The Index-based Subgraph Matching Algorithm with General Symmetries (ISMAGS): exploiting symmetry for faster subgraph enumeration.

Subgraph matching algorithms are used to find and enumerate specific interconnection structures in networks. By enumerating these specific structures/subgraphs, the fundamental properties of the network can be derived. More specifically in biological networks, subgraph matching algorithms are used to discover network motifs, specific patterns occurring more often than expected by chance.

Validity analysis of a unique infection surveillance system in the intensive care unit by analysis of a data warehouse built through a workflow-integrated software application.

Background: An electronic decision support programme was developed within the intensive care unit (ICU) that provides an overview of all infection-related patient data, and allows ICU physicians to add clinical information during patient rounds, resulting in prospective compilation of a database.

Aim: To assess the validity of computer-assisted surveillance (CAS) of ICU-acquired infection performed by analysis of this database.

Methods: CAS was compared with prospective paper-based surveillance (PBS) for ICU-acquired respiratory tract infection (RTI), bloodstream infection (BSI) and urinary tract infection (UTI) over four months at a 36-bed medical and surgical ICU.

SAMuS: service-oriented architecture for multisensor surveillance in smart homes.

The design of a service-oriented architecture for multisensor surveillance in smart homes is presented as an integrated solution enabling automatic deployment, dynamic selection, and composition of sensors. Sensors are implemented as Web-connected devices, with a uniform Web API. RESTdesc is used to describe the sensors and a novel solution is presented to automatically compose Web APIs that can be applied with existing Semantic Web reasoners.

DAIRRy-BLUP: a high-performance computing approach to genomic prediction.

In genomic prediction, common analysis methods rely on a linear mixed-model framework to estimate SNP marker effects and breeding values of animals or plants. Ridge regression-best linear unbiased prediction (RR-BLUP) is based on the assumptions that SNP marker effects are normally distributed, are uncorrelated, and have equal variances. We propose DAIRRy-BLUP, a parallel, Distributed-memory RR-BLUP implementation, based on single-trait observations ( Y: ), that uses the Average Information algorithm for restricted maximum-likelihood estimation of the variance components.

Isotropic non-white matter partial volume effects in constrained spherical deconvolution.

Diffusion-weighted (DW) magnetic resonance imaging (MRI) is a non-invasive imaging method, which can be used to investigate neural tracts in the white matter (WM) of the brain. Significant partial volume effects (PVEs) are present in the DW signal due to relatively large voxel sizes. These PVEs can be caused by both non-WM tissue, such as gray matter (GM) and cerebrospinal fluid (CSF), and by multiple non-parallel WM fiber populations.

On-body calibration and processing for a combination of two radio-frequency personal exposimeters.

Two radio-frequency personal exposimeters (PEMs) worn on both hips are calibrated on a subject in an anechoic chamber. The PEMs' response and crosstalk are determined for realistically polarised incident electric fields using this calibration. The 50 % confidence interval of the PEMs' response is reduced (2.

Radio-frequency electromagnetic field (RF-EMF) exposure levels in different European outdoor urban environments in comparison with regulatory limits.

Background: Concerns of the general public about potential adverse health effects caused by radio-frequency electromagnetic fields (RF-EMFs) led authorities to introduce precautionary exposure limits, which vary considerably between regions. It may be speculated that precautionary limits affect the base station network in a manner that mean population exposure unintentionally increases.

Aims: The objectives of this multicentre study were to compare mean exposure levels in outdoor areas across four different European cities and to compare with regulatory RF-EMF exposure levels in the corresponding areas.

NIMEFI: gene regulatory network inference using multiple ensemble feature importance algorithms.

One of the long-standing open challenges in computational systems biology is the topology inference of gene regulatory networks from high-throughput omics data. Recently, two community-wide efforts, DREAM4 and DREAM5, have been established to benchmark network inference techniques using gene expression measurements. In these challenges the overall top performer was the GENIE3 algorithm.

Algorithms for recollection of search terms based on the Wikipedia category structure.

The common user interface for a search engine consists of a text field where the user can enter queries consisting of one or more keywords. Keyword query based search engines work well when the users have a clear vision what they are looking for and are capable of articulating their query using the same terms as indexed. For our multimedia database containing 202,868 items with text descriptions, we supplement such a search engine with a category-based interface whose category structure is tailored to the content of the database.

Bayesian model selection of template forward models for EEG source reconstruction.

Several EEG source reconstruction techniques have been proposed to identify the generating neuronal sources of electrical activity measured on the scalp. The solution of these techniques depends directly on the accuracy of the forward model that is inverted. Recently, a parametric empirical Bayesian (PEB) framework for distributed source reconstruction in EEG/MEG was introduced and implemented in the Statistical Parametric Mapping (SPM) software.

Improvement of attenuation correction in time-of-flight PET/MR imaging with a positron-emitting source.

Unlabelled: Quantitative PET imaging relies on accurate attenuation correction. Recently, there has been growing interest in combining state-of-the-art PET systems with MR imaging in a sequential or fully integrated setup. As CT becomes unavailable for these systems, an alternative approach to the CT-based reconstruction of attenuation coefficients (μ values) at 511 keV must be found.

MAGIC: access portal to a cross-platform gene expression compendium for maize.

To facilitate the exploration of publicly available Zea mays expression data, we constructed a maize expression compendium, making use of an integration methodology and a consistent probe to gene mapping based on the 5b.60 sequence release of Z. mays.

A self-learning nurse call system.

The complexity of continuous care settings has increased due to an ageing population, a dwindling number of caregivers and increasing costs. Electronic healthcare (eHealth) solutions are often introduced to deal with these issues. This technological equipment further increases the complexity of healthcare as the caregivers are responsible for integrating and configuring these solutions to their needs.

Assessment and comparison of total RF-EMF exposure in femtocell and macrocell base station scenarios.

The indoor coverage of a mobile service can be drastically improved by deployment of an indoor femtocell base station (FBS). However, the impact of its proximity on the total exposure of the human body to radio-frequency (RF) electromagnetic fields (EMFs) is unknown. Using a framework designed for the combination of near-field and far-field exposure, the authors assessed and compared the RF-EMF exposure of a mobile-phone (MP) user that is either connected to an FBS or a conventional macrocell base station while in an office environment.

Temperature dependence of APD-based PET scanners.

Purpose: Solid state detectors such as avalanche photodiodes (APDs) are increasingly being used in PET detectors. One of the disadvantages of APDs is the strong decrease of their gain factor with increasing ambient temperature. The light yield of most scintillation crystals also decreases when ambient temperature is increased.

Design and simulation of a full-ring multi-lofthole collimator for brain SPECT.

Currently, clinical brain single photon emission computed tomography (SPECT) is mostly performed using rotating dual-head gamma cameras equipped with low-energy-high-resolution parallel-beam collimators (LEHR PAR). The resolution of these systems is rather poor (8-10 mm) and the rotation of the heavy gamma cameras can introduce misalignment errors. Therefore, we designed a static full-ring multi-lofthole brain SPECT insert for an existing ring of LaBr3 (5% Ce) detectors.

Spatial and temporal RF electromagnetic field exposure of children and adults in indoor micro environments in Belgium and Greece.

Personal radio frequency electromagnetic field (RF-EMF) exposure, or exposimetry, is gaining importance in the bioelectromagnetics community but only limited data on personal exposure is available in indoor areas, namely schools, crèches, homes, and offices. Most studies are focused on adult exposure, whereas indoor microenvironments, where children are exposed, are usually not considered. A method to assess spatial and temporal indoor exposure of children and adults is proposed without involving the subjects themselves.

Compliance boundaries for train protection systems.

Occupational exposure to non-ionising electromagnetic radiation emitted by train protection (TP) systems operating at ∼27 MHz is investigated in situ. In total, five TP systems of two different types, i.e.

Low-dose micro-CT imaging for vascular segmentation and analysis using sparse-view acquisitions.

The aim of this study is to investigate whether reliable and accurate 3D geometrical models of the murine aortic arch can be constructed from sparse-view data in vivo micro-CT acquisitions. This would considerably reduce acquisition time and X-ray dose. In vivo contrast-enhanced micro-CT datasets were reconstructed using a conventional filtered back projection algorithm (FDK), the image space reconstruction algorithm (ISRA) and total variation regularized ISRA (ISRA-TV).

Fast calibration of SPECT monolithic scintillation detectors using un-collimated sources.

Monolithic scintillation detectors for positron emission tomography and single-photon emission computed tomography (SPECT) imaging have many advantages over pixelated detectors. The use of monolithic crystals allows for reducing the scintillator cost per unit volume and increasing the sensitivity along with the energy and timing resolution of the detector. In addition, on thick detectors the depth-of-interaction can be determined without additional hardware.

Assessment of outdoor radiofrequency electromagnetic field exposure through hotspot localization using kriging-based sequential sampling.

In this study, a novel methodology is proposed to create heat maps that accurately pinpoint the outdoor locations with elevated exposure to radiofrequency electromagnetic fields (RF-EMF) in an extensive urban region (or, hotspots), and that would allow local authorities and epidemiologists to efficiently assess the locations and spectral composition of these hotspots, while at the same time developing a global picture of the exposure in the area. Moreover, no prior knowledge about the presence of radiofrequency radiation sources (e.g.

Stochastic method for determination of the organ-specific averaged SAR in realistic environments at 950 MHz.

The organ-specific averaged specific absorption rate (SARosa ) in a heterogeneous human body phantom, the Virtual Family Boy, is determined for the first time in five realistic electromagnetic environments at the Global System for Mobile Communications downlink frequency of 950 MHz. We propose two methods based upon a fixed set of finite-difference time-domain (FDTD) simulations for generating cumulative distribution functions for the SARosa in a certain environment: an accurate vectorial cell-wise spline interpolation with an average error lower than 1.8%, and a faster scalar linear interpolation with a maximal average error of 14.

Personal distributed exposimeter for radio frequency exposure assessment in real environments.

For the first time, a personal distributed exposimeter (PDE) for radio frequency (RF) measurements is presented. This PDE is designed based on numerical simulations and is experimentally evaluated using textile antennas and wearable electronics. A prototype of the PDE is calibrated in an anechoic chamber.