1,205 results match your criteria: "Indian Institute of Technology Gandhinagar; vsoppina@gmail.com.[Affiliation]"

Article Synopsis
  • Genotyping is the analysis of an organism's DNA to determine its genetic traits and has applications in fields like agriculture, biomedicine, and conservation.
  • Genetic markers are categorized into random markers (like RFLP and AFLP) and functional markers (like SCoT and SRAP), with the latter being less utilized in animal science despite their advantages.
  • This review provides an overview of the different genotyping markers available, their benefits and limitations, and emphasizes the need for more use of functional markers in genetic research.
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  • * More than half of the nitrogen applied in agriculture is wasted, contaminating soil and water for decades, yet historical data on nitrogen surplus in India is limited.
  • * This study creates a comprehensive dataset of nitrogen surplus in India from 1966 to 2017, helping policymakers establish realistic management targets and promote sustainable agricultural practices.
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Estimation of the glacier-stored freshwater is important to understand the water security in the Himalayan region. While previous work has studied the western and central Himalayan glaciers, the eastern counterpart received less and more scattered attention. In this study, an attempt is made to quantify the total glacier-stored freshwater in the Brahmaputra basin and later compared with previous global models.

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  • The study analyzed global, regional, and national trends in injury burden and identified risk factors contributing to injuries using data from the GBD 2019.
  • In 2019, there were approximately 713.9 million injury incidents and 4.3 million injury-related deaths globally, with low bone mineral density emerging as the leading risk factor.
  • The findings emphasize the need for effective global injury prevention policies by highlighting the persistent impact of injuries on global health.
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Antimicrobial resistance (AMR) poses a critical threat to global public health, necessitating the development of novel strategies. AMR occurs when bacteria, viruses, fungi, and parasites evolve to resist antimicrobial drugs, making infections difficult to treat and increasing the risk of disease spread, severe illness, and death. Over 70% of infection-causing microorganisms are estimated to be resistant to one or several antimicrobial drugs.

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  • The study highlights the emerging interest in G-quadruplexes (GQs) beyond cancer and neurodegenerative diseases, focusing on their roles in viral genomes, particularly in human pathogens like the Japanese encephalitis virus (JEV).
  • Researchers identified eight potential GQ-forming motifs in JEV that are important for the virus's replication and assembly and confirmed their stability and ability to form GQs through various assays.
  • The compound BRACO-19 was found to bind effectively to these GQs, exhibiting antiviral properties by reducing viral replication and protein expression, underscoring the potential of GQs as targets for antiviral strategies against JEV.
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Characterization of a productive oil/gas well blowout through seismological methods is relatively uncommon. In this paper, we conduct an in-depth seismic evaluation of one of the world's most significant onshore oil well blowout incidents, which occurred in 2020 at the Baghjan oil field in Assam, northeast India. We show that the blowout and related on-site activities generated distinct signals that can be distinguished by their spectral characteristics, temporal variation in geometric spreading, and sharp attenuation of daytime noise in comparison to the nighttime.

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The generation of patterns by breaking the spatial symmetry in external confinement is a captivating area of physics. The emergence of patterns is a fundamental inquiry spanning various disciplines such as nonlinear optics, condensed matter physics, and fluid dynamics. The article investigates the generation of a variety of patterns in a one-dimensional binary mixture of Bose-Einstein condensate forming quantum droplets.

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The synthesis of a library of new biaryl-based carbazoles bidentate directing group-assisted C-H functionalization and preliminary screening of the anticancer properties of biaryl-based carbazoles is reported. While various classes of modified carbazoles are known for their applications in materials and medicinal chemistry, to our knowledge, the biological activities of designed biaryl-based carbazoles have been rarely known. Given the prominence of carbazoles in research in medicinal chemistry, we envisioned the scope for new scaffolds of carbazole-based biaryl structures.

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Engineered poly(vinylidene fluoride) (PVDF) with its diverse crystalline phases plays a crucial role in determining the performance of devices in piezo-, pyro-, ferro- and tribo-electric applications, indicating the importance of distinct phase-detection in defining the structure-property relation. However, traditional characterization techniques struggle to effectively distinguish these phases, thereby failing to offer complete information. In this study, multimodal data-driven techniques have been employed for distinguishing different phases with a machine learning (ML) approach.

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Signature of a zonally symmetric semidiurnal tide during major sudden stratospheric warmings and plausible mechanisms: a case study.

Sci Rep

October 2024

Unidade Acadêmica de Física, Universidade Federal de Campina Grande, Avenida Aprígio Veloso, 882 Bloco CY2, 58429900, Campina Grande, PB, Brazil.

Sudden Stratospheric Warming (SSW) is a winter phenomenon initiated primarily by the enhanced stationary planetary waves (SPWs), characterized by an increase in polar stratospheric temperature by a few tens of kelvin for a few days. Wave-wave non-linear interaction can produce secondary waves, with sum and difference frequencies of the primary wave frequencies. The sun-synchronous semidiurnal tide is a major component at mid and high latitude middle atmosphere, which non-linearly interacts with the dominant SPW in the stratosphere to produce the zonally symmetric semidiurnal tide component (S0), as observed during two boreal SSWs.

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Clerodane diterpene 3-deoxycaryoptinol (Clerodin) selectively induces apoptosis in human monocytic leukemia (THP-1) cells and upregulates apoptotic protein caspase-3.

Free Radic Biol Med

November 2024

Vetriselvan Subramaniyan, Pharmacology Unit, Jeffrey Cheah School of Medicine and Health Sciences, Monash University Malaysia, 47500, Subang Jaya, Selangor, Malaysia. Electronic address:

Article Synopsis
  • 3-deoxycaryoptinol (Clerodin), a compound from Clerodendrum infortunatum leaves, shows promising anticancer effects on human monocytic leukemia cells (THP-1).
  • The research demonstrated clerodin's ability to induce apoptosis via various assays, including Annexin-V/PI for cell death and western blotting for mitochondrial apoptosis markers like caspase-3.
  • Notably, clerodin specifically targets the G2/M phase of the cell cycle and exhibits minimal toxicity to healthy human blood cells, highlighting its potential as a selective chemotherapeutic agent.
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Statistical analysis of the unique characteristics of secondary structures in proteins.

Comput Biol Chem

December 2024

Department of Chemical Engineering, Indian Institute of Technology (IIT) Gandhinagar, Palaj, Gujarat 382355, India; Center for Biomedical Engineering, Indian Institute of Technology (IIT) Gandhinagar, Palaj, Gujarat 382355, India. Electronic address:

Protein folding is a complex process influenced by the primary sequence of amino acids. Early studies focused on understanding whether the specificity or the conservation of properties of amino acids was crucial for folding into secondary structures such as α-helices, β-sheets, turns, and coils. However, with the advent of artificial intelligence (AI) and machine learning (ML), the emphasis has shifted towards the precise nature and occurrence of specific amino acids.

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Human Mastication Analysis-A DEM Based Numerical Approach.

Int J Numer Method Biomed Eng

December 2024

Advanced Materials Processing Research Group, Indian Institute of Technology Gandhinagar, Palaj, Gujarat, India.

Article Synopsis
  • - Mastication plays a critical role in digestion by breaking down and mixing food through coordinated jaw and tooth movements, but studying this process experimentally can be difficult and inefficient.
  • - The research utilizes Discrete Element Method (DEM) to simulate mastication, employing various breakage models to understand how different factors like particle shape and orientation affect food fragment distribution.
  • - The study enhances breakage models by including factors like elastic-plastic behavior and moisture content in food, showcasing the effectiveness of numerical modeling in analyzing complex mastication processes.
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Spatial variability in residence time of Beryllium in the Indian Ocean.

J Environ Radioact

December 2024

Geosciences Division, Physical Research Laboratory, Ahmedabad, 380009, Gujarat, India.

Residence time of an element in the ocean is a consequence of its chemical behaviour and the various biogeochemical processes governing its distribution, sources, and sinks. Precise estimation of the residence time of beryllium(Be) is necessary for its application as a tracer for understanding present and paleo-environmental processes. We utilise cosmogenic Be and terrestrially derived Be measurements from surface sediments to estimate the residence time of Be in the Indian Ocean.

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Article Synopsis
  • Organic solar cells (OSCs) are a promising solution for sustainable energy, and this study focuses on improving their development using advanced modeling techniques.
  • By integrating quantum mechanical descriptors with physics-informed machine learning models, researchers are able to bypass traditional experimentation limitations and create more accurate predictive models for OSC performance.
  • The study highlights the effectiveness of these models in identifying high-performance materials and emphasizes their role in bridging theoretical predictions with real-world results, contributing to the growth of sustainable energy technologies.
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The cationic peptide octaarginine (R8) is a prominent cell-penetrating peptide and has been extensively researched as a carrier of diverse cell-destined cargo. In this work, we describe the coassembly of R8 with small molecule thiazolyl benzenesulfonamide (TBS) derivatives. Physical complexation of R8 with three TBS derivatives across a range of weight ratios results in the formation of a distinctive set of nano- and microstructures.

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We present a revised version of the Drude polarizable carbohydrate force field (FF), focusing on refining the ring and exocyclic torsional parameters for hexopyranose monosaccharides. This refinement addresses the previously observed discrepancies between calculated and experimental NMR coupling values, particularly in describing ring dynamics and exocyclic rotamer populations within major hexose monosaccharides and their anomers. Specifically, α-MAN, β-MAN, α-GLC, β-GLC, α-GAL, β-GAL, α-ALT, β-ALT, α-IDO, and β-IDO were targeted for optimization.

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Surface features' morphology is crucial in designing lubricant-infused slippery surfaces (LIS). Microcavities were hypothesized to provide lower physical pinning, reduced droplet normal adhesion, and superior lubricant retention as compared to micropillars and untextured surfaces. Micropillars and microcavities ( = 10 ± 3 μm, = 8 ± 1 μm, = 17 ± 3 μm, = 1.

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Small molecules for impairing endoplasmic reticulum in cancer.

Org Biomol Chem

November 2024

Department of Chemistry, Indian Institute of Technology (IIT) Gandhinagar, Palaj, Gandhinagar, Gujarat, 382355, India.

The endoplasmic reticulum plays an important role in maintaining the protein homeostasis of cells as well as regulating Ca storage. An increased load of unfolded proteins in the endoplasmic reticulum due to alterations in the cell's metabolic pathway leads to the activation of the unfolded protein response, also known as ER stress. ER stress plays a major role in maintaining the growth and survival of various cancer cells, but persistent ER stress can also lead to cell death and hence can be a therapeutic pathway in the treatment of cancer.

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Widely-targeted in silico and in vitro evaluation of veratrum alkaloid analogs as FAK inhibitors and dual targeting of FAK and Hh/SMO pathways for cancer therapy: A critical analysis.

Int J Biol Macromol

November 2024

Centre for Biodiversity Exploration and Conservation (CBEC), 15, Kundan Residency, 4th Mile Mandla Road, Tilhari, Jabalpur, M.P 482021, India; Indian Institute of Technology Gandhinagar, Palaj Campus, Gujarat 382355, India; School of Sciences, Sanjeev Agrawal Global Educational (SAGE) University, Bhopal, M.P 462022, India; Prof. Wagner A. Vendrame's Laboratory, Environmental Horticulture Department, University of Florida, Institute of Food and Agricultural Sciences, 2550 Hull Rd., Gainesville, FL 32611, USA. Electronic address:

Article Synopsis
  • Focal Adhesive Kinase (FAK) is crucial in aggressive cancers, influencing processes like cancer progression and metastasis, with ongoing challenges in drug resistance and low survival rates for advanced stages, highlighting the need for new treatment options.
  • This study utilized a hybrid virtual screening method to identify potential FAK inhibitors by analyzing compounds from the PubChem database, ranking them based on their docking scores and interactions with the FAK catalytic domain.
  • The top three promising compounds, along with a known FAK inhibitor, showed consistent stability in molecular dynamics simulations and inhibited the proliferation of A549 cancer cells, indicating their potential as effective cancer treatments, although further validation is necessary.
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  • * Recent efforts to stop smoking haven't been put into action yet, and it’s important to see what could happen if smoking rates stay the same or improve.
  • * Researchers used models to predict health outcomes by 2050 based on different scenarios of smoking rates, showing that cutting smoking could greatly improve health and life expectancy.
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Advancements in wound management: integrating nanotechnology and smart materials for enhanced therapeutic interventions.

Discov Nano

October 2024

Biological and Life Sciences, School of Arts a Sciences, Ahmedabad University, Central Campus, Navrangpura, Ahmedabad, Gujarat, 380009, India.

Article Synopsis
  • - Wound management involves various techniques and materials to help heal both acute and chronic wounds, focusing on successful wound closure and preparing for surgical options when necessary.
  • - Dressings should promote healing while reducing fluid loss, pain, and infection; nanotechnology has been a game-changer by enhancing dressings with better strength and targeted drug delivery.
  • - Recent innovations like smart materials and personalized therapeutics are advancing wound care, aiming to improve healing speed and reduce scarring, ultimately shifting towards a patient-centered approach.
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Investigating the nonlinear dynamics of photosensitive Belousov-Zhabotinsky gels via bifurcation analyses.

Chaos

September 2024

Polymer Engineering Research Laboratory (PERL), Department of Chemical Engineering, Indian Institute of Technology Gandhinagar, Gujarat 382055, India.

Controlling the dynamics of active stimuli-responsive smart materials is essential to replicate the biomimetic functionalities at different length scales for a variety of biological systems-based applications. Photosensitive Belousov-Zhabotinsky (BZ) gels, powered by a nonlinear chemical oscillator, called a BZ reaction are one of the stimuli-responsive smart materials in demand due to their ability to continuously transduce chemical oscillations into mechanical deformations. The chemical oscillations in a BZ reaction and subsequent mechanical oscillations in photosensitive BZ gels occur due to the redox cycle of photosensitive ruthenium complex-based catalysts.

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Utilizing induced pluripotent stem cells (iPSCs) in drug screening and cell replacement therapy has emerged as a method with revolutionary applications. With the advent of patient-specific iPSCs and the subsequent development of cells that exhibit disease phenotypes, the focus of medication research will now shift toward the pathology of human diseases. Regular iPSCs can also be utilized to generate cells that assess the negative impacts of medications.

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