The genome sequence of the Eurasian minnow, (Linnaeus, 1758).

We present a genome assembly from an individual female (the Eurasian minnow; Chordata; Actinopteri; Cypriniformes; Leuciscidae). The genome sequence spans 950.50 megabases.

Towards the conservation of the crucian carp in Europe: Prolific hybridization but no evidence for introgression between native and non-native taxa.

Hybridization plays a pivotal role in evolution, influencing local adaptation and speciation. However, it can also reduce biodiversity, which is especially damaging when native and non-native species meet. Hybridization can threaten native species via competition (with vigorous hybrids), reproductive resource wastage and gene introgression.

A comparison between constructed wetland substrates: Impacts on microbial community and wastewater treatment.

Constructed wetlands (CWs) can play a crucial role in treating wastewater, and in the context of this study, the distillation byproduct of the whisky industry known as 'spent lees'. Here, we assess several different CW substrates (pea gravel, LECA and Alfagrog), with and without the addition of 20% biochar, in mesocosms set up to treat spent lees. Among the substrates tested, LECA + biochar and gravel + biochar showed promising results, with greater dissolved copper (dissCu) reduction, chemical oxygen demand (COD) removal, organic carbon (OC) reduction, and pH modulation.

The genome sequence of the nine-spined stickleback, (Linnaeus, 1758).

We present a genome assembly from an individual male (the nine-spined stickleback; Chordata; Actinopteri; Gasterosteiformes; Gasterosteidae). The genome sequence is 480.4 megabases in span.

The forensic potential of environmental DNA (eDNA) in freshwater wildlife crime investigations: From research to application.

Environmental DNA (eDNA) is widely used in biodiversity, conservation, and ecological studies but despite its successes, similar approaches have not yet been regularly applied to assist in wildlife crime investigations. The purpose of this paper is to review current eDNA methods and assess their potential forensic application in freshwater environments considering collection, transport and persistence, analysis, and interpretation, while identifying additional research required to present eDNA evidence in court. An extensive review of the literature suggests that commonly used collection methods can be easily adapted for forensic frameworks providing they address the appropriate investigative questions and take into consideration the uniqueness of the target species, its habitat, and the requirements of the end user.

Comparing DNA isolation and sequencing strategies for 16S rRNA gene amplicon analysis in biofilm containing environments.

Bacteria are primarily responsible for biological water treatment processes in constructed wetland systems. Gravel in constructed wetlands serves as an essential substrate onto which complex bacterial biofilms may successfully grow and evolve. To fully understand the bacterial community in these systems it is crucial to properly isolate biofilms and process DNA from such substrates.

Migration patterns and navigation cues of Atlantic salmon post-smolts migrating from 12 rivers through the coastal zones around the Irish Sea.

The freshwater phase of the first seaward migration of juvenile Atlantic salmon (Salmo salar) is relatively well understood when compared with our understanding of the marine phase of their migration. In 2021, 1008 wild and 60 ranched Atlantic salmon smolts were tagged with acoustic transmitters in 12 rivers in England, Scotland, Northern Ireland and Ireland. Large marine receiver arrays were deployed in the Irish Sea at two locations: at the transition of the Irish Sea into the North Atlantic between Ireland and Scotland, and between southern Scotland and Northern Ireland, to examine the early phase of the marine migration of Atlantic salmon smolts.

Integrating environmental DNA monitoring to inform eel () status in freshwaters at their easternmost range-A case study in Cyprus.

Despite significant population declines and targeted European Union regulations aimed at conservation, little attention has been given to their status at their easternmost range. This study applies wide-scale integrated monitoring to uncover the present-day eel distribution in Cyprus' inland freshwaters. These are subject to increasing pressures from water supply requirements and dam construction, as seen throughout the Mediterranean.

Maximising signal-to-noise ratios in environmental DNA-based monitoring.

Man's impacts on global ecosystems are increasing and there is a growing demand that these activities be appropriately monitored. Monitoring requires measurement of a response metric ('signal') that changes maximally and consistently in response to the monitored activity irrespective of other factors ('noise'), thus maximising the signal-to-noise ratio. Indices derived from time-consuming morphology-based taxonomic identification of organisms are a core part of many monitoring programmes.

Ancient DNA evidence for the ecological globalization of cod fishing in medieval and post-medieval Europe.

Understanding the historical emergence and growth of long-range fisheries can provide fundamental insights into the timing of ecological impacts and the development of coastal communities during the last millennium. Whole-genome sequencing approaches can improve such understanding by determining the origin of archaeological fish specimens that may have been obtained from historic trade or distant water. Here, we used genome-wide data to individually infer the biological source of 37 ancient Atlantic cod specimens ( 1050-1950 CE) from England and Spain.