1,919 results match your criteria: "Infectious Disease Institute[Affiliation]"

Background: Carbapenem-resistant Gram-negative bacteria (CR-GNB) develop resistance to many antimicrobials. To effectively manage infections caused by these organisms, novel agents and/or combinations of antimicrobials are required.

Objectives: Evaluated the in vitro efficacy of ceftazidime/avibactam in combination with other antimicrobials against CR-GNB.

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An agarose fluidic chip for high-throughput organoid imaging.

Lab Chip

January 2025

Laboratory of Cell Biology and Histology, Faculty of Biomedical, Pharmaceutical and Veterinary sciences, University of Antwerp, Universiteitsplein 1, Antwerp, Belgium.

Modern cell and developmental biology increasingly relies on 3D cell culture systems such as organoids. However, routine interrogation with microscopy is often hindered by tedious, non-standardized sample mounting, limiting throughput. To address these bottlenecks, we have developed a pipeline for imaging intact organoids in flow, utilizing a transparent agarose fluidic chip that enables efficient and consistent recordings with theoretically unlimited throughput.

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Arbovirus surveillance of wild-caught mosquitoes is an affordable and sensitive means of monitoring virus transmission dynamics at various spatial-temporal scales, and emergence and re-emergence during epidemic and interepidemic periods. A variety of molecular diagnostics for arbovirus screening of mosquitoes (known as xeno-monitoring) are available, but most provide limited information about virus diversity. Polymerase chain reaction (PCR)-based screening coupled with RNA sequencing is an increasingly affordable and sensitive pipeline for integrating complete viral genome sequencing into surveillance programs.

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Generation, interrogation, and future applications of microglia-containing brain organoids.

Neural Regen Res

December 2024

Laboratory of Experimental Hematology, Vaccine and Infectious Disease Institute (Vaxinfectio), University of Antwerp, Wilrijk, Belgium.

Article Synopsis
  • Brain organoids are 3D cultures derived from stem cells that mimic in vivo brain development and functions, offering advantages over traditional 2D cell cultures and animal models.
  • A significant limitation is their lack of diverse cell types, particularly from endodermal and mesodermal origins, prompting research on integrating functional vasculature and microglial cells.
  • The review focuses on immune-competent brain organoids, emphasizing their potential for studying neuronal network formation and inflammatory responses, while highlighting the need for further validation in therapeutic applications against inflammation-related neurodegeneration.
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Linear Mixed Modeling of Federated Data When Only the Mean, Covariance, and Sample Size Are Available.

Stat Med

January 2025

Interuniversity Institute for Biostatistics and Statistical Bioinformatics (I-BioStat), Data Science Institute (DSI), Hasselt University, Hasselt, Belgium.

In medical research, individual-level patient data provide invaluable information, but the patients' right to confidentiality remains of utmost priority. This poses a huge challenge when estimating statistical models such as a linear mixed model, which is an extension of linear regression models that can account for potential heterogeneity whenever data come from different data providers. Federated learning tackles this hurdle by estimating parameters without retrieving individual-level data.

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Characterization of Newly Isolated Bacteriophages Targeting Carbapenem-Resistant Klebsiella pneumoniae.

J Microbiol

December 2024

Department of Microbiology, School of Medicine, Kyungpook National University, Gukchaebosang-Ro 680, Jung-Gu, Daegu, 41944, Republic of Korea.

Klebsiella pneumoniae, a Gram-negative opportunistic pathogen, is increasingly resistant to carbapenems in clinical settings. This growing problem necessitates the development of alternative antibiotics, with phage therapy being one promising option. In this study, we investigated novel phages targeting carbapenem-resistant Klebsiella pneumoniae (CRKP) and evaluated their lytic capacity against clinical isolates of CRKP.

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The spread of molecular markers of artemisinin partial resistance and diagnostic evasion in Eritrea: a retrospective molecular epidemiology study.

Lancet Microbe

December 2024

Drug Resistance and Diagnostics, Australian Defence Force Malaria and Infectious Disease Institute, Gallipolli Barracks, Enoggera, QLD, Australia; Australian Defence Force Malaria and Infectious Disease Institute Laboratory, QIMR Berghofer Medical Research Institute, Brisbane, QLD, Australia. Electronic address:

Background: Eritrea was the first African country to discontinue the use of histidine rich protein 2 (HRP2)-detecting rapid diagnostic tests (RDTs) for malaria diagnosis following reports of a high prevalence of pfhrp2/3-deleted Plasmodium falciparum parasites causing false-negative results in the country. Eritrea was also the first African country to report partial artemisinin resistance due to the P falciparum kelch13 (pfk13) Arg622Ile mutation. We aimed to characterise the spatial distribution of pfk13 mutants and their interactions with pfhrp2/3 deletions in Eritrea and to assess the role of the use of HRP2-detecting RDTs and antimalarial (artesunate-amodiaquine) therapy in the spread of the two variants.

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Article Synopsis
  • Viral suppression is crucial for ending the HIV epidemic, yet youth living with HIV in Nigeria experience lower rates of viral suppression compared to adults; a study aimed to identify risk factors contributing to this issue.
  • Out of 541 participants, 40% were found to be non-suppressed; significant risk factors included substance use, missed medication doses, and self-reported barriers to taking medication, while being on a first-line regimen and having supportive social networks reduced these risks.
  • The findings highlight the importance of addressing psychosocial behaviors and medication adherence in youth with HIV to improve viral suppression rates and ultimately achieve ART goals.
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Cellular respiration in dendritic cells: Exploring oxygen-dependent pathways for potential therapeutic interventions.

Free Radic Biol Med

February 2025

Laboratory of Experimental Hematology, Vaccine & Infectious Disease Institute (VAXINFECTIO), Faculty of Medicine and Health Sciences, University of Antwerp, 2610 Antwerp, Belgium; Center for Cell Therapy and Regenerative Medicine, Antwerp University Hospital, 2650 Edegem, Belgium.

Dendritic cells (DCs) are specialized antigen-presenting cells crucial for initiating and regulating adaptive immune responses, making them promising candidates for therapeutic interventions in various immune-mediated diseases. Increasing evidence suggests that the microenvironment in which cells are cultured, as well as the milieu in which they perform their functions, significantly impact their immunomodulatory properties. Among these environmental factors, the role of oxygen in DC biology and its significance for both their in vitro generation and in vivo therapeutic application require investigation.

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Pathogen genomics in healthcare: overcoming barriers to proactive surveillance.

Antimicrob Agents Chemother

December 2024

Microbial Genomic Epidemiology Laboratory, Center for Genomic Epidemiology, University of Pittsburgh, Pittsburgh, Pennsylvania, USA.

Pathogen genomic surveillance in healthcare has the potential to enhance patient safety by detecting outbreaks earlier, thereby reducing morbidity and mortality. Despite benefits, there are barriers to adoption, including cost, expertise, and lack of standardized methodologies and incentives. This commentary advocates for 1) investment from healthcare payors, public health, and regulatory bodies and 2) additional research on genomic surveillance for improving patient outcomes and reducing infections.

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Background: Relatively few studies have explored the impact of home telerehabilitation-based (HTB) programs on patients with post-COVID-19 syndrome. Thus, this study aimed to investigate the effect of HTB programs on the cardiopulmonary function, body composition, muscle strength, and quality of life (QoL) of patients with post-COVID-19 syndrome.

Methods: A quasi-experimental study was performed.

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Background: Point-of-care tests (POCT) can support diagnosis of patients with community acquired acute respiratory tract infections (CA-RTI) in primary care and thereby reduce uncertainty whether antibiotics may benefit patients. However, successful roll out of POCTs need to be built on a deep understanding of patients' perspectives on the place of POCTs in patient centred care.

Aim: To explore patients' perceptions of the value of POCTs during consultations for CA-RTI.

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Article Synopsis
  • Older people living with HIV in sub-Saharan Africa, particularly women, face a high prevalence of geriatric syndromes, with a study in Kampala, Uganda, finding that 94.4% of participants aged 60 and older had at least one syndrome.
  • Women demonstrated significantly higher rates of frailty, cognitive impairment, and falls compared to men, revealing important sex differences in health outcomes.
  • Factors such as older age, low education, being underweight, advanced HIV stages, and having multiple non-communicable diseases were associated with a greater number of geriatric syndromes, highlighting the need for targeted healthcare strategies for this population.
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  • Prenatal stress (PNS) negatively impacts offspring by disrupting immune development and causing behavioral issues, with the gut microbiome playing a crucial role in this process.
  • The study tested the hypothesis that PNS leads to an imbalance in tryptophan (Trp) metabolism and that the bacteria Parasutterella excrementihominis could mitigate these effects in stressed pregnant mice.
  • Results showed that P. excrementihominis treatment reduced excessive maternal gut Trp levels and inflammation, which in turn improved the inflammatory and behavioral outcomes in the offspring affected by PNS.
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Article Synopsis
  • T cells and their receptors (TCRs) are essential for understanding immune responses but are often overlooked in single-cell analysis, which typically focuses on gene expression.
  • The authors created a comprehensive T cell atlas from 12 major studies, involving 500,000 T cells across various diseases, and found challenges in accurately labeling cell types using standard methods.
  • They propose a TCR-first approach, using a semi-supervised method, to better identify T cell characteristics and dynamics, potentially enhancing immunotherapy and diagnostic strategies.
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Antimicrobial resistance (AMR) is a global problem that results in high morbidity and mortality, particularly in low- and middle-income countries. Inappropriate use of antimicrobials is a major driver of AMR. This study aimed to evaluate the rate and quality of antimicrobial prescription and use at the University Teaching Hospital of Kigali (CHUK), a tertiary-referral teaching hospital.

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Despite their colonial experience with tropical medicine, Allied (United States, United Kingdom, Australia, and India) Armies in the Indo-Pacific region were surprised by the large number of Plasmodium vivax infections in their soldiers during the Second World War. Even after the institution of effective chemoprophylaxis with quinacrine, multiple cycles of clinical relapses often occurred when months of medication was discontinued. Nearly monthly symptomatic relapses (>10) were not unusual and resulted in important manpower losses after each campaign.

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Trauma and emergency care is a national priority in Uganda due to the high burden of injury, impacting a primarily young and rural population. With a significant gap in qualified emergency medicine professionals, a need exists to rapidly upskill the current health workforce and to strengthen access to learning for non-specialist emergency care providers nationally. This review was completed in partnership with the Ugandan Ministry of Health and a consortium of UK partners to support national emergency workforce capacity building in Uganda and East Africa.

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Comparative genomic and phenotypic analysis of low- and high-virulent Acinetobacter baumannii strains: Insights into antimicrobial resistance and virulence potential.

Microb Pathog

January 2025

Department of Microbiology, School of Medicine, Kyungpook National University, Daegu, South Korea; Untreatable Infectious Disease Institute, Kyungpook National University, Daegu, South Korea; Kyungpook National University Hospital National Culture Collection for Pathogens (KNUH-NCCP), Kyungpook National University Hospital, Daegu, South Korea. Electronic address:

Multi-drug resistant Acinetobacter baumannii poses a significant threat to public health. This study investigated the genomic features and phenotypic characteristics of two clinical A. baumannii strains, KBN10P01317 (low-virulent) and KBN10P01599 (high-virulent), which share the same sequence type and antimicrobial susceptibility profile.

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Background: The Global Point Prevalence Survey (PPS) of antimicrobial consumption and resistance has been widely undertaken to combat the global threat of antimicrobial resistance (AMR). This study was conducted in alignment with the Global-PPS in three tertiary care hospitals in Kerman, Iran, to evaluate antimicrobial consumption patterns.

Methods: The study was conducted from January 2020 to January 2021 in Afzalipour, Shafa, and Shahid Bahonar Hospitals.

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Mapping global public perspectives on mRNA vaccines and therapeutics.

NPJ Vaccines

November 2024

Laboratory of Data Discovery for Health Limited (D24H), Hong Kong Science Park, Hong Kong SAR, China.

Article Synopsis
  • The rapid development of mRNA vaccines during COVID-19 advanced vaccine technology but faced widespread public hesitance, posing a risk for future mRNA innovations.
  • A social listening analysis on Twitter from June 2022 to May 2023 showed a prevalent negative sentiment regarding mRNA vaccines, revealing concerns about their safety, effectiveness, and trustworthiness.
  • The findings highlight the necessity for targeted communication strategies to build public trust and enhance acceptance of mRNA-based medical treatments, which is crucial for responding to future health crises.
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Impact of Pseudomonas aeruginosa carriage on intensive care unit-acquired pneumonia: a European multicentre prospective cohort study.

Clin Microbiol Infect

November 2024

Julius Centre for Health Sciences and Primary Care, University Medical Centre Utrecht, Utrecht University, Utrecht, the Netherlands; Department of Medical Microbiology, University Medical Centre Utrecht, Utrecht University, Utrecht, the Netherlands.

Objectives: Pseudomonas aeruginosa (PA) is a common causative pathogen of pneumonia acquired in the intensive care unit (ICU). The aim of this study was to determine the incidence of PA ICU pneumonia (PAIP) and to quantify its independent association with PA colonization at different body sites.

Methods: Adult patients on mechanical ventilation at ICU admission were prospectively enrolled across 30 European ICUs.

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Identification of a 5-Plex Cytokine Signature that Differentiates Patients with Multiple Systemic Inflammatory Diseases.

Inflammation

November 2024

Primary Immune Deficiency Research Laboratory, Department of Internal Diseases and Pediatrics, Centre for Primary Immunodeficiency Ghent, Jeffrey Modell Diagnosis and Research Centre, Ghent University Hospital, Corneel Heymanslaan 10, 9000, Ghent, Belgium.

Patients with non-infectious systemic inflammation may suffer from one of many diseases, including hyperinflammation (HI), autoinflammatory disorders (AID), and systemic autoimmune disease (AI). Despite their clinical overlap, the pathophysiology and patient management differ between these disorders. We aimed to investigate blood biomarkers able to discriminate between patient groups.

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H-NS is a Transcriptional Repressor of the CRISPR-Cas System in Acinetobacter baumannii ATCC 19606.

J Microbiol

November 2024

Department of Microbiology, School of Medicine, Kyungpook National University, 680 Gukchaebosang- Ro, Jung-gu, Daegu, 41944, Republic of Korea.

Acinetobacter baumannii is a multidrug-resistant opportunistic pathogen primarily associated with hospital-acquired infections. The bacterium can gain multidrug resistance through several mechanisms, including horizontal gene transfer. A CRISPR-Cas system including several Cas genes could restrict the horizontal gene transfer.

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Case studies on the progress of cervical cancer screening programs in Bhutan, India, and Türkiye.

Vaccine

July 2024

Centre for Evaluation of Vaccination, Vaccine and Infectious Disease Institute, University of Antwerp, Belgium. Electronic address:

International stakeholders gathered in New Delhi, India, in December 2022 to share experiences on human papillomaviruses (HPV) prevention and control strategies. As part of a supplementary publication from the meeting proceedings, this paper describes secondary HPV prevention strategies highlighting the varying degrees of progress and challenges through case studies from Bhutan, India, and Türkiye. India has implemented national screening guidelines, primarily using visual inspection with acetic acid (VIA), but achieving a low coverage rate of 1.

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