Identification of superior haplotypes and candidate gene for seed size-related traits in soybean ( L.).

Unlabelled: Seed size is an economically important trait that directly determines the seed yield in soybean. In the current investigation, we used an integrated strategy of linkage mapping, association mapping, haplotype analysis and candidate gene analysis to determine the genetic makeup of four seed size-related traits viz., 100-seed weight (HSW), seed area (SA), seed length (SL), and seed width (SW) in soybean.

Aquaculture source of atmospheric NO in China: Comparison of system types, management practices and measurement methods.

Aquaculture systems contribute to atmospheric NO, but the magnitude of this NO source is largely uncertain. Here, we synthesized data from 139 aquaculture sites based on 59 peer-reviewed publications, and estimated that China's aquaculture systems emitted 9.68 Gg N yr (4.

Investigation of tritium content in wild plants growing in an area with an underground source of tritium.

Within the framework of the presented work, the results of large-scale studies of the content of TFWT in wild plants growing in an area with an underground source of tritium are presented. Various types of plants were studied: herbaceous, shrubby, woody. The concentration of TFWT in various vegetative organs of the same plants was analyzed separately.

Effects of Yersinia pseudotuberculosis outer membrane vesicles on Pseudomonas aeruginosa antigens immune response.

Outer membrane vesicles (OMVs) are immunogenic self-adjuvanting vesicles produced by Gram-negative bacteria such as Pseudomonas aeruginosa and Yersinia pseudotuberculosis. While the effects of OMVs on different antigens immune stimulation are not clear. In this study, we constructed recombinant Yersinia pseudotuberculosis ΔlpxL strain,with pBlue-PcrV and pBlue-OprF/I, and then purified ΔlpxL rOMVPcrV (rOMVyp2P)and ΔlpxL rOMVOprF/I (rOMVyp2F) and analyzed its effect on immune response and protection against Pseudomonas aeruginosa PAO1 infection.

Enhancing D-lactic acid production from non-detoxified corn stover hydrolysate via innovative F127-IEA hydrogel-mediated immobilization of T15.

Background: The production of D-lactic acid (D-LA) from non-detoxified corn stover hydrolysate is hindered by substrate-mediated inhibition and low cell utilization times. In this study, we developed a novel temperature-sensitive hydrogel, F127-IEA, for efficient D-LA production using a cell-recycle batch fermentation process.

Results: F127-IEA exhibited a porous structure with an average pore size of approximately 1 μm, facilitating the formation of stable clusters within the gel matrix.

Microbiome selection and evolution within wild and domesticated plants.

Microbes are ubiquitously found across plant surfaces and even within their cells, forming the plant microbiome. Many of these microbes contribute to the functioning of the host and consequently affect its fitness. Therefore, in many contexts, including microbiome effects enables a better understanding of the phenotype of the plant rather than considering the genome alone.

Methane production related to microbiota in dairy cattle feces.

Methane (CH) emission from livestock feces, led by ruminants, shows a profound impact on global warming. Despite this, we have almost no information on the syntrophy of the intact microbiome metabolisms, from carbohydrates to the one-carbon units, covering multiple stages of ruminant development. In this study, syntrophic effects of polysaccharide degradation and acetate-producing bacteria, and methanogenic archaea were revealed through metagenome-assembled genomes from water saturated dairy cattle feces.

Biogeographic patterns of viral communities, ARG profiles and virus-ARG associations in adjacent paddy and upland soils across black soil region.

Biogeographic distribution of prokaryotic and eukaryotic communities has been extensively studied. Yet, our knowledge of viral biogeographic patterns, the corresponding driving factors and the virus-resistome associations is still limited. Here, using metagenomic analysis, we explored the viral communities and profiles of antibiotic resistance genes (ARGs) in 30 fields of paddy (rice soils, RS) and upland soils (corn soils, CS) at a regional scale across black soil region of Northeast China.

Corrigendum: Effects of different sowing dates on biomass allocation of various organs and allometric growth of .

[This corrects the article DOI: 10.3389/fpls.2024.

Chromosome-scale genome assembly and gene annotation of the Alligator Gar (Atractosteus spatula).

Given the aggressive nature and robust survival capabilities of the alligator gar (Atractosteus spatula), if it was to exist in a new environment as an invasive species, it could cause significant disruption to the invaded ecosystem. Building on the continuity and completeness of the existing draft genome were not optimal, this study has updated a high-quality genome of the alligator gar at the chromosome level, which was assembled using Oxford Nanopore Technology and chromatin interaction mapping (Hi-C) sequencing techniques. In summary, the alligator gar genome in this study was 1.

"Sadness smile" curve: Processing emotional information from social network for evaluating thermal comfort perception.

Thermal comfort is a subjective perception, hence conventional evaluation using meteorological factors faces a technical challenge in precise assessment. Human beings have the nature to differentiate expressions of facial emotions when varied thermal environments are perceived. Facial expression scores can be taken as a predictor of perceived thermal comfort which can be precisely assessed using deep learning against physical factors.

Identification of Cherry Tomato Volatiles Using Different Electron Ionization Energy Levels.

A comprehensive analysis of the volatile components of 11 different cherry tomato pastes (Tesco Extra, Orange, Zebra, Yellow, Round Netherland, Mini San Marzano, Spar truss, Tesco Sunstream, Paprikakertész, Mc Dreamy, and Tesco Eat Fresh) commercially available in Hungary was performed. In order to ensure the reliability and accuracy of the measurement, the optimal measurement conditions were first determined. SPME (solid-phase microextraction) fiber coating, cherry tomato paste treatment, and SPME sampling time and temperature were optimized.

Synergistic Effect of Biochar, Phosphate Fertilizer, and Phosphorous Solubilizing Bacteria for Mitigating Cadmium (Cd) Stress and Improving Maize Growth in Cd-Contaminated Soil.

Cadmium (Cd) contamination threatens human health and plant growth due to its accumulation in edible parts. The sole application of phosphorus-solubilizing bacteria (PSB), biochar (BC), and phosphorus (P) effectively mitigates Cd's adverse effects in contaminated agricultural systems. However, further investigation into their combined impacts on Cd toxicity and maize () production is essential.

The Effects of , , a Lignocellulolytic Enzyme System, and Their Combination on the Fermentation Profiles, Chemical Composition, Bacterial Community, and In Situ Rumen Digestion of Fresh Waxy Corn Stalk Silage.

The objective of this study was to assess the impact of , , and a lignocellulolytic enzyme system on the nutritional value, fermentation profiles, rumen digestion, and bacterial community of fresh waxy corn stalk silage. Fresh waxy corn stalks harvested after 90 days of growth were treated with no additives (CON), compound multiple lactobacilli (ML, comprising at 1.0 × 10 cfu/g fresh weight and at 1.

Fire Reduces Soil Nitrate Retention While Increasing Soil Nitrogen Production and Loss Globally.

Elucidating the response of soil gross nitrogen (N) transformations to fires could improve our understanding of how fire affects N availability and loss. Yet, how internal soil gross N transformation rates respond to fires remains unexplored globally. Here, we investigate the general response of gross soil N transformations to fire and its consequences for N availability and loss.

Toward systems agroecology: Design and control of intercropping.

In view of changing climatic conditions and disappearing natural resources such as fertile soil and water, exploring alternatives to today's industrial monocrop farming becomes essential. One promising farming practice is intercropping (IC), in which two or more crop species are grown together. Many experiments have shown that, under certain circumstances, IC can decrease soil erosion and fertilizer use, improve soil health and land management, while preserving crop production levels.

The endangered common hamster needs proteins: identifying diversified crop-based diets improving hibernation and reproductive success.

Modern production-oriented farming has led to a decline in agricultural biodiversity. In Europe, one example of concern is the common hamster , a hibernating rodent once largely distributed in farmlands and now listed as Critically Endangered. The decline of this species is tied to a significant decrease in hamsters' body mass at emergence from hibernation and in reproduction rate.

Konjac glucomannan and κ-carrageenan improve hepatic fatty acid metabolism and colonic microbiota in suckling piglet.

Konjac glucomannan (KGM) and κ-carrageenan are polysaccharides that have garnered attention for their potential health benefits. This study aimed to evaluate the maternal supplementation of KGM and κ-carrageenan (SF) during later gestation and lactation on the effect of hepatic lipid metabolism and colonic microflora in offspring. Regarding antioxidant and inflammatory factors in the suckling piglet liver, our results showed that nuclear factor erythroid 2-related factor 2 (Nrf2) and interleukin (IL)-10 levels were significantly increased in the SF group (P < 0.

From data to insights: Upscaling riverine GHG fluxes in Germany with machine learning.

Global fluvial ecosystems are important sources of greenhouse gases (CO, CH and NO) to the atmosphere, but their estimates are plagued by uncertainties due to unaccounted spatio-temporal variabilities in the fluxes. In this study, we tested the potential of modeling these variabilities using several machine learning models (ML) and three different input datasets (remotely sensed vegetation indices, in-situ water quality, and a combination of both) from 20 headwater catchments in Germany that differ in catchment land use and stream size. We also upscaled fluvial GHG fluxes for Germany using the best ML model and explored the role of catchment land use on the GHG spatial-temporal trends.

Microbiota-induced asymmetry in coastal methane emission potential under experimental precipitation gradients.

Climate models predict that the frequency and intensity of extreme precipitation events will increase globally. Despite carbon budget in coastal wetlands is known to be sensitive to precipitation variability, in where CH productions and potential mechanisms remain poorly understood. We investigated CH emission potential and its drivers after 7-year of field experiments with five precipitation gradients (-60%, -40%, ambient condition, +40%, +60%) in Yellow River Delta, China.

Microbes drive more carbon dioxide and nitrous oxide emissions from wetland under long-term nitrogen enrichment.

Wetlands are frequently regarded as weak carbon dioxide (CO) sinks, the largest natural sources of methane (CH), and weak sources of nitrous oxide (NO). Anthropogenic activities and climate change-induced nitrogen (N) enrichment may affect wetland carbon (C) and N cycling via soil microbes, consequently modifying the original greenhouse gas (GHG) emissions. However, the effects and mechanisms of the duration and rate of N inputs on wetland GHG emissions remain uncertain and controversial.

Dominant Edaphic Controls on Particulate Organic Carbon in Global Soils.

The current soil carbon paradigm puts particulate organic carbon (POC) as one of the major components of soil organic carbon worldwide, highlighting its pivotal role in carbon mitigation. In this study, we compiled a global dataset of 3418 data points of POC concentration in soils and applied empirical modeling and machine learning algorithms to investigate the spatial variation in POC concentration and its controls. The global POC concentration in topsoil (0-30 cm) is estimated as 3.