Structural and functional consequences of the H180A mutation of the light-driven sodium pump KR2.

Krokinobacter eikastus rhodopsin 2 (KR2) is a light-driven pentameric sodium pump. Its ability to translocate cations other than protons and to create an electrochemical potential makes it an attractive optogenetic tool. Tailoring its ion-pumping characteristics by mutations is therefore of great interest.

Toward Detecting Biosignatures of DNA, Lipids, and Metabolic Intermediates from Bacteria in Ice Grains Emitted by Enceladus and Europa.

The reliable identification of biosignatures is key to the search for life elsewhere. On ocean worlds like Enceladus or Europa, this can be achieved by impact ionization mass spectrometers, such as the SUrface Dust Analyzer (SUDA) on board NASA's upcoming Europa Clipper mission. During spacecraft flybys, these instruments can sample ice grains formed from subsurface water and emitted by these moons.

Threshold photoelectron spectroscopy of trimethylborane and its pyrolysis products.

Trimethylborane (TMB) and its chemistry upon pyrolysis have been investigated by threshold photoelectron spectroscopy. TMB shows an unstructured spectrum and its adiabatic ionization energy (IE) has been determined to be 9.93 ± 0.

Arene Variation of Highly Cytotoxic Tridentate Naphthoquinone-Based Ruthenium(II) Complexes and In-Depth In Vitro Studies.

The main purpose of this study was to synthesize a new set of naphthoquinone-based ruthenium(II) arene complexes and to develop an understanding of their mode of action. This study systematically reviews the steps of synthesis, aiming to provide a simplified approach using microwave irradiation. The chemical structures and the physicochemical properties of this novel group of compounds were examined by H-NMR and C-NMR spectroscopy, X-ray diffractometry, HPLC-MS and supporting DFT calculations.

Curvature model for nanoparticle size effects on peptide fibril stability and molecular dynamics simulation data.

Nanostructured surfaces are widespread in nature and are being further developed in materials science. This makes them highly relevant for biomolecules, such as peptides. In this data article, we present a curvature model and molecular dynamics (MD) simulation data on the influence of nanoparticle size on the stability of amyloid peptide fibrils related to our research article entitled "Mechanistic insights into the size-dependent effects of nanoparticles on inhibiting and accelerating amyloid fibril formation" (John et al.

Reliable prediction of association (free) energies of supramolecular complexes with heavy main group elements - the HS13L benchmark set.

We introduce a set of 13 supramolecular complexes featuring diverse non-covalent interactions with heavy main group elements (Zn, As, Se, Te, Br, I), high charges (-2 up to +4), and large systems with up to 266 atoms (HS13L). The experimental Gibbs free energies of association cover the typical range (-1.9 to -9.

An efficient implementation of the GOSTSHYP pressure model by applying shell-bounding Gaussian 1-electron-3-center integral screening.

We implemented a screening algorithm for one-electron-three-center overlap integrals over contracted Gaussian-type orbitals into the Q-Chem program package. The respective bounds were derived using shell-bounding Gaussians and the Obara-Saika recurrence relations. Using integral screening, we reduced the computational scaling of the Gaussians On Surface Tesserae Simulate HYdrostatic Pressure (GOSTSHYP) model in terms of calculation time and memory usage to a linear relationship with the tesserae used to discretize the surface area.

A rigid redox-active-ligand-supported bis(germylene) as a two-centre six-electron donor.

A naphthyridine diimine (NDI) supported bis(germylene) NDI-Ge containing two dicoordinate, coplanar Ge(II) atoms has been synthesised. Computational investigations on NDI-Ge indicated the two Ge(II) atoms are nearly independent. The EDA-NOCV analysis of the [NDI-Ge][Fe(CO)] complex revealed the six-electron donor behavior of NDI-Ge, the first example for group-14-element-based bidentate ligands.

Calculation of Mass Spectra with the QCxMS Method for Negatively and Multiply Charged Molecules.

Analysis and validation of a mass spectrometry (MS) experiment are usually performed by comparison to reference spectra. However, if references are missing, measured spectra cannot be properly matched. To close this gap, the Quantum Chemical Mass Spectrometry (QCxMS) program has been developed.

Substrate effects on the speed limiting factor of WSe photodetectors.

We investigate the time-resolved photoelectric response of WSe crystals on glass and flexible polyimide substrates to determine the effect of a changed dielectric environment on the speed of the photodetectors. We show that varying the substrate material can alter the speed-limiting mechanism: while the detectors on polyimide are limited, those on glass are limited by slower excitonic diffusion processes. We attribute this to a shortening of the depletion layer at the metal electrode/WSe interface caused by the higher dielectric screening of glass compared to polyimide.

Quantum chemical calculation of the vapor pressure of volatile and semi volatile organic compounds.

The vapor pressure is a specific and temperature-dependent parameter that describes the volatility of a substance and thus its driving force for evaporation or sublimation into the gas phase. Depending on the magnitude of the vapor pressure, there are different methods for experimental determination. However, these are usually associated with a corresponding amount of effort and become less accurate as the vapor pressure decreases.

Synthesis of Turbostratic Boron Nitride: Effect of Urea Decomposition.

Since the recent discovery of the template-free synthesis of porous boron nitride, research on the synthesis and application of the material has steadily increased. Nevertheless, the formation mechanism of boron nitride is not yet fully understood. Especially for the complex precursor decomposition of urea-based turbostratic boron nitride (t-BN), a profound understanding is still lacking.

Alliacane-Type Secondary Metabolites from Submerged Cultures of the Basidiomycete .

Seven sesquiterpenoids, named nebucanes A-G (-), featuring a rare alliacane scaffold with unprecedented furan or pyrrole functions, were isolated from the fermentation broth of . Their structures were established on the basis of 1D/2D NMR spectroscopic analyses, HR-(+)-ESIMS spectra, and comparison of measured and calculated CD spectra for determination of the absolute configuration. Assessing the biological activities, nebucane D () exhibited antifungal effects against , while nebucane G () displayed significant cytotoxicity against MCF-7 and A431 cell lines.

Accurate property prediction by second order perturbation theory: The REMP and OO-REMP hybrids.

The prediction of molecular properties such as equilibrium structures or vibrational wavenumbers is a routine task in computational chemistry. If very high accuracy is required, however, the use of computationally demanding ab initio wavefunction methods is mandatory. We present property calculations utilizing Retaining the Excitation Degree - Møller-Plesset (REMP) and Orbital Optimized REMP (OO-REMP) hybrid perturbation theories, showing that with the latter approach, very accurate results are obtained at second order in perturbation theory.

Quantum dynamical study of inter-chain exciton transport in a regioregular P3HT model system at finite temperature: HJ vs H-aggregate models.

We report on quantum dynamical simulations of inter-chain exciton transport in a model of regioregular poly(3-hexylthiophene), rr-P3HT, at finite temperature using the Multi-Layer Multi-Configuration Time-Dependent Hartree method for a system of up to 63 electronic states and 180 vibrational modes. A Frenkel Hamiltonian of HJ aggregate type is used along with a reduced H-aggregate representation; electron-phonon coupling includes local high-frequency modes as well as anharmonic intermolecular modes. The latter are operative in mediating inter-chain transport by a mechanism of transient localization type.

Structure and bonding of proximity-enforced main-group dimers stabilized by a rigid naphthyridine diimine ligand.

The development of ligands capable of effectively stabilizing highly reactive main-group species has led to the experimental realization of a variety of systems with fascinating properties. In this work, we computationally investigate the electronic, structural, energetic, and bonding features of proximity-enforced group 13-15 homodimers stabilized by a rigid expanded pincer ligand based on the 1,8-naphthyridine (napy) core. We show that the redox-active naphthyridine diimine (NDI) ligand enables a wide variety of structural motifs and element-element interaction modes, the latter ranging from isolated, element-centered lone pairs (e.

Electronic spectroscopy of phthalocyanine in a supersonic jet revisited.

Spectroscopic investigation of phthalocyanine in the gas phase has tremendously profited from molecular beam spectroscopy. Isentropic expansion succeeds in reducing the population of rovibrational states to the vibrational ground state so that only low energy rotational states remain populated. However, with respect to UV-vis spectroscopy the pioneers of molecular beam spectroscopy came to the discouraging conclusion that the information contained in the rotational structure of a large molecule is minimal, and even if the rotational structure could be resolved with great effort, the results are unlikely to be worth the difficulty [Levy, , 1980, 197-225].

Can a Finite Chain of Hydrogen Cyanide Molecules Model a Crystal?

When calculating structural or spectroscopic properties of molecular crystals, the question arises whether it is sufficient to simulate only a single molecule or a small molecular cluster or whether the simulation of the entire crystal is indispensable. In this work we juxtapose calculations on the high-pressure structural properties of the (periodic) HCN crystal and chains of HCN molecules of finite length. We find that, in most cases, the behavior of the crystal can be reproduced by computational methods simulating only around 15 molecules.

Spin-Labeled Riboswitch Synthesized from a Protected TPA Phosphoramidite Building Block.

The nitroxide TPA (2,2,5,5-tetramethyl-pyrrolin-1-oxyl-3-acetylene) is an excellent spin label for EPR studies of RNA. Previous synthetic methods, however, are complicated and require special equipment. Herein, we describe a uridine derived phosphoramidite with a photocaged TPA unit attached.

Assessing Antigen Presentation on the Surface of Plasmodium falciparum-Infected Erythrocytes by Photoactivated Localization Microscopy (PALM).

Super-resolution microscopy in the form of photoactivated localization microscopy (PALM) offers the possibility of counting single molecules in a cell, a cellular compartment or a molecular complex. PALM can, therefore, underpin molecular and biochemical processes with a numeric and stoichiometric understanding of the interacting players. Here, we introduce the physical principles underlying PALM and provide a step-by-step protocol of how to apply PALM to questions related to the biology and pathophysiology of P.

Carboranyl Analogues of Mefenamic Acid and Their Biological Evaluation.

Mefenamic acid represents a widely used nonsteroidal anti-inflammatory drug (NSAID) to treat the pain of postoperative surgery and heavy menstrual bleeding. Like other NSAIDs, mefenamic acid inhibits the synthesis of prostaglandins by nonselectively blocking cyclooxygenase (COX) isoforms COX-1 and COX-2. For the improved selectivity of the drug and, therefore, reduced related side effects, the carborane analogues of mefenamic acid were evaluated.

Rhombohedral Phase Formation in Yttria-Stabilized Zirconia Induced by Dental Technical Tools and Its Impact on Dental Applications.

In the study the influence of different dental technical tools on the surface temperature and phase composition of fixed dental prostheses (FDPs) made of yttria-partially stabilized zirconia polycrystals (3Y-/4Y-/5Y-PSZ) was investigated. FDPs were fabricated by using computer-aided manufacturing (CAM). The FDPs were treated with a contra-angle handpiece equipped with different burs and polishers.

Uncertainty quantification of phase transition quantities from cluster weighting calculations.

In this work, we investigate how uncertainties in experimental input data influence the results of quantum cluster equilibrium calculations. In particular, we focus on the calculation of vaporization enthalpies and entropies of seven organic liquids, compare two computational approaches for their calculation, and investigate how these properties are affected by changes in the experimental input data. It is observed that the vaporization enthalpies and entropies show a smooth dependence on changes in the reference density and boiling point.

Exploiting Phase Transitions in Catalysis: Adsorption of CO on doped VO -Polymorphs.

VO is well known for its low-temperature metal-insulator transition between two phases with tetragonal rutile and monoclinic structure. The adsorption of CO on the two polymorphs of Mo-doped VO is calculated to investigate the effect of a substrate phase change on the adsorption energy. The system is investigated theoretically at density-functional theory level using a hybrid functional with London dispersion correction.

Can a Wanzlick-like equilibrium exist between dicoordinate borylenes and diborenes?

Boron chemistry has experienced tremendous progress in the last few decades, resulting in the isolation of a variety of compounds with remarkable electronic structures and properties. Some examples are the singly Lewis-base-stabilised borylenes, wherein boron has a formal oxidation state of +I, and their dimers featuring a boron-boron double bond, namely diborenes. However, no evidence of a Wanzlick-type equilibrium between borylenes and diborenes, which would open a valuable route to the latter compounds, has been found.