21,242 results match your criteria: "Indiana 46202; Roudebush Veterans Affairs Medical Center[Affiliation]"

miR-133b as a potential regulator of a synaptic NPTX2 protein in Alzheimer's disease.

Ann Clin Transl Neurol

October 2024

Department of Radiology and Imaging Sciences, Center for Computational Biology and Bioinformatics, Indiana Alzheimer's Disease Research Center, Indiana University School of Medicine, Indianapolis, Indiana, 46202, USA.

Article Synopsis
  • Scientists found a protein called NPTX2 that can help identify Alzheimer's disease.
  • *They studied tiny molecules called miRNAs and discovered that one called miR-133b is linked to Alzheimer's and brain health.
  • *The research shows that miR-133b might help the NPTX2 protein work better, which could be important for understanding Alzheimer's.
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Background: Understanding the causal pathways, systems, and mechanisms through which exercise impacts human health is complex. This study explores molecular signaling related to whole-body insulin sensitivity (Si) by examining changes in skeletal muscle gene expression. The analysis considers differences by biological sex, exercise amount, and exercise intensity to identify potential molecular targets for developing pharmacologic agents that replicate the health benefits of exercise.

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Large-scale exome array summary statistics resources for glycemic traits to aid effector gene prioritization.

Wellcome Open Res

October 2023

MRC Epidemiology Unit, University of Cambridge School of Clinical Medicine, Institute of Metabolic Science, Cambridge Biomedical Campus, Cambridge, CB2 0QQ, UK.

Article Synopsis
  • Genome-wide association studies have found numerous genetic loci linked to glycemic traits, but connecting these loci to specific genes and biological pathways remains a challenge.
  • Researchers conducted meta-analyses of exome-array studies across four glycemic traits, analyzing data from over 144,000 participants, which led to the identification of coding variant associations in more than 60 genes.
  • The study revealed significant pathways related to insulin secretion, zinc transport, and fatty acid metabolism, enhancing understanding of glycemic regulation and making data available for further research.
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Managing the Bariatric Surgery Patient: Presurgery and Postsurgery Considerations.

Gastrointest Endosc Clin N Am

October 2024

Department of Gastroenterology and Hepatology, University of Alabama, Heersink School of Medicine, 1720 university Boulevard, Birmingham, AL 35294, USA. Electronic address:

Obesity has extensive health repercussions, and bariatric surgery remains a viable solution to address this issue. This article focuses on the preoperative and postoperative management strategies required to achieve successful and durable outcomes in bariatric surgery patients. Preoperative assessment includes appropriate patient selection, psychosocial evaluation, nutritional analysis, and behavioral/medical counseling.

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Cardiomyopathy is the leading cause of death in Duchenne muscular dystrophy (DMD); however, in the mdx mouse model of DMD, the cardiac phenotype differs from that seen in DMD-associated cardiomyopathy. Although some have used pharmacologic stress to stimulate injury and enhance cardiac pathology in the mdx model, many methods lead to high mortality with variable cardiac outcomes, and do not recapitulate the structural and functional cardiac changes seen in human disease. Here, we describe a simple and effective method to enhance the cardiac phenotype model in mdx mice using advanced 2D and 4D high-frequency ultrasound to monitor cardiac dysfunction progression in vivo.

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Non-coding cause of congenital heart defects: Abnormal RNA splicing with multiple isoforms as a mechanism for heterotaxy.

HGG Adv

October 2024

Department of Medical & Molecular Genetics, Indiana University School of Medicine, Indianapolis, IN 46202, USA; Department of Pediatrics, Indiana University School of Medicine, Indianapolis, IN 46202, USA. Electronic address:

Article Synopsis
  • Previous genetic testing mainly focused on coding variants, leaving non-coding causes largely unexplored; however, a new study identified a deep intronic variant in ZIC3 that impacts RNA splicing.
  • Experimental techniques, including CRISPR and mRNA sequencing, confirmed that this variant leads to abnormal ZIC3 isoforms that disrupt vital protein functions, highlighting the importance of non-coding variations in understanding congenital heart defects.
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Article Synopsis
  • Time perspective refers to how people perceive time, which can affect decision-making and behavior, and is linked to health risks.
  • The study explored the connection between time perspective and perceived social isolation among college students, focusing on social interaction anxiety as a mediating factor.
  • Findings showed that being future-oriented, having a positive view of the past, and enjoying the present were connected to lower levels of perceived social isolation, while a negative view of the past was associated with higher levels, influenced by anxiety in social situations.
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Advances in genetics led to the identification of hundreds of epilepsy-related genes, some of which are treatable with etiology-specific interventions. However, the diagnostic yield of next-generation sequencing (NGS) in unexplained epilepsy is highly variable (10-50%). We sought to determine the diagnostic yield and clinical utility of NGS in children with unexplained epilepsy that is accompanied by neurodevelopmental delays and/or is medically intractable.

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Elucidating the Functional Roles of Long Non-Coding RNAs in Alzheimer's Disease.

Int J Mol Sci

August 2024

Systems Biology Lab for Metabolic Reprogramming, Department of Human Genetics and Cell Biology, School of Medicine, Southern University of Science and Technology, Shenzhen 518055, China.

Article Synopsis
  • Alzheimer's disease (AD) is a complex disorder linked to cognitive decline and neuronal loss, and this study aims to analyze long non-coding RNAs (lncRNAs) in AD tissues compared to healthy ones.
  • The research involved processing RNA-Seq data from 527 samples to discover 31,574 new lncRNA genes and constructing a co-expression network between lncRNAs and mRNAs, highlighting functional clusters related to AD progression.
  • The findings suggest that lncRNAs play significant roles in stress response, metabolism, cell structure, and development, and they can help differentiate between various stages of AD and healthy controls, marking a novel contribution to AD research.
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A triple hormone receptor ER, AR, and VDR signature is a robust prognosis predictor in breast cancer.

Breast Cancer Res

September 2024

Department of Pathology and Laboratory Medicine, Weill Cornell Medicine, New York, NY, USA.

Background: Despite evidence indicating the dominance of cell-of-origin signatures in molecular tumor patterns, translating these genome-wide patterns into actionable insights has been challenging. This study introduces breast cancer cell-of-origin signatures that offer significant prognostic value across all breast cancer subtypes and various clinical cohorts, compared to previously developed genomic signatures.

Methods: We previously reported that triple hormone receptor (THR) co-expression patterns of androgen (AR), estrogen (ER), and vitamin D (VDR) receptors are maintained at the protein level in human breast cancers.

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Characterization of BioID tagging systems in budding yeast and exploring the interactome of the Ccr4-Not complex.

G3 (Bethesda)

November 2024

Center for Eukaryotic Gene Regulation and Department of Biochemistry and Molecular Biology, The Pennsylvania State University, University Park, PA 16802, USA.

The modified Escherichia coli biotin ligase BirA* was the first developed for proximity labeling of proteins (BioID). However, it has low activity at temperatures below 37°C, which reduces its effectiveness in organisms growing at lower temperatures, such as budding yeast. Multiple derivatives of the enzymes have been engineered, but a thorough comparison of these variations of biotin ligases and the development of versatile tools for conducting these experiments in Saccharomyces cerevisiae would benefit the community.

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Introduction: Weight recurrence (WR) affects > 20% of patients following Roux-en-Y gastric bypass (RYGB). Shortening of the common channel (CC) after RYGB (distal bypass) has been proposed for additional weight loss in patients with WR, but results vary, and concerns for vitamin deficiencies/malnutrition exist. Our aim was to determine whether the percentage of bowel bypassed after distal bypass is associated with the amount of postoperative weight loss.

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Article Synopsis
  • Probabilistic-based non-linear dimensionality reduction (PB-NL-DR) methods like t-SNE and UMAP are useful for visualizing complex data structures, but they can create inaccuracies in data relationships due to trade-offs between global and local preservation and randomness.
  • To combat these inaccuracies, the authors present ManiGraph, a visualization technique that enhances neighborhood fidelity in dimensionality reduction by creating dynamic graphs that measure region-adapted trustworthiness.
  • ManiGraph effectively addresses problems like overplotting in large datasets and has been validated in various applications, including machine learning, computational biology, and cancer research.
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Coupled pulsatile vascular and paravascular fluid dynamics in the human brain.

Fluids Barriers CNS

September 2024

Department of Radiology and Imaging Sciences, Indiana University School of Medicine, 355 West 16 Street, Suite 4100, Indianapolis, IN, 46202, USA.

Background: Cardiac pulsation propels blood through the cerebrovascular network to maintain cerebral homeostasis. The cerebrovascular network is uniquely surrounded by paravascular cerebrospinal fluid (pCSF), which plays a crucial role in waste removal, and its flow is suspected to be driven by arterial pulsations. Despite its importance, the relationship between vascular and paravascular fluid dynamics throughout the cardiac cycle remains poorly understood in humans.

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Article Synopsis
  • * It traces the history of research from the 1990s linkage studies to current genome-wide association studies, illustrating the evolution of this scientific field.
  • * The authors emphasize the importance of ethical and scientific scrutiny in this area of research and offer recommendations to promote social and ethical responsibility in future studies.
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Capillary-Assisted Assembly of Polymer Gel-Supported Lipid Bilayers.

Langmuir

September 2024

Department of Chemistry and Chemical Biology, Indiana University Indianapolis, 402 N. Blackford Street, Indianapolis, Indiana 46202, United States.

Article Synopsis
  • - The polymer-supported lipid bilayer is a promising technology for various biophysical and bioanalytical applications, but traditional methods for creating these bilayers on thick polymer substrates face challenges due to unfavorable conditions at the interface.
  • - New research introduces a capillary-assisted method for forming lipid bilayers on fully hydrated, micrometer-thick polyacrylamide gels, taking advantage of molecular crowding to stabilize the bilayer structure.
  • - This innovative approach allows for enhanced lipid mobility and self-healing properties in the polymer-supported lipid bilayers, suggesting better long-term stability compared to solid-supported lipid bilayers (SLBs).
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Article Synopsis
  • Vertebrate sexual dimorphism, traditionally linked to the type of gonads (testes or ovaries) and their hormone production, is now shown to also be influenced by sex chromosomes (XX or XY).
  • Using the Four-Core Genotypes (FCG) mouse model, the study reveals that both gonads and sex chromosomes affect the musculoskeletal system's development, with notable differences becoming more pronounced in older mice.
  • Findings indicate that while gonadal sex plays a significant role in musculoskeletal traits, sex chromosomes contribute meaningfully to differences in body composition and bone strength, particularly as the mice mature.
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Despite advances in wearable robots across various fields, there is no consensus definition or design framework for the application of this technology in rehabilitation or musculoskeletal (MSK) injury prevention. This paper aims to define wearable robots and explore their applications and challenges for military rehabilitation and force protection for MSK injury prevention. We conducted a modified Delphi method, including a steering group and 14 panelists with 10+ years of expertise in wearable robots.

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Predicting the impact of retinal vessel density on retinal vessel and tissue oxygenation using a theoretical model.

Math Biosci

November 2024

Department of Mathematical Sciences, Indiana University Indianapolis, 402 N. Blackford St, LD 270, Indianapolis, IN 46202, USA. Electronic address:

Vascular impairments, including compromised flow regulation, have been identified as significant contributors to glaucomatous disease. Recent studies have shown glaucoma patients with significantly reduced peripapillary, macular, and optic nerve head vessel densities occurring with early glaucomatous structural changes prior to detectable visual field loss. This study aims to quantify the potential impact of decreased vessel densities on retinal perfusion and oxygen metabolism.

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Background And Aims: Microbiota transplant therapy is an emerging treatment for ulcerative colitis. One proposed mechanism for the benefit of microbiota transplant therapy is through engraftment of donor microbiota. However, the kinetics of engraftment are unknown.

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Regulation of the IgE response by T follicular regulatory cells.

Allergol Int

January 2025

Department of Microbiology and Immunology, Indiana University School of Medicine, 950 W. Walnut St., R2 302 Indianapolis, IN 46202, USA. Electronic address:

Allergen-specific IgE is a major mediator of allergic responses and contributes greatly to allergic disease in the human population. Therapies that inhibit the production of IgE would be useful for lessening the burden of allergic disease. A great deal of research has focused on how IgE responses are regulated, and several factors that promote the production of allergic IgE have been characterized.

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Enhancing Radiology Education for Regional Campus Medical Students.

Acad Radiol

October 2024

Department of Radiology, Indiana University, 702 North Barnhill Drive, Room 1053̥, Indianapolis, Indiana 46202, USA. Electronic address:

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CTAB-crafted ZnO nanostructures for environmental remediation and pathogen control.

Sci Rep

September 2024

Materials and Modelling Laboratory, Department of Physics Faculty of Sciences Meknes, Moulay Ismail University, Meknes, Morocco.

This study addresses the critical need for efficient and sustainable methods to tackle organic pollutants and microbial contamination in water. The present work aim was to investigate the potential of multi-structured zinc oxide nanoparticles (ZnO NPs) for the combined photocatalytic degradation of organic pollutants and antimicrobial activity. A unique fusion of precipitation-cum-hydrothermal approaches was precisely employed to synthesize the ZnO NPs, resulting in remarkable outcomes.

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