124 results match your criteria: "Institute of Environmental Microbiology[Affiliation]"

Article Synopsis
  • Thermotoga maritima, a hyperthermophilic bacterium, has an unusual peptidoglycan structure featuring d-lysine, but lacks specific enzymes for the biosynthesis of d-alanine and d-glutamate, making their pathways unclear.
  • Researchers identified a new enzyme, TM0831, which acts as a d-amino acid aminotransferase, showing high activity for various d-amino acids and racemase activity towards some, including aspartate and glutamate.
  • The study demonstrated that engineering a mutant strain of Thermus thermophilus to include TM0831 significantly improved growth, indicating that TM0831 plays a crucial role in the production of d-glutamate in T
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The PI3K/AKT Pathway and Gene Are Involved in "Tree-Top Disease" of .

Genes (Basel)

January 2022

State Key Laboratory of Crop Stress Biology for Arid Areas, College of Plant Protection, Northwest A&F University, Yangling 712100, China.

Nucleopolyhedrovirus (NPV) can alter its host behaviour such that infected larvae hang at the top of trees before their death. This phenomenon was firstly described by Hofmann in 1891 and named as "tree-top disease". Subsequent studies have described effects during the infection proceedings as NPVs manipulate the host to avoid the immune response, cross defensive barriers and regulate hormones.

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Sulfur fertilization integrated with soil redox conditions reduces Cd accumulation in rice through microbial induced Cd immobilization.

Sci Total Environ

June 2022

Key Laboratory of Agro-ecological Processes in Subtropical Region, Institute of Subtropical Agriculture, Chinese Academy of Sciences, Changsha 410125, China. Electronic address:

Sulfate and water management can be respectively applied to control Cd accumulation in rice, but the interaction mechanisms remain unclear. Three water management coupled with five sulfate application concentrations were employed to investigate rice Cd uptake. Results showed there was a significant interaction between sulfate application and soil redox state, and the highest sulfate treatments reduced rice grain Cd by 63.

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Au(III)-induced extracellular electron transfer by Burkholderia contaminans ZCC for the bio-recovery of gold nanoparticles.

Environ Res

July 2022

Institute of Environmental Microbiology, College of Resources and Environment, Fujian Agriculture and Forestry University, Fuzhou, 350002, PR China. Electronic address:

The biorecovery of gold (Au) by microbial reduction has received increasing attention, however, the biomolecules involved and the mechanisms by which they operate to produce Au nanoparticles have been not resolved. Here we report that Burkholderia contaminans ZCC is capable of reduction of Au(III) to Au nanoparticles on the cell surface. Exposure of B.

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Article Synopsis
  • The study focused on identifying genes linked to plant growth promotion and cadmium tolerance in three specific bacteria strains associated with the grass Pennisetum giganteum.
  • Researchers evaluated the bacteria's abilities to promote plant growth through various tests, including enzyme production and nutrient solubilization.
  • A biosafety assessment showed that the bacteria strains were non-toxic to mice, making them safe options for use in biofertilizers and environmental remediation.
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Selenium (Se) can be used to counteract cadmium (Cd) toxicity in plants. However, mechanisms underlying the alleviation of Cd toxicity by Se have not been completely elucidated, especially those by which Se reduces Cd translocation. A hydroponic experiment was performed to illustrate the regulatory mechanisms of Cd transport by selenate (Se (VI)) in pakchoi (Brassica rapa L.

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Genome-Resolved Metagenomics Reveals Distinct Phosphorus Acquisition Strategies between Soil Microbiomes.

mSystems

February 2022

College of Resources and Environmental Sciences, National Academy of Agriculture Green Development, Key Laboratory of Plant-Soil Interactions, Ministry of Education, China Agricultural Universitygrid.22935.3f, Beijing, China.

Article Synopsis
  • Enhancing soil phosphate solubilization is crucial for sustainable agriculture, but the understanding of how microorganisms adjust to different phosphorus levels is limited.
  • The study used genome-resolved metagenomics and amplicon sequencing to explore microbial mechanisms involved in phosphorus cycling across various agricultural and reforestation settings.
  • Findings highlighted that different microbial strategies for phosphorus acquisition exist between agricultural and reforestation soils, indicating potential methods for improving crop nutrient uptake and overall productivity.
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Associations between carabid beetles and fungi in the light of 200 years of published literature.

Sci Data

November 2021

State Key Laboratory of Ecological Pest Control for Fujian and Taiwan Crops, Institute of Applied Ecology, Fujian Agriculture and Forestry University, Fuzhou, 350002, China.

Describing and conserving ecological interactions woven into ecosystems is one of the great challenges of the 21 century. Here, we present a unique dataset compiling the biotic interactions between two ecologically and economically important taxa: ground beetles (Coleoptera: Carabidae) and fungi. The resulting dataset contains the carabid-fungus associations collected from 392 scientific publications, 129 countries, mostly from the Palearctic region, published over a period of 200 years.

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Strains of the genus Mucilaginibacter, belonging to the phylum Bacteroidetes, have been noted for exhibiting high genome plasticity and for the vigorous production of extracellular polymeric substances (EPS). Here we analyzed the composition and properties of EPS generated by M. rubeus P2, isolated from a gold-copper mine and exhibiting extremely high resistance to multiple heavy metals.

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Coordination of root auxin with the fungus Piriformospora indica and bacterium Bacillus cereus enhances rice rhizosheath formation under soil drying.

ISME J

March 2022

Center for Plant Water-use and Nutrition Regulation and College of Life Sciences, Joint International Research Laboratory of Water and Nutrient in Crop, Fujian Agriculture and Forestry University, Fuzhou, 350002, China.

Moderate soil drying (MSD) is a promising agricultural technique that can reduce water consumption and enhance rhizosheath formation promoting drought resistance in plants. The endophytic fungus Piriformospora indica (P. indica) with high auxin production may be beneficial for rhizosheath formation.

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Identification of a MarR Subfamily That Regulates Arsenic Resistance Genes.

Appl Environ Microbiol

November 2021

Institute of Environmental Microbiology, College of Resources and Environment, Fujian Agriculture and Forestry Universitygrid.256111.0, Fuzhou, Fujian, China.

In this study, comprehensive analyses were performed to determine the function of an atypical MarR homolog in sp. strain As-55. Genomic analyses of sp.

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Antibiotic-resistant pathogens constitute an escalating public health concern. Hence a better understanding of the underlying processes responsible for this expansion is urgently needed. Co-selection of heavy metal/biocide and antibiotic resistance genes (ARGs) has been suggested as one potential mechanism promoting the proliferation of antimicrobial resistance (AMR).

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Antimicrobial Activity of Metals and Metalloids.

Annu Rev Microbiol

October 2021

Institute of Environmental Microbiology, College of Resources and Environment, Fujian Agriculture and Forestry University, Fuzhou 350002, China; email:

Competition shapes evolution. Toxic metals and metalloids have exerted selective pressure on life since the rise of the first organisms on the Earth, which has led to the evolution and acquisition of resistance mechanisms against them, as well as mechanisms to weaponize them. Microorganisms exploit antimicrobial metals and metalloids to gain competitive advantage over other members of microbial communities.

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Microbial reduction and resistance to selenium: Mechanisms, applications and prospects.

J Hazard Mater

January 2022

State Key Laboratory of Agricultural Microbiology, College of Life Science and Technology, Huazhong Agricultural University, Wuhan 430070, PR China. Electronic address:

Selenium is an essential trace element for humans, animals and microorganisms. Microbial transformations, in particular, selenium dissimilatory reduction and bioremediation applications have received increasing attention in recent years. This review focuses on multiple Se-reducing pathways under anaerobic and aerobic conditions, and the phylogenetic clustering of selenium reducing enzymes that are involved in these processes.

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Metagenomic insights into nitrogen and phosphorus cycling at the soil aggregate scale driven by organic material amendments.

Sci Total Environ

September 2021

College of Resources and Environmental Sciences, National Academy of Agriculture Green Development, Key Laboratory of Plant-Soil Interactions, Ministry of Education, China Agricultural University, Beijing 100193, China. Electronic address:

The soil microbiome, existing as interconnected communities closely associated with soil aggregates, is the key driver in nutrient cycling. However, the underlying genomic information encoding the machinery of the soil microbiome involved in nutrient cycling at the soil aggregate scale is barely known. Here comparative metagenomics and genome binning were applied to investigate microbial functional profiles at the soil aggregate scale under different organic material amendments in a long-term field experiment.

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We isolated strains HB5002 and HB5008 from Mine Hot Spring in Japan. Whole-genome sequencing revealed that they showed ∼100% average nucleotide identity to each other, ≥98.53% to the strains originating from the same spot but ≤97.

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We isolated strain HB5018 from Mine Hot Spring in Japan, where the type strain HB8 was isolated nearly half a century ago. The complete genome sequence of HB5018 showed 99.1% average nucleotide identity with HB8, suggesting strict species conservation in the habitat over the past 50 years.

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Anthropogenic activities such as mining, industrialization and subsequent emission of industrial waste, and agricultural practices have led to an increase in the accumulation of metal(loid)s in agricultural soils and crops, which threatens the health of people; the risk is more pronounced for individuals whose survival depends on food sources from several contaminated regions. Selenium (Se) is an element essential for the normal functioning of the human body and is a beneficial element for plants. Se deficiency in the diet is a common issue in many countries around the world, such as China and Egypt.

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Recent advances in exploring the heavy metal(loid) resistant microbiome.

Comput Struct Biotechnol J

December 2020

State Key Laboratory of Agricultural Microbiology, Huazhong Agricultural University, Wuhan 430070, China.

Heavy metal(loid)s exert selective pressure on microbial communities and evolution of metal resistance determinants. Despite increasing knowledge concerning the impact of metal pollution on microbial community and ecological function, it is still a challenge to identify a consistent pattern of microbial community composition along gradients of elevated metal(loid)s in natural environments. Further, our current knowledge of the microbial metal resistome at the community level has been lagging behind compared to the state-of-the-art genetic profiling of bacterial metal resistance mechanisms in a pure culture system.

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Co-selection of antibiotic resistance genes, and mobile genetic elements in the presence of heavy metals in poultry farm environments.

Sci Total Environ

February 2021

Institute of Environmental Microbiology, College of Agricultural Resources and Environment, Fujian Agriculture and Forestry University, Fuzhou, China; Key Lab of Urban Environment and Health, Institute of Urban Environment, Chinese Academy of Sciences, 1799 Jimei Road, 361021 Xiamen, China; Fujian Provincial Key Laboratory of Soil and Environmental Health and Regulation, College of Resources and Environment, Fujian Agriculture and Forestry University, Fuzhou, China. Electronic address:

Environmental selection of antibiotic resistance genes (ARGs) is considered to be caused by antibiotic or metal residues, frequently used in livestock. In this study we examined three commercial poultry farms to correlate the co-occurrence patterns of antibiotic and metal residues to the presence of ARGs. We quantified 283 ARGs, 12 mobile genetic elements (MGEs), 49 targeted antibiotics, 7 heavy metals and sequenced 16S rRNA genes.

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Improved grain yield and lowered arsenic accumulation in rice plants by inoculation with arsenite-oxidizing Achromobacter xylosoxidans GD03.

Ecotoxicol Environ Saf

December 2020

Fujian Provincial Key Laboratory of Agroecological Processing and Safety Monitoring, College of Life Sciences, Fujian Agriculture and Forestry University, Fuzhou, Fujian, 350002, China. Electronic address:

Arsenite is the predominant arsenic species in flooded paddy soil, and arsenite bioaccumulation in rice grains has been identified as a major problem in many Asian countries. Lowering arsenite level in rice plants and grain via accelerating arsenite oxidation is a potential strategy to help populations, who depended on rice consumption, to reduce the internal exposure level of arsenic. We herein isolated a strain, Achromobacter xylosoxidans GD03, with the high arsenite-oxidizing ability and plant growth-promoting traits.

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We developed micro-liquid enclosure arrays (MLEAs) for holding solution samples in coherent diffractive imaging (CDI) using x-ray free-electron lasers (XFELs). Hundreds of fully isolated micro-liquid enclosures are arranged in a single MLEA chip for efficient measurement, where each enclosure is destroyed after exposure to a single XFEL pulse. A semi-automated MLEA assembling system was also developed to enclose solution samples into MLEAs efficiently at high precision.

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Article Synopsis
  • * Recent research has focused on understanding the extent of Sb pollution, its behavior in soils, and how soil properties and organisms affect Sb availability and uptake by plants.
  • * The review emphasizes the mechanisms of Sb uptake in plants, including its pathways, translocation from roots to shoots, and the resulting toxicity impacts on vegetation.
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Underlying mechanisms responsible for restriction of uptake and translocation of heavy metals (metalloids) by selenium via root application in plants.

J Hazard Mater

January 2021

Rural Energy and Environment Agency, Ministry of Agriculture and Rural Affairs, Beijing, 100125, China. Electronic address:

Since selenium (Se) was shown to be an essential element for humans in 1957, the biofortification of Se to crops via foliar spraying or soil fertilization has been performed for several decades to satisfy the daily nutritional need of humans. Appropriate doses of Se were found to counteract a number of abiotic and biotic stresses, such as exposure to heavy metals (metalloids) (HMs), via influencing the regulation of antioxidant systems, by stimulation of photosynthesis, by repair of damaged cell structures and functions, by regulating the metabolism of some substances and the rebalancing of essential elements in plant tissues. However, few concerns were paid on why and how Se could reduce the uptake of a variety of HMs.

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