30 results match your criteria: "Federal Research Center Kazan Scientific Center of Russian Academy of Sciences[Affiliation]"

The pervaporation properties of membranes based on comb-like polysiloxanes when C-C alcohols are removed from water were studied for the first time. It was established that membranes based on comb-like polysiloxanes with linear aliphatic and organosilicon substituents have increased permeability selectivity for C alcohols. The obtained results were interpreted from the point of view of the solubility of the components of the separated mixture in polysiloxanes.

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Stimulus-responsive systems allowing for the controlled release of drugs [...

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Crystal structure of the GDP-bound GTPase Era from Staphylococcus aureus.

Biochem Biophys Res Commun

November 2024

Kazan Federal University, 18 Kremlyovskaya St., 420008, Kazan, Russian Federation. Electronic address:

GTPase Era from Staphylococcus aureus belongs to the TRAFAC superfamily of the TrmE-Era-EngA-EngB-Septin-like GTPases class and plays a significant role in the vital activity of this pathogenic microorganism as a maturation factor of the 30S ribosome subunit. However, the functions of this protein are not fully understood, making it a promising object for further study. Here, the 2.

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  • There is a rising interest in using titanium dioxide nanoparticles (TiO NPs) as antimicrobial agents due to their strong activity against bacteria and fungi, along with their low toxicity and high biocompatibility.
  • The review examines factors affecting TiO NPs' effectiveness, including size, shape, composition, microbial type, and synthesis methods, noting that smaller particles generally show better antibacterial properties.
  • It highlights that amorphous TiO NPs and those doped with inorganic compounds exhibit the best antimicrobial potential, emphasizing the diverse methodologies in synthesizing and analyzing these nanoparticles.
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  • Researchers discovered that Lactiplantibacillus plantarum 8p-a3, a probiotic strain, shows significant changes in its extracellular membrane vesicles when developing resistance to antibiotics (amoxicillin and clarithromycin).
  • These changes are linked to large genome rearrangements and alterations in how the strain responds to various antimicrobials, as well as an increase in virulence factors.
  • The study highlights how the structure and function of these vesicles may adapt to help the bacteria survive under the pressure of antibiotics, aiding in the understanding of probiotic safety and effectiveness.
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Crystal structure of GTPase YsxC from Staphylococcus aureus.

Biochem Biophys Res Commun

March 2024

Kazan Federal University, 18 Kremlyovskaya St., 420008, Kazan, Russian Federation. Electronic address:

Article Synopsis
  • The YsxC protein in Staphylococcus aureus belongs to a family of GTP-binding proteins crucial for assembling the 50S ribosomal subunit, highlighting its role in the bacteria's life cycle.
  • Recent studies suggest that targeting YsxC could lead to the development of new selective antimicrobials due to its unique structural features.
  • Researchers cloned the ysxC gene, overexpressed it in E. coli, and successfully purified and crystallized the protein, achieving high-quality diffraction data for comparison with similar proteins.
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Structural aspects of RimP binding on small ribosomal subunit from Staphylococcus aureus.

Structure

January 2024

Laboratory for Structural Analysis of Biomacromolecules, Federal Research Center «Kazan Scientific Center of Russian Academy of Sciences», Kazan 420111, Russian Federation; Laboratory of Structural Biology, Institute of Fundamental Medicine and Biology, Kazan Federal University, Kazan 420008, Russian Federation. Electronic address:

Article Synopsis
  • Ribosome biogenesis is a complex and energy-demanding process, where any small errors can lead to serious consequences for the cell, including death.
  • Biogenesis factors like RimP play a crucial role in this process by assisting the proper assembly of ribosomal proteins and rRNA.
  • This study details how RimP interacts with the 30S ribosomal subunit in Staphylococcus aureus, providing insights into its binding and structural dynamics through advanced techniques like cryo-EM and NMR spectroscopy.
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Phosphate solubilizing microorganisms (PSMs) in soil have been shown to reduce mineral phosphate fertilizer supplementation and promote plant growth. Nevertheless, only several P-solubilizing microorganisms capable of solubilizing both organic and mineral sources of soil phosphorus have been identified up to now. The aim of this study was to evaluate the inorganic soil phosphate solubilizing activity of phytate-hydrolyzing soil isolates.

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It is known that four peptide fragments of predominant protein in human semen Semenogelin 1 (SEM1) (SEM1(86-107), SEM1(68-107), SEM1(49-107) and SEM1(45-107)) are involved in fertilization and amyloid formation processes. In this work, the structure and dynamic behavior of SEM1(45-107) and SEM1(49-107) peptides and their N-domains were described. According to ThT fluorescence spectroscopy data, it was shown that the amyloid formation of SEM1(45-107) starts immediately after purification, which is not observed for SEM1(49-107).

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  • Ribosome biogenesis is a detailed process involving the maturation of ribosomal subunits, which requires the coordination of various proteins, RNAs, and enzymes.
  • The study focuses on ribosomal binding factor A (RbfA), detailing its crystal and NMR structures as well as a cryo-EM visualization of the 30S-RbfA complex.
  • The findings reveal that RbfA's role in ribosomal subunit maturation is similar in bacteria and mitochondria, suggesting potential targets for developing new antibiotics against bacterial infections.
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Generative model based on junction tree variational autoencoder for HOMO value prediction and molecular optimization.

J Cheminform

February 2023

Computer Science and Artificial Intelligence Laboratory, ENGIE Lab CRIGEN, 4 rue Josephine Baker, 93240, Stains, France.

Article Synopsis
  • The paper enhances the junction tree variational autoencoder (JT VAE) by improving its implementation and utilizing its internal feature space for various tasks.
  • It demonstrates that pretraining the JT VAE on a large dataset, specifically the ZINC database, and subsequent optimization with a regression model allows for multitasking capabilities like prediction, generation, and optimization.
  • The study evaluates the model using the QM9 dataset, showing that it outperforms existing models in generating new molecules and optimizing molecular properties while maintaining high precision.
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  • Pectobacterium and Dickeya species are harmful plant pathogens that damage plant tissues by producing enzymes that break down cell walls, but they also employ stealth tactics to manipulate plant responses.
  • These bacteria alter the hormonal balance in host plants, promote modifications to plant cell walls, and stimulate processes that ultimately weaken the plant's defenses, making it more susceptible to disease.
  • SRP populations consist of diverse cells specialized for different functions, allowing them to adapt to various environments and improve their overall survival and virulence during infection.
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Hydroxyapatite (HA) with a stoichiometry composition of Ca(PO)(OH) is widely applied for various biomedical issues, first of all for bone defect substitution, as a catalyst, and as an adsorbent for soil and water purification. The incorporation of foreign ions changes the acid-base relation, microstructure, porosity, and other properties of the HA materials. Here, we report the results of calculations of the density functional theory and analyze the possibility of two foreign ions, CO and Mg, to be co-localized in the HA structure.

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  • In recent years, plant growth-promoting rhizobacteria (PGPR) have gained traction as biofertilizers, prompting the need to discover new beneficial isolates.
  • A new non-sporulating Gram-positive bacterium strain, MG-1, was isolated from potato rhizosphere and characterized genetically, showing optimal growth in specific pH and temperature conditions.
  • MG-1 enhances plant growth, boosts biomass accumulation in various seeds, and mitigates salt stress, suggesting its potential application in agriculture, especially in saline soils.
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This article presents data on electron paramagnetic resonance (EPR) and mass spectrometric analysis of potato tubers, irradiated with gamma rays, in order to examine and identify changes in the molecular composition of organic matter following radiation exposure. The products of the Maillard reaction were compared with the products of intramolecular radiolysis of organic constituents of potatoes. The presence of free radicals was verified using EPR.

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  • Proteins with carbohydrate-binding lectin domains are widely found in plants and play a key role in the complex structure of plant cell walls, which change during development.
  • Researchers conducted a genome-wide search for lectin motifs in maize roots, identifying 306 gene sequences linked to different stages of root cell development.
  • Many identified lectins show high expression levels during root growth and are associated with cell wall metabolism, suggesting their importance in early root formation and development.
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25-Hydroxycholesterol as a Signaling Molecule of the Nervous System.

Biochemistry (Mosc)

June 2022

Laboratory of Biophysics of Synaptic Processes, Kazan Institute of Biochemistry and Biophysics, Federal Research Center "Kazan Scientific Center of Russian Academy of Sciences", Kazan, 420111, Russia.

Cholesterol is an essential component of plasma membrane and precursor of biological active compounds, including hydroxycholesterols (HCs). HCs regulate cellular homeostasis of cholesterol; they can pass across the membrane and vascular barriers and act distantly as para- and endocrine agents. A small amount of 25-hydroxycholesterol (25-HC) is produced in the endoplasmic reticulum of most cells, where it serves as a potent regulator of the synthesis, intracellular transport, and storage of cholesterol.

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E-site drug specificity of the human pathogen ribosome.

Sci Adv

May 2022

Department of Integrated Structural Biology, Institute of Genetics and Molecular and Cellular Biology, University of Strasbourg, Illkirch, France.

Article Synopsis
  • A widespread commensal fungus poses a significant health risk due to its increasing resistance to current antifungal medications, particularly cycloheximide (CHX).
  • The lack of structural information has hampered the understanding of this resistance and the development of new treatment options.
  • Researchers successfully determined the structure of the ribosome and its complexes with inhibitors, revealing a key change in a specific ribosomal protein that accounts for CHX resistance, paving the way for future antifungal drug innovations.
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  • Reciprocal recurrent genomic selection is a strategy designed to enhance hybrid wheat performance by leveraging two base populations.
  • The study developed predictive genomic equations using data from 1,604 wheat crosses, selecting 20 outstanding female lines to kickstart the selection program.
  • Results indicated a significant selection gain in grain yield after excluding two outlier environments, illustrating both the effectiveness of this breeding approach and the importance of refining predictive models.
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Plant susceptibility to pathogens is usually considered from the perspective of the loss of resistance. However, susceptibility cannot be equated with plant passivity since active host cooperation may be required for the pathogen to propagate and cause disease. This cooperation consists of the induction of reactions called susceptible responses that transform a plant from an autonomous biological unit into a component of a pathosystem.

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Background And Aims: Plant diseases caused by Pectobacterium atrosepticum are often accompanied by extensive rot symptoms. In addition, these bacteria are able to interact with host plants without causing disease for long periods, even throughout several host plant generations. There is, to date, no information on the comparative physiology/biochemistry of symptomatic and asymptomatic plant-P.

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The incredible success of crop breeding and agricultural innovation in the last century greatly contributed to the Green Revolution, which significantly increased yields and ensures food security, despite the population explosion. However, new challenges such as rapid climate change, deteriorating soil, and the accumulation of pollutants require much faster responses and more effective solutions that cannot be achieved through traditional breeding. Further prospects for increasing the efficiency of agriculture are undoubtedly associated with the inclusion in the breeding strategy of new knowledge obtained using high-throughput technologies and new tools in the future to ensure the design of new plant genomes and predict the desired phenotype.

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Our study is the first to consider the changes in the entire set of matrix plant cell wall (PCW) polysaccharides in the course of a plant infectious disease. We compared the molecular weight distribution, monosaccharide content, and the epitope distribution of pectic compounds and cross-linking glycans in non-infected potato plants and plants infected with at the initial and advanced stages of plant colonization by the pathogen. To predict the gene products involved in the modification of the PCW polysaccharide skeleton during the infection, the expression profiles of potato and PCW-related genes were analyzed by RNA-Seq along with phylogenetic analysis.

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A series of 1,2,3-triazolyl nucleoside analogues in which 1,2,3-triazol-4-yl-β-d-ribofuranosyl fragments are attached via polymethylene linkers to both nitrogen atoms of the heterocycle moiety (uracil, 6-methyluracil, thymine, quinazoline-2,4-dione, alloxazine) or to the C-5 and -3 atoms of the 6-methyluracil moiety was synthesized. All compounds synthesized were evaluated for antiviral activity against influenza virus A/PR/8/34/(H1N1) and coxsackievirus B3. Antiviral assays revealed three compounds, , , , which showed moderate activity against influenza virus A H1N1 with IC values of 57.

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