1,002 results match your criteria: "Flatiron Institute[Affiliation]"

Thanks to its low or negative surface electron affinity and chemical inertness, diamond is attracting broad attention as a source material of solvated electrons produced by optical excitation of the solid-liquid interface. Unfortunately, its wide bandgap typically imposes the use of wavelengths in the ultraviolet range, hence complicating practical applications. Here, we probe the photocurrent response of water surrounded by single-crystal diamond surfaces engineered to host shallow nitrogen-vacancy (NV) centers.

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Yardangs sculpted by erosion of heterogeneous material.

Proc Natl Acad Sci U S A

July 2024

Department of Mathematics, Applied Mathematics Laboratory, Courant Institute of Mathematical Sciences, New York University, New York, NY 10012.

The recognizable shapes of landforms arise from processes such as erosion by wind or water currents. However, explaining the physical origin of natural structures is challenging due to the coupled evolution of complex flow fields and three-dimensional (3D) topographies. We investigate these issues in a laboratory setting inspired by yardangs, which are raised, elongate formations whose characteristic shape suggests erosion of heterogeneous material by directional flows.

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Our ability to calculate rate constants of biochemical processes using molecular dynamics simulations is severely limited by the fact that the time scales for reactions, or changes in conformational state, scale exponentially with the relevant free-energy barrier heights. In this work, we improve upon a recently proposed rate estimator that allows us to predict transition times with molecular dynamics simulations biased to rapidly explore one or several collective variables (CVs). This approach relies on the idea that not all bias goes into promoting transitions, and along with the rate, it estimates a concomitant scale factor for the bias termed the "CV biasing efficiency" γ.

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Standard deep learning algorithms require differentiating large nonlinear networks, a process that is slow and power-hungry. Electronic (CLLNs) offer potentially fast, efficient, and fault-tolerant hardware for analog machine learning, but existing implementations are linear, severely limiting their capabilities. These systems differ significantly from artificial neural networks as well as the brain, so the feasibility and utility of incorporating nonlinear elements have not been explored.

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Standard rulers such as the baryon acoustic oscillation (BAO) scale serve as workhorses for precision tests of cosmology, enabling distance measurements that probe the geometry and expansion history of our Universe. Aside from BAO measurements from the cosmic microwave background (CMB), most standard ruler techniques operate at relatively low redshifts and depend on biased tracers of the matter density field. In a companion paper [H.

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Article Synopsis
  • Researchers are developing a normative theory to better understand neuronal function by modeling neurons as optimal feedback controllers rather than just predictive entities.
  • This approach allows neurons to interact with their environment, including other neurons and external feedback, enabling them to adjust their output toward achieving specific desired states.
  • The new model, based on direct data-driven control, explains various neurophysiological phenomena and moves away from traditional neuron models, presenting a more biologically realistic framework for constructing neural networks.
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Identifying the sites of r-process nucleosynthesis, a primary mechanism of heavy element production, is a key goal of astrophysics. The discovery of the brightest gamma-ray burst (GRB) to date, GRB 221009A, presented an opportunity to spectroscopically test the idea that r-process elements are produced following the collapse of rapidly rotating massive stars. Here we present James Webb Space Telescope observations of GRB 221009A obtained +168 and +170 rest-frame days after the gamma-ray trigger, and demonstrate that they are well described by a SN 1998bw-like supernova (SN) and power-law afterglow, with no evidence for a component from r-process emission.

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Geometric Stiffness in Interlayer Exciton Condensates.

Phys Rev Lett

June 2024

Department of Physics, Columbia University, New York, New York 10027, USA.

Recent experiments have confirmed the presence of interlayer excitons in the ground state of transition metal dichalcogenide bilayers. The interlayer excitons are expected to show remarkable transport properties when they undergo Bose condensation. In this Letter, we demonstrate that quantum geometry of Bloch wave functions plays an important role in the phase stiffness of the interlayer exciton condensate.

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The prediction and realization of the quantum anomalous Hall effect are often intimately connected to honeycomb lattices in which the sublattice degree of freedom plays a central role in the nontrivial topology. Two-dimensional Wigner crystals, on the other hand, form triangular lattices without sublattice degrees of freedom, resulting in a topologically trivial state. Here, we discuss the possibility of spontaneously formed honeycomb-lattice crystals that exhibit the quantum anomalous Hall effect.

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The conversion of raw images into quantifiable data can be a major hurdle and time-sink in experimental research, and typically involves identifying region(s) of interest, a process known as segmentation. Machine learning tools for image segmentation are often specific to a set of tasks, such as tracking cells, or require substantial compute or coding knowledge to train and use. Here we introduce an easy-to-use (no coding required), image segmentation method, using a 15-layer convolutional neural network that can be trained on a laptop: Bellybutton.

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Emergent flat band and topological Kondo semimetal driven by orbital-selective correlations.

Nat Commun

June 2024

Department of Physics and Astronomy, Rice Center for Quantum Materials, Rice University, Houston, TX, 77005, USA.

Flat electronic bands are expected to show proportionally enhanced electron correlations, which may generate a plethora of novel quantum phases and unusual low-energy excitations. They are increasingly being pursued in d-electron-based systems with crystalline lattices that feature destructive electronic interference, where they are often topological. Such flat bands, though, are generically located far away from the Fermi energy, which limits their capacity to partake in the low-energy physics.

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Optically bright emitters in hexagonal boron nitride (hBN) often acting as a source of a single-photon are mostly attributed to point-defect centers, featuring localized intra-bandgap electronic states. Although vacancies, anti-sites, and impurities have been proposed as candidates, the exact physical and chemical nature of most hBN single-photon emitters (SPEs) within the visible region are still up for debate. Combining site-specific high-angle annular dark-field imaging (HAADF) with electron energy loss spectroscopy (EELS), we resolve and identify a few carbon substitutions among neighboring hBN hexagons, all within the same sample region, from which typical defect emission is observed.

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Measuring and modeling the dynamics of mitotic error correction.

Proc Natl Acad Sci U S A

June 2024

John A. Paulson School of Engineering and Applied Sciences, Harvard University, Cambridge, MA 02138.

Error correction is central to many biological systems and is critical for protein function and cell health. During mitosis, error correction is required for the faithful inheritance of genetic material. When functioning properly, the mitotic spindle segregates an equal number of chromosomes to daughter cells with high fidelity.

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Structure and dynamics of motor-driven microtubule bundles.

Soft Matter

July 2024

John A. Paulson School of Engineering and Applied Sciences, Harvard University, Cambridge, MA 02138, USA.

Connecting the large-scale emergent behaviors of active cytoskeletal materials to the microscopic properties of their constituents is a challenge due to a lack of data on the multiscale dynamics and structure of such systems. We approach this problem by studying the impact of depletion attraction on bundles of microtubules and kinesin-14 molecular motors. For all depletant concentrations, kinesin-14 bundles generate comparable extensile dynamics.

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Mechanics of spindle orientation in human mitotic cells is determined by pulling forces on astral microtubules and clustering of cortical dynein.

Dev Cell

September 2024

School of Engineering and Applied Sciences, Harvard University, Cambridge, MA 02138, USA; Department of Molecular and Cellular Biology, Harvard University, Cambridge, MA 02138, USA; Center for Computational Biology, Flatiron Institute, New York, NY 10010, USA.

The forces that orient the spindle in human cells remain poorly understood due to a lack of direct mechanical measurements in mammalian systems. We use magnetic tweezers to measure the force on human mitotic spindles. Combining the spindle's measured resistance to rotation, the speed at which it rotates after laser ablating astral microtubules, and estimates of the number of ablated microtubules reveals that each microtubule contacting the cell cortex is subject to ∼5 pN of pulling force, suggesting that each is pulled on by an individual dynein motor.

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Spatial genomic technologies characterize the relationship between the structural organization of cells and their cellular state. Despite the availability of various spatial transcriptomic and proteomic profiling platforms, these experiments remain costly and labor-intensive. Traditionally, tissue slicing for spatial sequencing involves parallel axis-aligned sections, often yielding redundant or correlated information.

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A unified framework for perceived magnitude and discriminability of sensory stimuli.

Proc Natl Acad Sci U S A

June 2024

Center for Computational Neuroscience, Flatiron Institute, Simons Foundation, New York, NY 10010.

The perception of sensory attributes is often quantified through measurements of sensitivity (the ability to detect small stimulus changes), as well as through direct judgments of appearance or intensity. Despite their ubiquity, the relationship between these two measurements remains controversial and unresolved. Here, we propose a framework in which they arise from different aspects of a common representation.

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Article Synopsis
  • The Hitomi x-ray satellite was designed to search for sterile neutrino dark matter through its unique spectrometers, but it was lost shortly after launch.
  • The only data analyzed for dark matter decay came from the Perseus cluster, and this new study used archival Hitomi data to look for dark matter decaying in the Milky Way.
  • The newly launched XRISM satellite is projected to have superior sensitivity in analyzing future data, specifically targeting dark matter masses between 1 to 18 keV, with significant implications for theories involving sterile neutrinos and heavy axionlike particles.
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Diverse neuro-imaging techniques measure different aspects of neural responses with distinct spatial and temporal resolutions. Relating measured neural responses across different methods has been challenging. Here, we take a step towards overcoming this challenge, by comparing the nonlinearity of neural dynamics measured across methods.

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Computational tools for cellular scale biophysics.

Curr Opin Cell Biol

August 2024

Center for Computational Biology, Flatiron Institute, 162 5th Ave, New York, 10010, NY, USA; Courant Institute of Mathematical Sciences, New York University, 251 Mercer St, New York, 10012, NY, USA.

Article Synopsis
  • Mathematical models are essential for understanding how biological components interact to manage the distribution of proteins, nutrients, and organelles within cells.
  • As research questions in biology become more detailed, these models also grow more complex, necessitating advanced analytic techniques and software.
  • The review focuses on recent tools that help analyze how cytoskeletal filaments, influenced by molecular motors and their surroundings, contribute to important cellular activities through fluid dynamics and material changes.
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The Individual Brain Charting (IBC) is a multi-task functional Magnetic Resonance Imaging dataset acquired at high spatial-resolution and dedicated to the cognitive mapping of the human brain. It consists in the deep phenotyping of twelve individuals, covering a broad range of psychological domains suitable for functional-atlasing applications. Here, we present the inclusion of task data from both naturalistic stimuli and trial-based designs, to uncover structures of brain activation.

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The cell nucleus is enveloped by a complex membrane, whose wrinkling has been implicated in disease and cellular aging. The biophysical dynamics and spectral evolution of nuclear wrinkling during multicellular development remain poorly understood due to a lack of direct quantitative measurements. Here, we characterize the onset and dynamics of nuclear wrinkling during egg development in the fruit fly when nurse cell nuclei increase in size and display stereotypical wrinkling behavior.

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In band insulators, without a Fermi surface, adiabatic transport can exist due to the geometry of the ground state wavefunction. Here we show that for systems driven at a small but finite frequency ω, transport likewise depends sensitively on quantum geometry. We make this statement precise by expressing the Kubo formula for conductivity as the variation of the time-dependent polarization with respect to the applied field.

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Article Synopsis
  • The study presents a method for integrating low-energy zero-modes into graphene nanoribbons (GNRs) to create materials with custom electronic properties for nanoelectronics.
  • The researchers successfully synthesized [3]triangulene-GNRs, which are chains of linked [3]triangulenes, demonstrating a narrow band gap of about 0.7 eV and the existence of topological end states verified by scanning tunneling spectroscopy.
  • Through theoretical calculations, the work reveals the mechanisms behind the selective synthesis and the role of gold-carbon bonds in the polymerization process on surfaces.
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The recently reported observation of VFTS 243 is the first example of a massive black-hole binary system with negligible binary interaction following black-hole formation. The black-hole mass (≈10M_{⊙}) and near-circular orbit (e≈0.02) of VFTS 243 suggest that the progenitor star experienced complete collapse, with energy-momentum being lost predominantly through neutrinos.

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