97 results match your criteria: "Graduate School of Natural and Applied Science[Affiliation]"
Cells
June 2021
Department of Bioengineering, Faculty of Engineering, Ege University, 35100 Izmir, Turkey.
The blood-brain barrier (BBB) is a highly selective cellular monolayer unique to the microvasculature of the central nervous system (CNS), and it mediates the communication of the CNS with the rest of the body by regulating the passage of molecules into the CNS microenvironment. Limitation of passage of substances through the BBB is mainly due to tight junctions (TJ) and adherens junctions (AJ) between brain microvascular endothelial cells. The importance of actin filaments and microtubules in establishing and maintaining TJs and AJs has been indicated; however, recent studies have shown that intermediate filaments are also important in the formation and function of cell-cell junctions.
View Article and Find Full Text PDFEat Weight Disord
February 2022
Aquatic Biotechnology Laboratory, Faculty of Fisheries, Atatürk University, Erzurum, Turkey.
Anxiety and obesity are two current phenomena. They are among the important public health problems with increasing prevalence worldwide. Although it is claimed that there are strong relations between them, the mechanism of this relationship has not been fully clarified yet.
View Article and Find Full Text PDFJ Biomater Appl
October 2021
Department of Bioengineering, Graduate School of Natural and Applied Science, Ege University, Izmir, Turkey.
Bacterial cellulose (BC), which can be produced by microorganisms, is an ideal biomaterial especially for tissue engineering and drug delivery systems thanks to its properties of high purity, biocompatibility, high mechanical strength, high crystallinity, 3 D nanofiber structure, porosity and high-water holding capacity. Therefore, wide ranges of researches have been done on the BC production process and its structural and physical modifications to make it more suitable for certain targeted biomedical applications thoroughly. BC's properties such as mechanical strength, pore diameter and porosity can be tuned or processes by using various polymer and compounds.
View Article and Find Full Text PDFJ Chromatogr A
January 2021
Dokuz Eylul University, Chemistry Department, Tınaztepe Campus, 35390, Izmir, Turkey. Electronic address:
Novel montmorillonite composites including ionic liquid were prepared and utilized as coating materials for solid phase microextraction fibers. Ionic liquids containing amino terminated imidazolium cations with methyl and benzyl groups and hydrophobic anions (bis(trifluoromethylsulfonyl)imide) and hydrophilic anions (bromide and tetrafluoroborate) were intercalated to KSF-montmorillonite using stainless steel wire as support by using the layer-by-layer technique. After optimization of experimental conditions, solid phase microextraction (SPME) coupled to gas chromatography/mass spectrometry (SPME-GC/MS) after derivatization by silylation and high performance liquid chromatography/diode array detector (SPME-HPLC/DAD) were developed for the determination of 16 phenolic compounds.
View Article and Find Full Text PDFInt J Biol Macromol
November 2020
Aquatic Biotechnology Laboratory, Faculty of Fisheries, Atatürk University, Erzurum, Turkey; Department of Nanoscience, Graduate School of Natural and Applied Science, Atatürk University, Erzurum, Turkey. Electronic address:
The toxicity of sodium carboxymethyl cellulose (CMC), which has GRAS status and has been determined as "ADI non specified", was re-evaluated with a new modelling and molecular-based data. For this purpose, CMC, a food additive, was injected to the yolk sac (food) of the zebrafish embryo by the microinjection method at the 4th hour of fertilization at different concentrations. As a result, it was found that CMC showed no toxic effects within the framework of the parameters studied.
View Article and Find Full Text PDFJ Fluoresc
September 2020
Faculty of Engineering, Department of Bioengineering, EgeUniversity, Izmir, Turkey.
The aim of this study is to synthesize oxazol-5-one derivatives, which have multi-functional properties. Nomenclatures of newly synthesized molecules are 4-(4-N,N-diethylaminophenylmethylene)-2-(3-thienyl)oxazol-5-one (4a) and 4-(4-(1,4,7,10-tetraoxa-13-azacyclopentadecyl)phenylmethylene)-2-(3-thienyl)oxazol-5-one (4b). These two novel derivatives contain pH sensitive and polymerizable groups.
View Article and Find Full Text PDFInt J Biol Macromol
October 2020
Yildiz Technical University, Faculty of Chemical and Metallurgical Engineering, Department of Bioengineering, 34220 Istanbul, Turkey.
Epilobium is a medicinal plant; its extracts are widely used traditional medicine due to their broad range of pharmacological and therapeutic properties. Its most prominent feature is its therapeutic effects on prostatic diseases. The aim of this study is preparation of controlled release system of Epilobium parviflorum, and determination of its potential of anticancer applications.
View Article and Find Full Text PDFCell Adh Migr
December 2020
Izmir Biomedicine and Genome Center, Izmir, Turkey.
Alterations of cell adhesion are involved in cancer progression, but the mechanisms underlying the progression and cell adhesion have remained poorly understood. Focusing on the complex between EpCAM, claudins and tetraspanins, we described a sequence of events by which of the molecules associate each other in ovarian cancer. The interactions between molecules were evaluated by immunoprecipitations and then immunoblotting.
View Article and Find Full Text PDFDaru
June 2020
Physics Department, Science and Letters Faculty, Istanbul Kultur University, Atakoy Campus, Bakirkoy, 34156, Istanbul, Turkey.
Background: Arginine-vasopressin (AVP) is a neuropeptide and provides learning and memory modulation. The AVP (4-5) dipeptide corresponds to the N-terminal fragment of the major vasopressin metabolite AVP (4-9), has a neuroprotective effect and used in the treatment of Alzheimer's and Parkinson's disease.
Methods: The main objective of the present study is to evaluate the molecular mechanism of AVP (4-5) dipeptide and to develop and synthesize chitosan nanoparticle formulation using modified version of ionic gelation method, to increase drug effectiveness.
Neurotoxicology
March 2020
Aquatic Biotechnology Laboratory, Fisheries Faculty, Atatürk University, Erzurum, Turkey; Aquaculture Department, Fisheries Faculty, Atatürk University, Erzurum, Turkey. Electronic address:
Nano-sized plastic particles formed from both daily use plastics and its debris have become a potential health and environmental problem due to features such as transportation through food webs and maternal transfer. Although many studies on the toxicity of plastics exist more detailed and molecular studies are needed to evaluate and review the effects of plastics especially in nano-size range. For this purpose, we have microinjected polystyrene nanoplastics (PNP) (20 nm) to the zebrafish embryo, which is one of the best model organisms for developmental toxicity studies, to simulate intake with food or maternal.
View Article and Find Full Text PDFBiomarkers
November 2019
Department of Biochemistry, Faculty of Pharmacy, Mersin University, Mersin , Turkey.
Fungicides describe all chemicals used to control fungi that infect plants. Luna Experience SC-400 is a new line of fungicide that consist of Fluopyram and Tebuconazole. In this study, We investigated the genotoxicty and cytotoxicty of Luna Experience-SC 400 using comet assay, micronucleus test and polychromatic erythrocytes number in rat bone marrow.
View Article and Find Full Text PDFCurr Comput Aided Drug Des
December 2020
Department of Physics, Science and Letters Faculty, Istanbul Kultur University, Atakoy Campus, Bakirkoy 34156, Istanbul, Turkey.
Background: Sulpiride, which has selective dopaminergic blocking activity, is a substituted benzamide antipsychotic drug playing a prominent role in the treatment of schizophrenia, which more selective and primarily blocks dopamine D2 and D3 receptor.
Objective: This study has two main objectives, firstly; the molecular modeling studies (MD and Docking, ADME) were conducted to define the molecular profile of sulpiride and sulpiridereceptor interactions, another to synthesize polymeric nanoparticles with chitosan, having the advantage of slow/controlled drug release, to improve drug solubility and stability, to enhance utility and reduce toxicity.
Methods: Molecular dynamic simulation was carried out to determine the conformational change and stability (in water) of the drug and the binding profile of D3 dopamine receptor was determined by molecular docking calculations.
Zootaxa
November 2018
Graduate School of Natural and Applied Science, Erzincan Binali Yıldırım University, Erzincan, Turkey..
This paper reports on mites of the family Pachylaelapidae collected in Bayburt Province, Turkey, during 2013-2015. Nine species were recorded in the genera Pachyseius, Olopachys, Pachylaelaps, and Onchodellus. Pachylaelaps (Longipachylaelaps) bayburtensis sp.
View Article and Find Full Text PDFChem Biol Interact
December 2018
Department of Biotechnology, Faculty of Science and Letters, Mersin University, Mersin, Turkey.
In recent years, advances in nano-scale technology have led to the use of nanoparticles in almost all areas of life. Nanoparticles (NP) have been acknowledged as one of the emerging environmental threats; however, studies in different components of environment are limited. Among the available nanoparticles, zirconium oxide nanoparticles are widely used in tooth coating and cosmetic products.
View Article and Find Full Text PDFJ Fluoresc
September 2018
Faculty of Science, Physics Department, Istanbul University, 34134, Istanbul, Turkey.
Papain is a protease enzyme with therapeutic properties that are very valuable for medical applications. Poly(ε-caprolactone) (PCL) is an ideal polymeric carrier for controlled drug delivery systems due to its low biodegradability and its high biocompatibility. In this study, the three-dimensional structure and action mechanism of papain were investigated by in vitro and in silico experiments using molecular dynamics (MD) and molecular docking methods to elucidate biological functions.
View Article and Find Full Text PDFMicron
December 2017
Department of Mathematic and Science Education, Faculty of Education, Kırıkkale University Yahsihan 71450, Kırıkkale, Turkey. Electronic address:
In this study, the Co and Mo addition to Fe-Mn based alloys was investigated to observe its effect on martensitic phase transformation. Two types of martensite structure occurred from the surface observations made by SEM for Co-added and Mo-added alloys morphologically in austenite grain. With the help of TEM studies, it was understood that these martensite structures are ε (h.
View Article and Find Full Text PDFMed Biol Eng Comput
October 2017
Department of Computer Engineering, Yildiz Technical University (YTU), 34220, Istanbul, Turkey.
In many computerized methods for cell detection, segmentation, and classification in digital histopathology that have recently emerged, the task of cell segmentation remains a chief problem for image processing in designing computer-aided diagnosis (CAD) systems. In research and diagnostic studies on cancer, pathologists can use CAD systems as second readers to analyze high-resolution histopathological images. Since cell detection and segmentation are critical for cancer grade assessments, cellular and extracellular structures should primarily be extracted from histopathological images.
View Article and Find Full Text PDFJ Mol Model
July 2016
Faculty of Science, Biochemistry Department, Ege University, 35100, Bornova, Izmir, Turkey.
Studies on generating artificial macromolecular receptors by molecular imprinting of synthetic polymers significantly emerged in the literature during last decades. The non-covalent approach, one of the three methods used in MIP synthesis, is more flexible for the choice of functional monomers, possible target molecules, and use of the imprinted materials. This study aims to investigate a serotonin imprinted polymer prepared by non-covalent approach using molecular modeling.
View Article and Find Full Text PDFInt J Biol Macromol
September 2016
Ege University, Department of Bioengineering, Faculty of Engineering, Izmir, Turkey. Electronic address:
Bacterial cellulose (BC) can be used in medical, biomedical, electronic, food, and paper industries because of its unique properties distinguishing it from plant cellulose. BC production was statistically optimized by Gluconacetobacter xylinus strain using carob and haricot bean (CHb) medium. Eight parameters were evaluated by Plackett-Burman Design and significant three parameters were optimized by Central Composite Design.
View Article and Find Full Text PDFFood Chem
October 2015
Ege University, Faculty of Pharmacy, Analytical Chemistry Department, 35100, Bornova, Izmir, Turkey; Ege University, Graduate School of Natural and Applied Science, Biotechnology Department, 35100, Bornova, Izmir, Turkey. Electronic address:
Herein, an electrochemical assay developed by differential pulse voltammetry (DPV) in combination with the disposable pencil graphite electrode (PGE) was progressed for sensitive and selective detection of gluten. Under the optimum experimental conditions, a linear concentration range of gluten was obtained from 20 to 100 μg/mL and consequently the detection limit was found to be 7.11 μg/mL.
View Article and Find Full Text PDFTalanta
October 2014
Ege University, Faculty of Pharmacy, Analytical Chemistry Department, Bornova, 35100 Izmir, Turkey; Ege University, Graduate School of Natural and Applied Science, Biotechnology Department, Bornova, 35100 Izmir, Turkey.
A sensitive and selective label free voltammetric aptasensor based on magnetic beads assay was performed for the first time in our study for monitoring of human activated protein C (APC), which is a serine protease (i.e., key enzyme of the protein C pathway).
View Article and Find Full Text PDFComput Biol Med
May 2013
Dokuz Eylul University, Department of Computer Engineering, The Graduate School of Natural and Applied Science, Izmir, Turkey.
This paper presents an ontology-based annotation system and BI-RADS (Breast Imaging Reporting and Data System) score reasoning with Semantic Web technologies in mammography. The annotation system is based on the Mammography Annotation Ontology (MAO) where the BI-RADS score reasoning works. However, ontologies are based on crisp logic and they cannot handle uncertainty.
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