35 results match your criteria: "Institute for Molecular Science and Research Center for Computational Science[Affiliation]"
J Phys Chem B
May 2024
Department of Chemistry, Chiba University, 1-33 Yayoi, Inage-ku, Chiba 263-8522, Japan.
In this study, we investigated the water concentration dependence of the intermolecular vibrations of two hydrated ionic liquids (ILs), cholinium dihydrogen phosphate ([ch][dhp]) and cholinium bromide ([ch]Br), using femtosecond Raman-induced Kerr effect spectroscopy (fs-RIKES). The anions of the former and latter hydrated ILs are kosmotropic and chaotropic, respectively. We found that the spectral peak of ∼50 cm shifted to the low-frequency side in hydrated [ch][dhp], indicating the weakening of its intermolecular interactions.
View Article and Find Full Text PDFJ Phys Chem B
January 2023
Department of Chemistry, Chiba University, 1-33 Yayoi, Inage-ku, Chiba 263-8522, Japan.
This study compared the physical properties, e.g., glass transition temperature, melting point, viscosity, density, surface tension, and electrical conductivity, and the low-frequency spectra under 200 cm of three synthesized ionic liquids (ILs), triethylpentylphosphonium bis(fluorosulfonyl)amide ([P][NF]), ethoxyethyltriethylphosphonium bis(fluorosulfonyl)amide ([P][NF]), and triethyl[2-(ethylthio)ethyl]phosphonium bis(fluorosulfonyl)amide ([P][NF]), at various temperatures using femtosecond Raman-induced Kerr effect spectroscopy (fs-RIKES) and terahertz time-domain spectroscopy (THz-TDS).
View Article and Find Full Text PDFPhys Chem Chem Phys
September 2022
Department of Chemical Sciences, University of Padova, via Marzolo 1, Padova, Italy.
Molecules close to a metal nanoparticle (NP) have significantly different photophysical properties from those of the isolated one. In order to harness the potential of the molecule-NP system, appropriate design guidelines are required. Here, we propose an inverse design method of the optimal molecule-NP systems and incident electric field for desired photophysical properties.
View Article and Find Full Text PDFChem Asian J
October 2021
Institute for Molecular Science and Research Center for Computational Science, Nishigo-naka 38, Myodai-ji, 444-8585, Okazaki, Japan.
Discerning the origins of the phosphorescent aggregation-induced emission (AIE) from Pt(II) complexes is crucial for developing the broader range of photo-functional materials. Over the past few decades, several mechanisms of phosphorescent AIE have been proposed, however, not have been directly elucidated. Herein, we describe phosphorescence and deactivation processes of four class of AIE active Pt(II) complexes in the crystalline state based on experimental and theoretical investigation.
View Article and Find Full Text PDFJ Phys Chem A
May 2021
Department of Chemistry and Physics, Southeastern Louisiana University, SLU 10878, Hammond, Louisiana 70402, United States.
The alkaline earth metal trimer cluster dianions Be and Mg lie energetically above their respective monoanions and can therefore decay by electron autodetachment. Consequently, these dianions possess only short-lived resonance states, and here we study these states using regularized analytic continuation as well as complex absorbing potentials combined with a wide a variety of quantum chemistry methods including CCSD(T), SACCI, EOM-CCSD, CASPT2, and NEVPT2. For both Be and Mg, four low-energy resonance states corresponding to different occupation patterns of the two excess electrons in the two lowest p-σ and p-π orbitals are identified: Two states are dominated by doubly occupied configurations and can be characterized as showing σ and π aromatic character.
View Article and Find Full Text PDFACS Appl Mater Interfaces
February 2021
Department of Molecular Engineering, Graduate School of Engineering, Kyoto University, Kyoto-Daigaku-Katsura, Nishikyo-ku, Kyoto 615-8510, Japan.
The Ruddlesden-Popper (RP)-type layered perovskite is a candidate material for a new nitrogen oxide (NO) storage catalyst. Here, we investigate the adsorption and oxidation of NO on the (001) surfaces of RP-type oxide SrFeO for all of the terminations by comparing to those of simple perovskite SrFeO by the density functional theory (DFT) calculations. The possible (001) cleavages of SrFeO generate two FeO- and three SrO-terminated surfaces, and the calculated surface energies indicated that the SrO-terminated surface generated by the cleavage at the rock salt layer is the most stable one.
View Article and Find Full Text PDFPhys Chem Chem Phys
January 2021
Department of Chemistry, Graduate School of Science, Hiroshima University, Higashi-Hiroshima 739-8526, Japan.
Cinnamate derivatives are very useful as UV protectors in nature and as sunscreen reagents in daily life. They convert harmful UV energy to thermal energy through effective nonradiative decay (NRD) including trans → cis photoisomerization. However, the mechanism is not simple because different photoisomeirzation routes have been observed for different substituted cinnamates.
View Article and Find Full Text PDFJ Chem Theory Comput
April 2020
Institute for Molecular Science and Research Center for Computational Science, 38 Nishigonaka, Myodaiji, Okazaki 444-8585, Japan.
Electronic resonances are metastable ( + 1) electron states, in other words, discrete states embedded in an electronic continuum. While great progress has been made for certain types of resonances-for example, temporary anions created by attaching one excess electron to a closed shell neutral-resonances in general remain a great challenge of quantum chemistry because a successful description of the decay requires a balanced description of the bound and continuum aspect of the resonance. Here, a smoothed Voronoi complex absorbing potential (CAP) is combined with the XMS-CASPT2 method, which enables us to address the balance challenge by appropriate choice of the CAS space.
View Article and Find Full Text PDFChem Rec
May 2019
Center for Computational Natural Sciences and Bioinformatics, International Institute of Information Technology, Hyderabad, 500 032, India.
The gold-palladium (Au-Pd) bimetallic nanocluster (NC) catalyst in colloidal phase performs the homocoupling reaction of various aryl chlorides (Ar-Cl) under ambient conditions. We have systematically investigated various aspects of the Au-Pd NC catalysts with respect to this homocoupling reaction by using density functional theory (DFT) calculations, genetic algorithm (GA) approaches, and molecular dynamics (MD) simulations. Our findings include the geometric and electronic structures of the Au-Pd NC, the reactive Pd sites on the NC surface, the electron-donating effects of surrounding polymer matrix, the reaction mechanism of homocoupling reaction and rate-determining step, the inverse halogen dependence of the reaction, and the solvation dynamics at interface region between NC and polymer matrix in aqueous solution.
View Article and Find Full Text PDFJ Comput Chem
January 2019
SOKENDAI, The Graduate University for Advanced Studies, Nishigonaka, Myodaiji, Okazaki, 444-8585, Japan.
Recently, exciton-controlled hybridization-sensitive fluorescent oligonucleotide (ECHO) probe, which shows strong emission in the near-infrared region via hybridization to the target DNA and/or RNA strand, has been developed. In this work, photophysical properties of the chromophores of these probes and the fluorescent mechanism have been investigated by the SAC-CI and TD-DFT calculations. Three fluorescent cyanine chromophores whose excitation is challenging for TD-DFT methods, have been examined regarding the photo-absorption and emission spectra.
View Article and Find Full Text PDFJ Phys Chem A
April 2018
Department of Materials Engineering Science, Graduate School of Engineering Science , Osaka University, Toyonaka , Osaka 560-8531 , Japan.
The open-shell character dependences of the second hyperpolarizability, γ, are investigated for rectangular-shaped tetraradicaloid models, such as diradical dimers, using numerically exact solutions of the extended Hubbard model. The newly defined local diradical characters for intra- and intermolecular interactions (referred to as y and y, respectively) are compared to conventional global ones ( y and y) and provide a comprehensive understanding of the electronic structure of the system. The system shows two kinds of enhancements of the γ components, γ and γ (caused, respectively, by intra- and intermolecular diradical interactions): (i) a system with a large y ( y) (>∼0.
View Article and Find Full Text PDFJ Comput Chem
June 2018
Dipartimento di Chimica e Chimica Industriale, University of Pisa, Via G. Moruzzi 13, Pisa, 56124, Italy.
Recently, a method to calculate the absorption and circular dichroism (CD) spectra based on the exciton coupling has been developed. In this work, the method was utilized for the decomposition of the CD and circularly polarized luminescence (CPL) spectra of a multichromophoric system into chromophore contributions for recently developed through-space conjugated oligomers. The method which has been implemented using rotatory strength in the velocity form and therefore it is gauge-invariant, enables us to evaluate the contribution from each chromophoric unit and locally excited state to the CD and CPL spectra of the total system.
View Article and Find Full Text PDFJ Phys Chem A
September 2017
Institute for Molecular Science and Research Center for Computational Science, 38 Nishigo-Naka, Myodaiji, Okazaki 444-8585, Japan.
J Comput Chem
May 2017
Institut de Recherche de Chimie Paris, PSL Research University, CNRS, Chimie ParisTech, 11 rue Pierre et Marie Curie, Paris, F-75005, France.
The performances, in the description of excited state potential energy surfaces, of several density functional approximations representative of the currently most applied exchange correlation functionals' families have been tested with respect to post Hartree-Fock references (here Symmetry Adapted Cluster-Configuration Interaction results). An experimentally well-characterized intermolecular proton transfer reaction has been considered as test case. The computed potential energy profiles were analyzed both in the gas phase and in toluene solution, here represented as a polarizable continuum model.
View Article and Find Full Text PDFJ Org Chem
February 2017
Institute for Molecular Science and Research Center for Computational Science, Nishigonaka 38, Myodaiji, Okazaki 444-8585, Japan.
The reaction mechanism and origins of ligand-controlled selectivity, regioselectivity, and stereoselectivity of Ni-catalyzed (2 + 2 + 2) cycloadditions and alkenylative cyclizations of 1,6-ene-allenes and alkenes were studied by using density functional theory. The catalytic cycle involves intermolecular oxidative coupling and an intramolecular concerted 1,4-addition step to afford a stable metallacycloheptane intermediate; these steps determine both the regioselectivity and stereoselectivity. Subsequent C-C reductive elimination leads to the cyclohexane product, whereas the β-hydride elimination leads to the trans-diene product.
View Article and Find Full Text PDFJ Phys Chem Lett
October 2016
Department of Chemistry, Graduate School of Science, Hiroshima University, Higashi-Hiroshima 739-8526, Japan.
The nonradiative decay pathways of jet-cooled para-methoxy methylcinnamate (p-MMC) and para-methoxy ethylcinnamate (p-MEC) have been investigated by picosecond pump-probe and nanosecond UV-Deep UV pump-probe spectroscopy. The possible relaxation pathways were calculated by the (time-dependent) density functional theory. We found that p-MMC and p-MEC at low excess energy undergo multistep intersystem crossing (ISC) from the bright S (ππ*) state to the lowest triplet T (ππ*) state via two competing pathways through the T state in the time scale of 100 ps: (a) stepwise ISC followed after the internal conversion (IC) from S to the dark nπ* state; (b) direct ISC from the S to T states.
View Article and Find Full Text PDFChemphyschem
October 2016
Department of Chemistry and Biochemistry, University of Colorado at Boulder, Boulder, Colorado, 80309-0215, USA.
J Phys Chem A
March 2016
Department of Chemistry and Physics, Southeastern Louisiana University, SLU 10878, Hammond, Louisiana 70402, United States.
Low-lying π* resonance states of DNA and RNA bases have been investigated by the recently developed projected complex absorbing potential (CAP)/symmetry-adapted cluster-configuration interaction (SAC-CI) method using a smooth Voronoi potential as CAP. In spite of the challenging CAP applications to higher resonance states of molecules of this size, the present calculations reproduce resonance positions observed by electron transmission spectra (ETS) provided the anticipated deviations due to vibronic effects and limited basis sets are taken into account. Moreover, for the standard nucleobases, the calculated positions and widths qualitatively agree with those obtained in previous electron scattering calculations.
View Article and Find Full Text PDFJ Chem Theory Comput
May 2015
Institute for Molecular Science and Research Center for Computational Science, 38 Nishigo-naka, Myodaiji, Okazaki 444-8585, Japan.
Novel molecular photochemistry can be developed by combining high pressure and laser irradiation. For studying such high-pressure effects on the confined electronic ground and excited states, we extend the PCM (polarizable continuum model) SAC (symmetry-adapted cluster) and SAC-CI (SAC-configuration interaction) methods to the PCM-XP (extreme pressure) framework. By using the PCM-XP SAC/SAC-CI method, molecular systems in various electronic states can be confined by polarizable media in a smooth and flexible way.
View Article and Find Full Text PDFJ Comput Chem
January 2016
Department of Chemistry and Physics, Southeastern Louisiana University, SLU 10878, Hammond, Louisiana, 70402.
The complex absorbing potential (CAP)/symmetry-adapted cluster-configuration interaction (SAC-CI) method has been combined with a smooth Voronoi potential, which was recently introduced in the extrapolation procedure, to locate π* resonance states of small- to medium-size molecules. Here, the projected CAP/SAC-CI method is combined with this potential and used to calculate the double-bond and heteroaromatic π* resonances of acetaldehyde, butadiene, glyoxal, pyridine, pyrazine, and furan. As observed in the pilot applications, the corrected η-trajectories provide a stable resonance energy and width or lifetime regardless of the size parameter (rcut ) of the smooth Voronoi potential.
View Article and Find Full Text PDFJ Chem Phys
December 2014
Department of Chemistry, Graduate School of Science, Hiroshima University, Higashi-Hiroshima 739-8526, Japan.
The S1 state dynamics of methoxy methylcinnamate (MMC) has been investigated under supersonic jet-cooled conditions. The vibrationally resolved S1-S0 absorption spectrum was recorded by laser induced fluorescence and mass-resolved resonant two-photon ionization spectroscopy and separated into conformers by UV-UV hole-burning (UV-UV HB) spectroscopy. The S1 lifetime measurements revealed different dynamics of para-methoxy methylcinnamate from ortho-methoxy methylcinnamate and meta-methoxy methylcinnamate (hereafter, abbreviated as p-, o-, and m-MMCs, respectively).
View Article and Find Full Text PDFJ Chem Phys
October 2014
Institute for Molecular Science and Research Center for Computational Science, 38 Nishigo-naka, Myodaiji, Okazaki 444-8585, Japan.
Solvent effects on electronic excitation spectra are considerable in many situations; therefore, we propose an efficient and reliable computational scheme that is based on the symmetry-adapted cluster-configuration interaction (SAC-CI) method and the polarizable continuum model (PCM) for describing electronic excitations in solution. The new scheme combines the recently proposed first-order PCM SAC-CI method with the PTE (perturbation theory at the energy level) PCM SAC scheme. This is essentially equivalent to the usual SAC and SAC-CI computations with using the PCM Hartree-Fock orbital and integrals, except for the additional correction terms that represent solute-solvent interactions.
View Article and Find Full Text PDFJ Comput Chem
November 2014
Institute for Molecular Science and Research Center for Computational Science, 38 Nishigo-naka, Myodaiji, Okazaki, 444-8585, Japan.; Elements Strategy Initiative for Catalysts and Batteries (ESICB), Kyoto University Katsura, Kyoto, 615-8520, Japan.
The efficiency and accuracy of the perturbation-selection used in the symmetry-adapted cluster-configuration interaction (SAC-CI) calculations are investigated for several low-lying valence excited states of 21 medium-size molecules, including typical chromophores with heterocyclic macrocycles (free-base porphine, coumarin, indole, and BODIPY), nucleobases, amino acids (tyrosine and tryptophan), polycyclic aromatic hydrocarbons, and organometallics (ferrocene and Re(bpy)(CO)4+1). Benchmark SAC-CI calculations with up to 110 million operators are performed. The efficiency of the perturbation-selection depends on the molecular orbitals (MOs); therefore, the canonical MO and localized MO (LMO) obtained by Pipek-Mezey's method are examined.
View Article and Find Full Text PDFJ Chem Phys
September 2014
Department of Chemistry, Michigan State University, East Lansing, Michigan 48824, USA.
We use the scalar relativistic ionized equation-of-motion coupled-cluster approaches, correlating valence and semi-core electrons and including up to 3-hole-2-particle terms in the ionizing operator, to investigate the photoelectron spectrum of Au₃⁻. We provide an accurate assignment of peaks and shoulders in the experimental photoelectron spectrum of Au₃⁻ for the first time.
View Article and Find Full Text PDFJ Chem Theory Comput
September 2014
Institute for Molecular Science and Research Center for Computational Science, 38 Nishigo-naka, Myodaiji, Okazaki, 444-8585, Japan.
In this work, we investigated the properties of the triplet excited states of heterocyclic compounds including their geometries, electronic properties, and phosphorescence energies by using both the direct symmetry-adapted cluster-configuration interaction (SAC-CI) method and the TD-DFT approach with the PBE0 exchange-correlation functional (TD-PBE0). The target states are the ππ* and nπ* triplet states of furan, pyrrole, pyridine, p-benzoquinone, uracil, adenine, 9,10-anthraquinone, coumarin, and 1,8-naphthalimide as well as the Rydberg states. The present benchmark demonstrates that these two methods provide reasonably accurate geometries for the excited states of these heterocyclic compounds.
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