383 results match your criteria: "Indraprastha Institute of Information Technology[Affiliation]"

Online Mental Health Communities (OMHCs), such as Reddit, have witnessed a surge in popularity as go-to platforms for seeking information and support in managing mental health needs. Platforms like Reddit offer immediate interactions with peers, granting users a vital space for seeking mental health assistance. However, the largely unregulated nature of these platforms introduces intricate challenges for both users and society at large.

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: The complex interaction between the gut and urinary microbiota underscores the importance of understanding microbial dysbiosis in pediatric urinary tract infection (UTI). However, the literature on the gut-urinary axis in pediatric UTIs is limited. This systematic review aims to summarize the current literature on the roles of gut and urinary dysbiosis in pediatric UTIs.

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Introduction: The development of the human gut microbiota is shaped by factors like delivery mode, infant feeding practices, maternal diet, and environmental conditions. Diet plays a pivotal role in determining the diversity and composition of the gut microbiome, which in turn impacts immune development and overall health during this critical period. The early years, which are vital for microbial shaping, highlight a gap in understanding how the shift from milk-based diets to solid foods influences gut microbiota development in infants and young children, particularly in Yaoundé, Cameroon.

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Alkhumra fever is a viral disease caused by the Alkhumra hemorrhagic fever virus (AHFV). It belongs to family , genus . AHFV is primarily transmitted to humans through the bite of infected ticks, for example, .

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ToxinPredictor: Computational models to predict the toxicity of molecules.

Chemosphere

February 2025

Infosys Centre for Artificial Intelligence, Indraprastha Institute of Information Technology Delhi (IIIT-Delhi), New Delhi, 110020, India; Department of Computational Biology, Indraprastha Institute of Information Technology Delhi (IIIT-Delhi), New Delhi, 110020, India; Center of Excellence in Healthcare, Indraprastha Institute of Information Technology Delhi (IIIT-Delhi), New Delhi, 110020, India. Electronic address:

Predicting the toxicity of molecules is essential in fields like drug discovery, environmental protection, and industrial chemical management. While traditional experimental methods are time-consuming and costly, computational models offer an efficient alternative. In this study, we introduce ToxinPredictor, a machine learning-based model to predict the toxicity of small molecules using their structural properties.

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Cavities in proteins perform diverse functions such as substrate binding, enzyme catalysis, passage for transportation of small molecules, and protein oligomerization. Often, the physical properties of these cavities are closely linked to the protein function; such as the hydrophobic lipid-binding cavities in lipid-binding proteins (LBPs) that protect lipid substrates from the larger aqueous milieu. Therefore, the characterization of protein cavities can provide valuable insights into protein structure-function relationships, hinting toward their mechanism of action while aiding in the identification of ligand binding sites that are essential for drug discovery approaches.

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Digital technologies are now integral to daily life. However, their applications for the health of populations remain largely untapped. Increasing cancer incidence, and it being the leading cause of death in every country in the world, justifies the need for increasing healthcare.

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Aging involves metabolic changes that lead to reduced cellular fitness, yet the role of many metabolites in aging is unclear. Understanding the mechanisms of known geroprotective molecules reveals insights into metabolic networks regulating aging and aids in identifying additional geroprotectors. Here we present AgeXtend, an artificial intelligence (AI)-based multimodal geroprotector prediction platform that leverages bioactivity data of known geroprotectors.

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Plant disease resistance (PDR) proteins are critical in identifying plant pathogens. Predicting PDR protein is essential for understanding plant-pathogen interactions and developing strategies for crop protection. This study proposes a hybrid model for predicting and designing PDR proteins against plant-invading pathogens.

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Article Synopsis
  • Autism Spectrum Disorder (ASD) involves a range of disorders influenced by complex genetic and environmental factors, suggesting that targeting multiple genes might enhance treatment effectiveness.
  • Various phytochemicals, known for their neuroprotective and antioxidant properties, may relieve ASD symptoms, but their specific molecular targets and mechanisms remain largely unclear.
  • This study explores six phytochemicals—Cannabidiol, Crocetin, Epigallocatechin-3-gallate, Fisetin, Quercetin, and Resveratrol—investigating their potential to target key proteins related to ASD through advanced methodologies like network pharmacology and molecular docking.
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Article Synopsis
  • CRISPR/Cas9 technology is effective for gene editing, but concerns about off-target effects remain significant, prompting research into more specific Cas9 variants.
  • A study compared the specific Cas9 from Francisella novicida (FnCas9) with the commonly used SpCas9 using advanced simulations to understand differences in their ability to target DNA accurately.
  • Findings showed that FnCas9's superior accuracy comes from its unique structural rearrangements and domain interactions rather than changes in the RNA:DNA hybrid, providing insights for developing Cas9 variants with enhanced precision for genome editing.
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The human microbiome is a sensor and modulator of physiology and homeostasis. Remarkable tractability underpins the promise of therapeutic manipulation of the microbiome. However, the definition of a normal or healthy microbiome has been elusive.

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Background: The hypothalamus, a small yet crucial neuroanatomical structure, integrates external (e.g., environmental) and internal (e.

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Background/aims: Crohn's disease (CD) and intestinal tuberculosis (ITB) are gastrointestinal (GI) inflammatory disorders with overlapping clinical presentations but diverging etiologies. The study aims to decipher CD and ITB-associated gut dysbiosis signatures and identify disease-associated co-occurring modules to evaluate whether this dysbiosis signature is a disease-specific trait or is a shared feature across diseases of diverging etiologies.

Methods: Disease-associated gut microbial modules were identified using statistical machine learning and co-abundance network analysis in controls, CD and ITB patients recruited as part of this study.

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A hybrid method for discovering interferon-gamma inducing peptides in human and mouse.

Sci Rep

November 2024

Department of Computational Biology, Indraprastha Institute of Information Technology, Okhla Industrial Estate, Phase III, (Near Govind Puri Metro Station), New Delhi, 110020, India.

Interferon-gamma (IFN-γ) is a versatile pleiotropic cytokine essential for both innate and adaptive immune responses. It exhibits both pro-inflammatory and anti-inflammatory properties, making it a promising therapeutic candidate for treating various infectious diseases and cancers. We present IFNepitope2, a host-specific technique to annotate IFN-γ inducing peptides, it is an updated version of IFNepitope introduced by Dhanda et al.

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Assessing systematic biases in farmers' local weather change perceptions.

Sci Rep

November 2024

Department of Economics, and Center for Agricultural and Rural Development, Iowa State University, Ames, Iowa, USA.

Scientific data concerning climate change are critical for designing mitigation and adaptation strategies. Equally important is how stakeholders perceive climate change because perceptions influence decision-making. In this paper, we employ spatially-delineated primary surveys to evaluate weather perception biases among corn and soybean farmers located on western frontier of the U.

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Glycation is the non-enzymatic reaction of glucose or its metabolites to proteins, causing irreversible changes. Methylglyoxal, a dicarbonyl, affects the structure and function of physiologically important proteins. Being a major circulatory protein, hemoglobin is highly prone to glycation.

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Synthetic and Natural Inhibitors of Mortalin for Cancer Therapy.

Cancers (Basel)

October 2024

Department of Computational Biology, Indraprastha Institute of Information Technology (IIIT) Delhi, Okhla Industrial Estate, Phase III, New Delhi 110020, India.

Article Synopsis
  • Upregulation of Mortalin, a stress chaperone, is linked to serious cancer processes like tumor development, aggressiveness, metastasis, and drug resistance.
  • Research shows that higher Mortalin levels help cancer cells grow, spread, and avoid cell death, which are common traits in cancers.
  • Mortalin is a promising target for cancer treatments, and various inhibitors (like peptides, small RNAs, and compounds) are being explored for their potential to combat cancer.
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  • Human microbiomes play a crucial role in health by impacting metabolism, immune functions, and neurological processes, but their complete complexity is still not fully understood.
  • The definition of a "healthy" microbiome is controversial due to variations in microbial communities and the difficulty in establishing a standard definition for health across different individuals and conditions.
  • The article highlights progress in microbiome research and identifies gaps in knowledge, proposing a roadmap that utilizes epidemiological methods to better understand the relationship between microbiomes and health.
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Article Synopsis
  • Autism Spectrum Disorder (ASD) is characterized by challenges in communication and social skills, often accompanied by depression that can go undiagnosed due to assessment difficulties.
  • A study using structural MRI analyzed the relationship between regional grey matter volume and co-occurring depression in adults with ASD, revealing that depression severity negatively correlates with grey matter in the right thalamus.
  • Findings highlight significant interactions between depression severity and core ASD symptoms, aiming to improve understanding and development of potential neuroimaging biomarkers for timely diagnosis and management of depression in individuals with ASD.
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HLA-DR4Pred2: An improved method for predicting HLA-DRB1*04:01 binders.

Methods

December 2024

Department of Computational Biology, Indraprastha Institute of Information Technology, Okhla Phase 3, New Delhi 110020, India. Electronic address:

HLA-DRB1*04:01 is associated with numerous diseases, including sclerosis, arthritis, diabetes, and COVID-19, emphasizing the need to scan for binders in the antigens to develop immunotherapies and vaccines. Current prediction methods are often limited by their reliance on the small datasets. This study presents HLA-DR4Pred2, developed on a large dataset containing 12,676 binders and an equal number of non-binders.

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Background: Dengue is the most re-emergent infection, with approximately 100 million new cases reported annually, yet no effective treatment or vaccine exists. Here, we aim to define the microbial community structure and their functional profiles in the dengue positive patients with varying disease severity.

Methodology/principal Findings: Hospital admitted 112 dengue-positive patients blood samples were analyzed by dual RNA-sequencing to simultaneously identify the transcriptionally active microbes (TAMs), their expressed genes and associated pathways.

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Article Synopsis
  • - Antimicrobial resistance (AMR) in bacterial species complicates the treatment of lower respiratory tract infections (LRTIs), increasing hospitalization and mortality rates among affected patients.
  • - A study analyzed bronchoalveolar lavage fluid from 84 LRTI patients using advanced sequencing methods, finding that a new technology (mNGS) was more effective in detecting pathogens compared to conventional methods, revealing a variety of respiratory and non-respiratory pathogens, as well as significant resistance genes.
  • - The findings emphasize the importance of mNGS in accurately identifying pathogens and AMR, which is critical for better understanding and addressing LRTIs and combating rising antibiotic resistance.
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