831 results match your criteria: "IBM T.J Watson Research Center[Affiliation]"

Defect-based quantum systems in wide bandgap semiconductors are strong candidates for scalable quantum-information technologies. However, these systems are often complicated by charge-state instabilities and interference by phonons, which can diminish spin-initialization fidelities and limit room-temperature operation. Here, we identify a pathway around these drawbacks by showing that an engineered quantum well can stabilize the charge state of a qubit.

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Applications of Blockchain Technology for Data-Sharing in Oncology: Results from a Systematic Literature Review.

Oncology

June 2020

Department of Biomedical Informatics and Department of Computer Science, Stony Brook University, Stony Brook, New York, USA.

Background: Timely sharing of electronic health records across providers, while ensuring data security and privacy, is essential for prompt care of cancer patients, as well as for the development of medical research and the enhancement of personalized medicine. Yet, it is not trivial to achieve efficient consent management, data exchange, and access-control policy enforcement, in particular, in decentralized settings, and given the gravity of the condition such as cancer. Using blockchain technology (BCT) has been recently advocated by research communities and gained momentum from the industry perspective.

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Multiscale computational models of the heart are being extensively investigated for improved assessment of drug-induced torsades de pointes (TdP) risk, a fatal side effect of many drugs. Model-derived metrics such as action potential duration and net charge carried by ionic currents () have been proposed as potential candidates for TdP risk stratification after being tested on small datasets. Unlike purely statistical approaches, model-derived metrics are thought to provide mechanism-based classification.

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Rectification of protein translocation in truncated pyramidal nanopores.

Nat Nanotechnol

November 2019

Division of Solid-State Electronics, Department of Engineering Sciences, Uppsala University, Uppsala, Sweden.

Solid-state nanopore technology presents an emerging single-molecule-based analytical tool for the separation and analysis of nanoparticles. Different approaches have been pursued to attain the anticipated detection performance. Here, we report the rectification behaviour of protein translocation through silicon-based truncated pyramidal nanopores.

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The fundamental parameters of majority and minority charge carriers-including their type, density and mobility-govern the performance of semiconductor devices yet can be difficult to measure. Although the Hall measurement technique is currently the standard for extracting the properties of majority carriers, those of minority carriers have typically only been accessible through the application of separate techniques. Here we demonstrate an extension to the classic Hall measurement-a carrier-resolved photo-Hall technique-that enables us to simultaneously obtain the mobility and concentration of both majority and minority carriers, as well as the recombination lifetime, diffusion length and recombination coefficient.

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Critical slowing down in biochemical networks with feedback.

Phys Rev E

August 2019

Department of Physics and Astronomy, Purdue University, West Lafayette, Indiana 47907, USA.

Article Synopsis
  • Scientists are studying how certain systems slow down when they are pushed to change, which is known as critical slowing down.
  • They looked at models that represent how cells respond to sudden changes versus gradual ones, using special theories from physics.
  • One example they explored was how T cells (a type of immune cell) react when a drug is added, which acts like a sudden change in their environment.
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There are numerous different odorant molecules in nature but only a relatively small number of olfactory receptor neurons (ORNs) in brains. This "compressed sensing" challenge is compounded by the constraint that ORNs are nonlinear sensors with a finite dynamic range. Here, we investigate possible optimal olfactory coding strategies by maximizing mutual information between odor mixtures and ORNs' responses with respect to the bipartite odor-receptor interaction network (ORIN) characterized by sensitivities between all odorant-ORN pairs.

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Cell assemblies and central pattern generators (CPGs) are related types of neuronal networks: both consist of interacting groups of neurons whose collective activities lead to defined functional outputs. In the case of a cell assembly, the functional output may be interpreted as a representation of something in the world, external or internal; for a CPG, the output 'drives' an observable (i.e.

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NeTFactor, a framework for identifying transcriptional regulators of gene expression-based biomarkers.

Sci Rep

September 2019

Icahn Institute for Genomics and Multiscale Biology and Department of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai, New York, NY, USA.

Biological and regulatory mechanisms underlying many multi-gene expression-based disease biomarkers are often not readily evident. We describe an innovative framework, NeTFactor, that combines network analyses with gene expression data to identify transcription factors (TFs) that significantly and maximally regulate such a biomarker. NeTFactor uses a computationally-inferred context-specific gene regulatory network and applies topological, statistical, and optimization methods to identify regulator TFs.

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Nonuniversal Transverse Electron Mean Free Path through Few-layer Graphene.

Phys Rev Lett

August 2019

Huygens-Kamerlingh Onnes Laboratorium, Leiden Institute of Physics, Leiden University, Niels Bohrweg 2, P.O. Box 9504, NL-2300 RA Leiden, Netherlands.

In contrast to the in-plane transport electron mean-free path in graphene, the transverse mean-free path has received little attention and is often assumed to follow the "universal" mean-free path (MFP) curve broadly adopted in surface and interface science. Here we directly measure transverse electron scattering through graphene from 0 to 25 eV above the vacuum level both in reflection using low energy electron microscopy and in transmission using electronvolt transmission electron microscopy. From these data, we obtain quantitative MFPs for both elastic and inelastic scattering.

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Article Synopsis
  • Various bioinformatics methods exist to simplify complex gene and protein networks into relevant subnetworks, but there is limited understanding of how they compare in identifying disease-related modules.
  • The 'Disease Module Identification DREAM Challenge' was launched as an open competition to evaluate these methods across various network types, using data from 180 genome-wide association studies to test the predicted modules' relevance to complex traits and diseases.
  • The assessment of 75 different module identification methods identified top-performing algorithms, revealing that most modules correspond to key disease-related pathways and potential therapeutic targets, providing valuable benchmarks and guidelines for studying human disease biology.
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Recent advancements in mediated communication technologies enable unfettered communication between patients and their providers. We explore patients' utilization of different direct and mediated communication modalities in a Direct Primary Care (DPC) clinic and the patient characteristics that predict their communication behavior patterns. Based on this knowledge, we developed 2 patient personas that explicate the nuances of patients who tend to prefer visiting the clinic in person versus those who use mediated modalities more often.

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Synthesis of biopolymers such as DNA, RNA, and proteins are biophysical processes aided by enzymes. The performance of these enzymes is usually characterized in terms of their average error rate and speed. However, because of thermal fluctuations in these single-molecule processes, both error and speed are inherently stochastic quantities.

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Artificial Intelligence for Clinical Trial Design.

Trends Pharmacol Sci

August 2019

IBM Research, IBM T.J. Watson Research Center, 10598 Yorktown Heights, NY, USA.

Clinical trials consume the latter half of the 10 to 15 year, 1.5-2.0 billion USD, development cycle for bringing a single new drug to market.

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Nonreciprocal microwave devices play critical roles in high-fidelity, quantum-nondemolition (QND) measurement schemes. They impose unidirectional routing of readout signals and protect the quantum systems from unwanted noise originated by the output chain. However, cryogenic circulators and isolators are disadvantageous in scalable superconducting architectures because they use magnetic materials and strong magnetic fields.

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Chemically Engineered Synthetic Lipid Vesicles for Sensing and Visualization of Protein-Bilayer Interactions.

Bioconjug Chem

August 2019

Department of Chemistry and Biochemistry , Southern Illinois University, Carbondale , Illinois 62901 , United States.

From pathogen intrusion to immune response, the cell membrane plays an important role in signal transduction. Such signals are important for cellular proliferation and survival. However, measurement of these subtle signals through the lipid membrane scaffold is challenging.

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Huntington's Disease (HD) is a neurodegenerative disorder with serious motor, cognitive, and behavioral symptoms. Chorea, a motor symptom of HD characterized by abrupt involuntary movements, is typically treated with tetrabenazine or certain off-label antipsychotics. Clinical trial evidence about the impact of these drugs in the HD population is scant.

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Developing a Data-driven Medication Indication Knowledge Base using a Large Scale Medical Claims Database.

AMIA Jt Summits Transl Sci Proc

May 2019

AI for Healthcare, IBM Research, Cambridge, MA, USA.

Medication-indication knowledge base (KB) is useful for clinical care and also a key enabler for secondary use of observational health data. Over the years there are several indication KBs being developed, however, they were built based on curated data sources and thus may not reflect actual clinical practice. The longitudinal observational health data contain information about real world practice of medication indication, but were rarely used in KB construc- tion.

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High nonradiative recombination, low diffusion length and band tailing are often associated with a large open circuit voltage deficit, which results in low efficiency of CuZnSnS (CZTS) solar cells. Recently, cation substitution in CZTS has gained interest as a plausible solution to suppress these issues. However, the common substitutes, Ag and Cd, are not ideal due to their scarcity and toxicity.

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Background And Aims: Perennial grasses are a global resource as forage, and for alternative uses in bioenergy and as raw materials for the processing industry. Marginal lands can be valuable for perennial biomass grass production, if perennial biomass grasses can cope with adverse abiotic environmental stresses such as drought and waterlogging.

Methods: In this study, two perennial grass species, reed canary grass (Phalaris arundinacea) and cocksfoot (Dactylis glomerata) were subjected to drought and waterlogging stress to study their responses for insights to improving environmental stress tolerance.

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As quantum circuits increase in size, it is critical to establish scalable multiqubit fidelity metrics. Here we investigate, for the first time, three-qubit randomized benchmarking (RB) on a quantum device consisting of three fixed-frequency transmon qubits with pairwise microwave-activated interactions (cross-resonance). We measure a three-qubit error per Clifford of 0.

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Transient, Consequential Increases in Extracellular Potassium Ions Accompany Channelrhodopsin2 Excitation.

Cell Rep

May 2019

Department of Physiology, David Geffen School of Medicine, University of California, Los Angeles, Los Angeles, CA 90095-1751, USA; Department of Neurobiology, David Geffen School of Medicine, University of California, Los Angeles, Los Angeles, CA 90095-1751, USA. Electronic address:

Channelrhodopsin2 (ChR2) optogenetic excitation is widely used to study neurons, astrocytes, and circuits. Using complementary approaches in situ and in vivo, we found that ChR2 stimulation leads to significant transient elevation of extracellular potassium ions by ∼5 mM. Such elevations were detected in ChR2-expressing mice, following local in vivo expression of ChR2(H134R) with adeno-associated viruses (AAVs), in different brain areas and when ChR2 was expressed in neurons or astrocytes.

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Topological superconductors can support localized Majorana states at their boundaries. These quasi-particle excitations obey non-Abelian statistics that can be used to encode and manipulate quantum information in a topologically protected manner. Although signatures of Majorana bound states have been observed in one-dimensional systems, there is an ongoing effort to find alternative platforms that do not require fine-tuning of parameters and can be easily scaled to large numbers of states.

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Background: A metagenome is a collection of genomes, usually in a micro-environment, and sequencing a metagenomic sample en masse is a powerful means for investigating the community of the constituent microorganisms. One of the challenges is in distinguishing between similar organisms due to rampant multiple possible assignments of sequencing reads, resulting in false positive identifications. We map the problem to a topological data analysis (TDA) framework that extracts information from the geometric structure of data.

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To develop a map of cell-cell communication mediated by extracellular RNA (exRNA), the NIH Extracellular RNA Communication Consortium created the exRNA Atlas resource (https://exrna-atlas.org). The Atlas version 4P1 hosts 5,309 exRNA-seq and exRNA qPCR profiles from 19 studies and a suite of analysis and visualization tools.

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