2,222 results match your criteria: "Institute for Molecules and Materials[Affiliation]"

Survival of periodontal ligament myofibroblasts after short-term mechanical strain in rats and in vitro: Could myofibroblasts contribute to orthodontic relapse?

Arch Oral Biol

January 2025

Department of Dentistry-Orthodontics and Craniofacial Biology, Research Institute for Medical Innovation, Radboud university medical center, Philips van Leydenlaan 25, Nijmegen 6525 EX, the Netherlands. Electronic address:

Objectives: To investigate in vivo whether myofibroblasts formed in the PDL after exposure to short-term high experimental orthodontic forces in rats survive. To study in vitro whether human PDL fibroblasts can differentiate into myofibroblasts and survive when chemical or mechanical stimuli are removed.

Design: Nine 6-week-old male Wistar rats were used in this experiment.

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Lactide, possessing two stereocenters and thus three distinct configurations (DD, DL, and LL), serves as a captivating building block for polymers and self-assembly. Notably, polylactide (PLA) exhibits stereocomplexation, displaying heightened interactions between different configurations compared with interactions within the same configuration. This characteristic renders PLA an intriguing subject for investigating self-assembly behavior.

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Resonant pumping of the electronic f-f transitions in the orbital multiplet of dysprosium ions (Dy^{3+}) in a complex perovskite DyFeO_{3} is shown to impulsively launch THz lattice dynamics corresponding to the B_{2g} phonon mode, which is dominanted by the motion of Dy^{3+} ions. The findings, supported by symmetry analysis and density-functional theory calculations, not only provide a novel route for highly selective excitation of the rare-earth crystal lattices but also establish important relationships between the symmetry of the electronic and lattice excitations in complex oxides.

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Mechanism of C-3 Acyl Neighboring Group Participation in Mannuronic Acid Glycosyl Donors.

J Am Chem Soc

January 2025

Department of Synthetic Organic Chemistry, Institute for Molecules and Materials, Radboud University, Heyendaalseweg 135, Nijmegen 6525 AJ, The Netherlands.

One of the main challenges in oligosaccharide synthesis is the stereoselective introduction of the glycosidic bond. In order to understand and control glycosylation reactions, thorough mechanistic studies are required. Reaction intermediates found by NMR spectroscopy often cannot explain the glycosylation's stereochemical outcome.

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Spectroscopy and Excited-State Dynamics of Methyl Ferulate in Molecular Beams.

J Phys Chem A

January 2025

Van't Hoff Institute for Molecular Sciences, University of Amsterdam, Science Park 904, Amsterdam 1098 XH, the Netherlands.

The spectroscopic and dynamic properties of methyl ferulate─a naturally occurring ultraviolet-protecting filter─and microsolvated methyl ferulate have been studied under molecular beam conditions using resonance-enhanced multiphoton ionization spectroscopy in combination with quantum chemical calculations. We demonstrate and rationalize how the phenyl substitution pattern affects the state ordering of the lower excited singlet state manifold and what the underlying reason is for the conformation-dependent Franck-Condon (FC) activity in the UV-excitation spectra. Studies on microsolvated methyl ferulate reveal potential coordination sites and the influence of such coordination on the spectroscopic properties.

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In molecular beam scattering experiments, an important technique for measuring product energy and angular distributions is velocity map imaging following photoionization of one or more scattered species. For studies with cold molecular beams, the ultimate resolution of such a study is often limited by the product detection process. When state-selective ionization detection is used, excess energy from the ionization step can transfer to kinetic energy in the target molecular ion-electron pair, resulting in measurable cation recoil.

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Urea hydrogen-bond donor strengths: bigger is not always better.

Phys Chem Chem Phys

December 2024

Department of Chemistry and Pharmaceutical Sciences, Amsterdam Institute of Molecular and Life Sciences (AIMMS), Vrije Universiteit Amsterdam, De Boelelaan 1108, 1081 HZ Amsterdam, The Netherlands.

The hydrogen-bond donor strength of ureas, widely used in hydrogen-bond donor catalysis, molecular recognition, and self-assembly, can be enhanced by increasing the size of the chalcogen X in the CX bond from O to S to Se and by introducing more electron-withdrawing substituents because both modifications increase the positive charge on the NH groups which become better hydrogen-bond donors. However, in 1,3-diaryl X-ureas, a steric mechanism disrupts the positive additivity of these two tuning factors, as revealed by our quantum-chemical analyses. This leads to an enhanced hydrogen-bond donor strength, despite a lower NH acidity, for 1,3-diaryl substituted O-ureas compared to the S- and Se-urea analogs.

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Understanding how alcohol molecules interact with the Brønsted acid sites (BAS) of zeolites is a prerequisite to the design of zeolite catalysts and catalytic processes. Here, we report IR spectra for the adsorption of ethanol on a highly crystalline sample of H-ZSM-5 zeolites exposed to ethanol gas at increasing pressure. We use density functional theory in combination with a FERMI resonance model to assign the measured spectra to a single adsorbed ethanol molecule per BAS.

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Probing the Hidden Photoisomerization of a Symmetric Phosphaalkene Switch.

Angew Chem Int Ed Engl

December 2024

Department of Chemistry-Ångström Laboratory, Uppsala University Box 523, 751 20, Uppsala, Sweden.

In this study, we present the synthesis and analysis of a novel, air-stable, and solvent-resistant phosphaalkene switch. Using this symmetric switch, we have demonstrated degenerate photoisomerization experimentally for the first time. With a combination of photochemical-exchange NMR spectroscopy, ultrafast transient absorption spectroscopy, and quantum chemical calculations, we elucidate the isomerization mechanism of this symmetric phosphaalkene, comparing it to two other known molecules belonging to this class.

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Quantification of Biomolecular Condensate Volume Reveals Network Swelling and Dissolution Regimes during Phase Transition.

Biomacromolecules

December 2024

Institute for Molecules and Materials, Radboud University, Heyendaalseweg 135, 6523 AJ Nijmegen, The Netherlands.

Article Synopsis
  • * Determining condensate volume is crucial for understanding their composition and how they influence localized biochemical reactions, but it's challenging due to their small size and viscosity.
  • * The study introduces two new methods for measuring these tiny volumes (1 μL or less), showing that physical cross-linking affects their size, with implications for cell biology supported by Flory-Huggins theory.
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Coacervation in systems chemistry.

Commun Chem

November 2024

Institute for Molecules and Materials, Radboud University, Nijmegen, the Netherlands.

Article Synopsis
  • A new collection of articles is launched that focuses on the intersection of coacervation and systems chemistry.
  • The Guest Editors emphasize the significance of blending these two fields of research.
  • They also point out the current challenges researchers face in this combined area of study.
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Shape transformations in peptide-DNA coacervates driven by enzyme-catalyzed deacetylation.

Soft Matter

December 2024

Institute for Molecules and Materials, Radboud University, Heyendaalseweg 135, 6523 AJ Nijmegen, The Netherlands.

Biomolecular condensates formed by liquid-liquid phase separation (LLPS) are important organizers of biochemistry in living cells. Condensate formation can be dynamically regulated, for example, by protein binding or enzymatic processes. However, how enzymatic reactions can influence condensate shape and control shape transformations is less well understood.

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Article Synopsis
  • - Glutathione (GSH) is an important tripeptide that protects cells from oxidative stress and removes toxic heavy metals, with the study focusing on its coordination with metals essential for biological redox processes: Zn, Cu, and Fe.
  • - Using infrared multiple photon dissociation (IRMPD) spectroscopy, researchers identified complexes formed between these metals and deprotonated GSH, revealing significant differences in metal coordination preferences based on experimental and theoretical vibrational spectra.
  • - The findings highlight common spectral features among the metal complexes while also indicating that the cysteine component of glutathione plays a crucial role in coordinating with these metals, which is relevant for understanding their biochemical functions.
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Quantum Hall effect in a CVD-grown oxide.

Nat Commun

November 2024

High Field Magnet Laboratory (HFML-EMFL), Radboud University, Nijmegen, The Netherlands.

Two-dimensional (2D) electron systems are promising for investigating correlated quantum phenomena. In particular, 2D oxides provide a platform that can host various quantum phases such as quantized Hall effect, superconductivity, or magnetism. The realization of such quantum phases in 2D oxides heavily relies on dedicated heterostructure growths.

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Nature uses discrete molecular building blocks to form polymers that assemble into multicomponent, multi-dynamic networks, inside (cytoskeleton) and outside (extracellular matrix) the cell. Both the intra-fibrous molecular dynamics and interactions between fibers dictate (non)linear mechanics, such as stress stiffening and relaxation, and ultimately biological function. Current synthetic systems capture only one dynamic process.

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Autoantibodies against a subunit of mitochondrial respiratory chain complex I in inclusion body myositis.

J Autoimmun

December 2024

Karolinska Institutet, Division of Rheumatology, Department of Medicine, Solna, Stockholm, Sweden; Department of Gastroenterology, Dermatology and Rheumatology, Karolinska University Hospital, Stockholm, Sweden; Karolinska Institutet, Center for Molecular Medicine, Stockholm, Sweden.

Background: Autoantibodies are found in up to 80 % of patients with idiopathic inflammatory myopathies (IIM) and are associated with distinct clinical phenotypes. Autoantibodies targeting cytosolic 5'-nucleotidase 1A (anti-NT5C1A) are currently the only known serum biomarker for the subgroup inclusion body myositis (IBM), although detected even in other autoimmune diseases. The aim of the study was to identify new autoimmune targets in IIM.

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Enantioselective Complexation of Protonated Tyrosine by a Chiral Crown-ether: The Nature of the Hydrogen Bonds Makes the Difference.

Chemphyschem

November 2024

International Research Frontiers Initiative (IRFI), Institute of Innovative Research, Institute of Science Tokyo, 4259 Nagatsuta-cho, Midori-ku, Yokohama, Japan.

Article Synopsis
  • The study examines the complexes formed between 18-crown-6-tetracarboxylic acid (18C6TA) and the two enantiomers of protonated tyrosine (L- and D-Tyr) using mass spectrometry, laser spectroscopy, and DFT calculations in a cryogenic ion trap.
  • Spectra reveal multiple isomers for each complex, with some isomers capable of interconverting under IR irradiation, while conformer-selective vibrational spectroscopy shows all structures featuring an internally hydrogen-bonded folded arrangement of the crown ether.
  • Complexes with L-Tyr display two NH…O interactions with the ether's oxygen and additional hydrogen bonds, while D-Tyr complexes are more flexible,
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Transport phase diagram and anomalous metallicity in superconducting infinite-layer nickelates.

Nat Commun

November 2024

High Field Magnet Laboratory (HFML-FELIX) and Institute for Molecules and Materials, Radboud University, Toernooiveld 7, 6525 ED, Nijmegen, Netherlands.

Article Synopsis
  • The study investigates whether high-T cuprates and infinite-layer nickelates share similar interactions affecting their normal and superconducting states, highlighting recent advancements in high-quality nickelate crystals.
  • Recent research shows that nickelates have a superconducting dome and comparable transport properties to cuprates, but the normal state behavior in strong magnetic fields needs further exploration.
  • Findings from new NdSrNiO films indicate that the normal-state resistivity in infinite-layer nickelates displays non-Fermi-liquid behavior across various doping levels, suggesting both systems share characteristics of a quantum critical phase despite differences in their charge dynamics.
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Environment-sensitive turn-on fluorescent probe enables live cell imaging of myeloperoxidase activity during NETosis.

Commun Chem

November 2024

Department of Synthetic Organic Chemistry, Institute for Molecules and Materials, Radboud University, Heyendaalseweg 135, 6525AJ, Nijmegen, The Netherlands.

Myeloperoxidase (MPO) plays an important role in the immune response of human neutrophils and has been implicated in autoimmune conditions, cardiovascular disorders, and neurodegeneration. Current methods to detect MPO activity rely on the detection of HOCl using activatable probes or require challenging experimental procedures. Therefore, these tools provide limited information about the dynamics and localization of MPO in complex molecular processes such as NETosis in real time.

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A series of Methionine (Met) derivatives, where either the amino group and/or the carboxylic acid group is blocked by acetyl and/or methyl ester functionalities, has been investigated by Collision Induced Dissociation-tandem mass spectrometry (CID-MS) and Infrared Multiple Photon Dissociation (IRMPD) spectroscopy. The CID-MS experiments were performed using a Fourier-transform ion-cyclotron-resonance (FT-ICR) mass spectrometer equipped with an electrospray ionization (ESI) source. The IRMPD spectra were recorded employing a Paul type ion-trap coupled with the free-electron laser (FEL) FELIX in the fingerprint region from 600 to 2000 cm.

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Mammalian cell-based production of glycans, glycopeptides and glycomodules.

Nat Commun

November 2024

Copenhagen Center for Glycomics, Departments of Cellular and Molecular Medicine, Faculty of Health Sciences, University of Copenhagen, Copenhagen, Denmark.

Access to defined glycans and glycoconjugates is pivotal for discovery, dissection, and harnessing of a range of biological functions orchestrated by cellular glycosylation processes and the glycome. We previously employed genetic glycoengineering by nuclease-based gene editing to develop sustainable production of designer glycoprotein therapeutics and cell-based glycan arrays that display glycans in their natural context at the cell surface. However, access to human glycans in formats and quantities that allow structural studies of molecular interactions and use of glycans in biomedical applications currently rely on chemical and chemoenzymatic syntheses associated with considerable labor, waste, and costs.

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The presence of two chlorine atoms in 1,2-dichloroethene allows for isomerization around the double bond. This isomerization can lead to rich photochemistry. We present a time-resolved pump-probe photoelectron spectroscopy measurement on both the - and - isomers of 1,2-dichloroethene.

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On the nature of hydrogen bonding in the HS dimer.

Nat Commun

November 2024

Department of Physical Chemistry II, Ruhr University Bochum, 44801, Bochum, Germany.

Hydrogen bonding is a central concept in chemistry and biochemistry, and so it continues to attract intense study. Here, we examine hydrogen bonding in the HS dimer, in comparison with the well-studied water dimer, in unprecedented detail. We record a mass-selected IR spectrum of the HS dimer in superfluid helium nanodroplets.

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Article Synopsis
  • Researchers are exploring the significant shape changes in thermosalient materials, which have potential uses in actuators and sensors, but the mechanisms behind these changes remain unclear.
  • A study has identified the order parameter for the phase transition in a specific molecular crystal, revealing that the transition barrier disappears at its transition temperature.
  • The research combines computational simulations and experimental methods, showing that specific vibrational modes relate to the phase transition, and suggests that applying a computational THz pulse can induce this phase change quickly.
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Infrared emission features are observed towards diverse astronomical objects in the interstellar medium (ISM). Generally, the consensus is that these IR features originate from polycyclic aromatic hydrocarbons (PAHs) and are hence named aromatic infrared bands (AIBs). More recently, it has been suggested that nitrogen substituted PAHs (PANHs) contribute to the AIBs as well and it has even been shown that nitrogen inclusion in PAHs can improve the match with the AIBs, specifically around the 6.

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