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MEMBPLUGIN: studying membrane complexity in VMD.

Bioinformatics

May 2014

Pharmacoinformatics group, Research Programme on Biomedical Informatics (GRIB), Universitat Pompeu Fabra (UPF)-Hospital del Mar Medical Research Institute (IMIM), Barcelona, Spain, Department of Physics, Tampere University of Technology, Tampere, Finland and Institute of Biomedical Engineering, National Research Council of Italy (ISIB-CNR), Padua, Italy.

Summary: Computer simulations are giving way to more complex and accurate studies of biological membranes by molecular dynamics (MD) simulations. The analysis of MD trajectories comprises the biophysical characterization of membrane properties or the study of protein-lipid interactions and dynamics. However, there is a lack of automated tools to analyse MD simulations of complex membrane or membrane-protein systems.

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