesize ROS in root elongation zone and quiescent centre.

Mineralocorticoid and glucocorticoid receptors in hippocampus: their impact on neurons survival and behavioral impairment after neonatal brain injury.

Glucocorticoids (GC) exert multiple effects within the central nervous system via mineralocorticoid receptors (MR) and glucocorticoid receptors (GR) activation. MR expression is associated with a neuroprotective phenotype, whereas GR activation is implicated in the induction of an endangered neural phenotype and the opposite actions are most evident in hippocampus, where these receptors are predominantly present. Hippocampus has an overall inhibitory influence on the activity of the hypothalamic-pituitary-adrenal (HPA) axis and it has been suggested that efficient learning and adequate stress response depend on the appropriate functioning of the axis brought by coordinated activation of MR and GR in this region.

Vanilloid receptors--comparison of structure and functions in mammals and invertebrates.

The vanilliod receptor subfamily belongs to the transient receptor potential family of ion channels. Vanilloid receptors are calcium-permeable channels highly expressed in many different cells, both excitable and nonexcitable, in invertebrates (nematodes, insects) and vertebrates (mammals). These receptors are sensitive to a wide range of stimuli (chemical, mechanical, osmotic and temperature) that often activate the same channel.

Cyclin-dependent kinase 2 (CDK-2) expression in nonmelanocytic human cutaneous lesions.

Lesions originating from different types of skin cells differ significantly with respect to their pathologic importance. The aim of this work was to examine as to what extent the differences in the origin are reflected in expression levels of CDK-2 and to investigate whether CDK-2 expression might be considered as potential marker useful for diagnostics and assessment of invasiveness of human nonmelanocytic lesions. We conducted comparative immunohistochemical studies of expression of cyclin-dependent kinase 2 (CDK-2) in 16 benign epithelial skin lesions, 11 precancerous lesions, 19 cases of basal cell carcinoma (first such study), 14 squamous cell carcinomas (SCCs), and 7 fibromas.

Neonatal asphyxia under hyperthermic conditions alters HPA axis function in juvenile rats.

Neonatal anoxia is an example of early-life threatening experience that might exert long-lasting behavioral disturbance. One of the consequences of neonatal asphyxia is hyperactivity in open-field test. Changes in open-field activity are coupled with changes in the function of the hypothalamic-pituitary-adrenal (HPA) axis.

snRNP: Rich Nuclear Bodies in Hyacinthus orientalis L. Microspores and Developing Pollen Cells.

The aim of the present work was the characterization of nuclear bodies in the microspore and developing pollen cells of Hyacinthus orientalis L.. The combination of Ag-NOR, immunofluorescence and immunogold techniques was used in this study.

[Jasmonate signaling pathway--new insight].

Significant progress which was made during last few years in research of jasmonic acid signaling pathway yielded surprising information about chemical form of a signaling molecule of the hormone, which turned out to be its conjugate with amino acid isoleucine. Function of jasmonic acid receptor is more and more frequently attributed to COI1 protein which is structurally and functionally similar to the auxin receptor TIR1. Signal perception takes place in the nucleus and leads to the activation of SCF(COI1) ubiquitine ligase and consequently to proteolysis of transcription repressors, the JAZ proteins.

Heterothermy in small, migrating passerine birds during stopover: use of hypothermia at rest accelerates fuel accumulation.

For small endothermic animals, heterothermy serves as an energy-saving mechanism for survival in challenging environments, but it may also accelerate fat accumulation in individuals preparing for fuel-demanding activities. This is the first study to demonstrate adaptive hypothermic responses in migrating passerines. While monitoring body temperature (T(b)) of eight blackcaps (Sylvia atricapilla) by radiotelemetry, we found that during daytime T(b)=42.

Differentiation of Staphylococcus aureus strains by CE, zeta potential and coagulase gene polymorphism.

Staphylococcus aureus is a common cause of infection in both hospitals and the community, and it is becoming increasingly virulent and resistant to antibiotics. Possibilities of fast, sensitive and cheap determination of these pathogenic bacteria are extremely important in antimicrobial therapy. In the present study, CE with chemically modified capillary and zeta potential measurements were used for differentiation of three different clinical strains of S.

Antioxidants and oxidative stress in Helix pomatia snails during estivation.

Estivation enables land snails to survive a prolonged dryness but the return to active state imposes conditions of oxidative stress on internal organs due to a transient large increase in oxygen consumption, which augments mitochondrial production of reactive oxygen species. Therefore, activities of antioxidant enzymes, concentrations of reduced glutathione (GSH) and TBARS as an index of lipid peroxidation, were evaluated in Helix pomatia snails (i) during summer activity, (ii) during estivation, which was induced experimentally, (iii) at the start of arousal from estivation, and (iv) being aroused for 24 h. Estivation induced significant decreases in activity of catalase in the kidney and hepatopancreas and glutathione peroxidase in the kidney.

Porcine skin as a model system for studies of adverse effects of narrow-band UVB pulses on human skin.

Ultraviolet (UV) radiation has been widely used in medicine, and in recent years there has been a growing interest in narrow-band UVB therapies, especially those employing pulses of the 308-nm line of XeCl excimer lasers. Comparative studies in several skin pathologies showed that narrow-band UVB was more effective than classical broad-band UVB radiation. Simultaneously, UVB is carcinogenic and there is a need for data to establish the risk associated with phototherapies involving irradiations of human skin with different doses of narrow- and broad-band UVA and/or UVB radiation.

Cyclooxygenase-2 immunohistochemistry in human melanoma: differences between results obtained with different antibodies.

Several groups have reported that cyclooxygenase-2 (COX-2) expression is significantly enhanced in human melanomas, and that the expression of this protein may be useful as diagnostic and prognostic marker for the disease. At the same time, collective analysis of immunohistochemical data on the COX-2 expression in melanomas, presented by different researchers, shows a clear lack of consistency of reported results commonly assigned to differences in protocols used for the staining. This paper describes a study involving the parallel use of three different primary anti-COX-2 antibodies targeting different COX-2 epitopes.

One hundred years of research on the natural infection of freshwater snails by trematode larvae in Europe.

Research on the infection of snails by trematodes has been conducted in Europe for over a hundred years. The initial poor knowledge of the intra-molluscan stages of these parasites together with the difficulty of classifying them constituted a serious obstacle to the undertaking of integrated parasitological and malacological efforts to gain a better understanding of the phenomenon. The compilation of morphological and anatomical results of research on trematode larvae resulted in the publication of keys to designate species of parasites, but was not sufficient to encourage malacologists to collaborate with parasitologists.

Poly(A) RNA a new component of Cajal bodies.

In European larch microsporocytes, spherical structures 0.5 to 6 microm in diameter are present in which poly(A) RNA accumulates. There were one to several bodies per cell and they were often present in the vicinity of the nucleolus.

Nucleoside diphosphate kinase isoforms regulated by phytochrome A isolated from oat coleoptiles.

Nucleoside diphosphate kinase (NDPK) (EC 2.7.4.

Effect of hyperthermia and anoxia on glucocorticoid and mineralocorticoid receptor expression in neonatal rat hippocampus.

Brief periods of neonatal asphyxia are frequently observed. Within the CNS, the hippocampus is known to be particularly vulnerable to the damaging effects of hypoxia/ischaemia. The hippocampus contains the highest concentration of both mineralocorticoid (MR) and glucocorticoid (GR) receptors and the balance between MR/GR activation influences cell birth and death.

Nuclear bodies in Douglas fir (Pseudotsuga menziesii Mirb.) microspores.

The identification of nucleolar proteins and immunocytochemical localization of small nuclear ribonucleoprotein (snRNP) elements revealed the presence of three types of nuclear bodies in Douglas fir microspore nuclei. One type consists of structures resembling Cajal bodies (CBs) and contains nucleolar proteins as well as snRNPs and U2 snRNA. The second type is bizonal bodies, which are nuclear bodies also linked with the splicing system.

Effect of light on soluble guanylyl cyclase activity in Pharbitis nil seedlings.

Cyclic GMP acts as a chemical switch in plant cells to modulate cellular reactions. However, its metabolism has not been extensively explored and is still poorly understood. Previous experiments suggest that an endogenous cGMP system could participate in the mechanism of phytochrome controlled photoperiodic flower induction in Pharbitis nil.

Combination of capillary electrophoresis, PCR and physiological assays in differentiation of clinical strains of Staphylococcus aureus.

Fast, sensitive and cheap determination of pathogenic bacteria is extremely important in many branches, for example biotechnology, quality control, analysis of samples and antimicrobial therapy. The development and application of analytical techniques in practice could provide new possibilities in this regard. The bacterial pathogen Staphylococcus aureus is responsible for a significant amount of human morbidity and mortality.