Repetitive DNAs: the 'invisible' regulators of insect adaptation and speciation.

Like other eukaryotes, insect genomes contain a large portion of repetitive sequences, particularly transposable elements and satellite DNAs. This review highlights key studies on repetitive DNAs and examines their structural, functional, and evolutionary impact on insect genomes. Repetitive sequences promote genetic diversification through mutations and large-scale rearrangements, playing a crucial role in shaping genomic architecture, aiding organismal adaptation, and driving speciation.

Evidence for widespread thermal acclimation of canopy photosynthesis.

Plants acclimate to temperature by adjusting their photosynthetic capacity over weeks to months. However, most evidence for photosynthetic acclimation derives from leaf-scale experiments. Here we address the scarcity of evidence for canopy-scale photosynthetic acclimation by examining the correlation between maximum photosynthetic rates (A) and growth temperature ( ) across a range of concurrent temperatures and canopy foliage quantity, using data from >200 eddy covariance sites.

The Proteomics Standards Initiative Standardized Formats for Spectral Libraries and Fragment Ion Peak Annotations: mzSpecLib and mzPAF.

Mass spectral libraries are collections of reference spectra, usually associated with specific analytes from which the spectra were generated, that are used for further downstream analysis of new spectra. There are many different formats used for encoding spectral libraries, but none have undergone a standardization process to ensure broad applicability to many applications. As part of the Human Proteome Organization Proteomics Standards Initiative (PSI), we have developed a standardized format for encoding spectral libraries, called mzSpecLib (https://psidev.

Orthopteran Neo-Sex Chromosomes Reveal Dynamics of Recombination Suppression and Evolution of Supergenes.

The early evolution of sex chromosomes has remained obscure for more than a century. The Vandiemenella viatica species group of morabine grasshoppers is highly suited for studying the early stages of sex chromosome divergence and degeneration of the Y chromosome. This stems from the fact that neo-XY sex chromosomes have independently evolved multiple times by X-autosome fusions with different autosomes.

Mycorrhizal Types Regulate Tree Spatial Associations in Temperate Forests: Ectomycorrhizal Trees Might Favour Species Coexistence.

In temperate mixed forests, dominant ectomycorrhizal (EM) tree species usually coexist with diverse arbuscular mycorrhizal (AM) understorey tree species. Here, we investigated the spatial associations between AM and EM trees in two > 20 ha temperate forest mega-plots to better understand the observed 'EM-dominant versus AM-diverse' coexistence. Overall, we found that positive spatial associations (e.

Characterising the Genomic Landscape of Differentiation Between Annual and Perennial Rye.

Annuality and perenniality represent two different life-history strategies in plants, and an analysis of genomic differentiation between closely related species of different life histories bears the potential to identify the underlying targets of selection. Additionally, understanding the interactions between patterns of recombination and signatures of natural selection is a central aim in evolutionary biology, because patterns of recombination shape the evolution of genomes by affecting the efficacy of selection. Here, our aim was to characterise the landscape of genomic differentiation between weedy annual rye ( L.

Enhancing economic multifunctionality without compromising multidiversity and ecosystem multifunctionality via forest enrichment.

Enriching tree species-poor and less productive forests by introducing economically valuable species is a strategy proposed for achieving multipurpose forest management. However, empirical evidence from managed and mature forests on the impact of this enrichment on ecological (multidiversity and ecosystem multifunctionality) and economic dimensions remains scarce, particularly when nonnative species are used. Here, we propose and test a framework that integrates economic multifunctionality, encompassing timber production-oriented goals and resistance against disturbances, with multidiversity and ecosystem multifunctionality in European beech forest stands enriched with conifers.

Herbarium specimens reveal a cryptic invasion of polyploid Centaurea stoebe in Europe.

Numerous plant species are expanding their native ranges due to anthropogenic environmental change. Because cytotypes of polyploid complexes often show similar morphologies, there may be unnoticed range expansions (i.e.

Conservation: Meeting biodiversity targets through rewilding.

Rewilding is gaining popularity as a restoration approach that promotes passive ecological succession or the active reintroduction of keystone species. A new study identifies the best areas for rewilding in Europe to meet the ambitious 2030 biodiversity protection targets.

Insects decline with host plants but coextinctions may be limited.

The loss of wild plant populations is often assumed to lead to coextinctions, particularly among specialized insects. Despite global declines in both terrestrial insects and plants, the relationship between these trends remains elusive. Here, we address this gap by analyzing the relationship between population trends of insects and their host plants in Germany, encompassing over 150,000 interactions among 3,429 plant and 2,239 insect species, including both pollinators (bees and hoverflies) and herbivores (butterflies, moths, and sawflies).

Relationship Between Genetic and Phenotypic Variations in Natural Populations of Perennial and Biennial Sagebrush.

Plant responses to environmental heterogeneity depend on life-history traits, which could relate to phenotypical and genetic characteristics. To elucidate this relationship, we examined the variation in population genetics and functional traits of short- and long-lived species that are co-occurring in the steppes of Mongolia. Mongolian steppes represent stressful and water-limited habitats, demanding phenotypic modifications in the short term and/or genetic adaptation in the long term.

Long-term nitrogen deposition reduces the diversity of nitrogen-fixing plants.

Biological nitrogen fixation is a fundamental part of ecosystem functioning. Anthropogenic nitrogen deposition and climate change may, however, limit the competitive advantage of nitrogen-fixing plants, leading to reduced relative diversity of nitrogen-fixing plants. Yet, assessments of changes of nitrogen-fixing plant long-term community diversity are rare.

Accounting for effects of growth rate when measuring ecological stability in response to pulse perturbations.

Ecological stability is a vital component of natural ecosystems that can inform effective conservation and ecosystem management. Furthermore, there is increasing interest in making comparisons of stability values across sites, systems and taxonomic groups, often using comparative synthetic approaches, such as meta-analysis. However, these synthetic approaches often compare/contrast systems where measures of stability mean very different things to the taxa involved.

Extreme rainfall events eliminate the response of greenhouse gas fluxes to hydrological alterations and fertilization in a riparian ecosystem.

Riparian ecosystems are essential carbon dioxide (CO) sources, which considerably promotes climate warming. However, the other greenhouse gas fluxes (GHGs), such as methane (CH) and nitrous oxide (NO), in the riparian ecosystems have not been well studied, and it remains unclear whether and how these GHG fluxes respond to extreme weather, fertilization and hydrological alterations associated with reservoir management. Here, we assessed the impacts of hydrological alterations (i.

Algae-fungi symbioses and bacteria-fungi co-exclusion drive tree species-specific differences in canopy bark microbiomes.

With over 3 trillion trees, forest ecosystems comprise nearly one-third of the terrestrial surface of the Earth. Very little attention has been given to the exploration of the above-ground plant microbiome of trees, its complex trophic interactions, and variations among tree species. To address this knowledge gap, we applied a primer-independent shotgun metatranscriptomic approach to assess the entire living canopy bark microbiome comprising prokaryotic and eukaryotic primary producers, decomposers, and various groups of consumers.

Characterizing and Implementing the Hamamatsu C12880MA Mini-Spectrometer for Near-Surface Reflectance Measurements of Inland Waters.

In recent decades, inland water remote sensing has seen growing interest and very strong development. This includes improved spatial resolution, increased revisiting times, advanced multispectral sensors and recently even hyperspectral sensors. However, inland waters are more challenging than oceanic waters due to their higher complexity of optically active constituents and stronger adjacency effects due to their small size and nearby vegetation and built structures.

Patterns of decomposition and functional traits for flower and leaf litter in tropical woody species.

The variation within and across species has afterlife effects on carbon and nutrient cycling through the alteration of litter decomposability. However, the focus on leaves may not reflect a whole-plant economic spectrum of strategies. Here, we assessed the patterns and predictors of flower and leaf-litter decomposition at the intra- (i.

Deep learning to capture leaf shape in plant images: Validation by geometric morphometrics.

Plant leaves play a pivotal role in automated species identification using deep learning (DL). However, achieving reproducible capture of leaf variation remains challenging due to the inherent "black box" problem of DL models. To evaluate the effectiveness of DL in capturing leaf shape, we used geometric morphometrics (GM), an emerging component of eXplainable Artificial Intelligence (XAI) toolkits.

Species traits, landscape quality and floral resource overlap with honeybees determine virus transmission in plant-pollinator networks.

Emerging infectious diseases pose a threat to pollinators. Virus transmission among pollinators via flowers may be reinforced by anthropogenic land-use change and concomitant alteration of plant-pollinator interactions. Here, we examine how species' traits and roles in flower-visitation networks and landscape-scale factors drive key honeybee viruses-black queen cell virus (BQCV) and deformed wing virus-in 19 wild bee and hoverfly species, across 12 landscapes varying in pollinator-friendly (flower-rich) habitat.

Upscaling biodiversity monitoring: Metabarcoding estimates 31,846 insect species from Malaise traps across Germany.

Mitigating ongoing losses of insects and their key functions (e.g. pollination) requires tracking large-scale and long-term community changes.

A global database of soil seed bank richness, density, and abundance.

A soil seed bank is the collective name for viable seeds that are stored naturally in the soil. At the species or population level, the ability to form a seed bank represents a strategy for (re)colonization following a disturbance or other change in the local environmental conditions. At the community level, seed banks are thought to buffer local diversity during periods of environmental change and are often studied in relation to the potential for passive habitat restoration.