523 results match your criteria: "F-91198 Gif-sur-Yvette; Université Paris-Sud[Affiliation]"

Synthesis and Anti-Chagas Activity Profile of a Redox-Active Lead 3-Benzylmenadione Revealed by High-Content Imaging.

ACS Infect Dis

May 2024

UMR7042 CNRS-Unistra-UHA, Laboratoire d'Innovation Moléculaire et Applications (LIMA), Bio(in)organic & Medicinal Chemistry Team, European School of Chemistry, Polymers and Materials (ECPM), 25, rue Becquerel, F-67087 Strasbourg, France.

Chagas disease, or American trypanosomiasis, is a neglected tropical disease which is a top priority target of the World Health Organization. The disease, endemic mainly in Latin America, is caused by the protozoan and has spread around the globe due to human migration. There are multiple transmission routes, including vectorial, congenital, oral, and iatrogenic.

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This study evaluated the potential of isoCoQ-Carbazole, a diheterocyclic analog of isoCA-4, as an anti-tumor agent. To overcome its low aqueous solubility, liposomes were developed as a delivery system for the compound. In vitro experiments showed that loaded liposomes exhibited similar activity to the free form on multiple human tumor cell lines.

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Pulses of South Atlantic water into the tropical North Atlantic since 1825 from coral isotopes.

Sci Adv

December 2023

Institut de Physique du Globe de Paris, UMR 7154, CNRS Paris Sorbonne Paris Cité, Paris, France.

Decadal and multidecadal changes in the meridional overturning circulation may originate from either the subpolar North Atlantic or the Southern Hemisphere. New records of carbon and oxygen isotopes from an eastern Martinique Island (Lesser Antilles) coral reveal irregular, decadal, double-step events of low ∆C and enhanced vertical mixing, high δO and high δC values starting in 1885. Comparison of the new and published ∆C records indicates that the last event (1956-1969) coincides with a widespread, double-step ∆C low of South Atlantic origin from 32°N to 18°S, associated with a major slowdown of the Caribbean Current transport between 1963 and 1969.

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Cells save their energy during nitrogen starvation by selective autophagy of ribosomes and degradation of RNA to ribonucleotides and nucleosides. Nucleosides are hydrolyzed by nucleoside N-ribohydrolases (nucleosidases, NRHs). Subclass I of NRHs preferentially hydrolyzes the purine ribosides while subclass II is more active towards uridine and xanthosine.

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Diurnal and seasonal rhythmicity, entrained by environmental and nutritional cues, is a vital part of all life on Earth operating at every level of organization; from individual cells, to multicellular organisms, whole ecosystems and societies. Redox processes are intrinsic to physiological function and circadian regulation, but how they are integrated with other regulatory processes at the whole-body level is poorly understood. Circadian misalignment triggered by a major stressor (e.

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Combination drug screen targeting glioblastoma core vulnerabilities reveals pharmacological synergisms.

EBioMedicine

September 2023

Aix Marseille Université, Centre National de la Recherche Scientifique (CNRS), Institut National de la Santé et de la Recherche Médicale (INSERM), Institut Paoli Calmettes, Centre de Recherche en Cancérologie de Marseille (CRCM), Marseille, France; Metronomics Global Health Initiative, Marseille 13385, France. Electronic address:

Background: Pharmacological synergisms are an attractive anticancer strategy. However, with more than 5000 approved-drugs and compounds in clinical development, identifying synergistic treatments represents a major challenge.

Methods: High-throughput screening was combined with target deconvolution and functional genomics to reveal targetable vulnerabilities in glioblastoma.

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Engineering of brick and staple components for ordered assembly of synthetic repeat proteins.

J Struct Biol

September 2023

Institute for Integrative Biology of the Cell (I2BC), CEA, CNRS, Université Paris-Saclay, F-91198 Gif-sur-Yvette CEDEX, France. Electronic address:

Synthetic ɑRep repeat proteins are engineered as Brick and Staple protein pairs that together self-assemble into helical filaments. In most cases, the filaments spontaneously form supercrystals. Here, we describe an expanded series of ɑRep Bricks designed to stabilize the interaction between consecutive Bricks, to control the length of the assembled multimers, or to alter the spatial distribution of the Staple on the filaments.

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Using the Noncanonical Metallo-Amino Acid [Cu(II)(2,2'-Bipyridin-5-yl)]-alanine to Study the Structures of Proteins.

J Phys Chem Lett

April 2023

Institute for Integrative Biology of the Cell, Department of Biochemistry, Biophysics and Structural Biology, Université Paris-Saclay, CEA, CNRS UMR 9198, CEA-Saclay, Gif-sur-Yvette F-91198, France.

Genetic code expansion allows modification of the physical and chemical properties of proteins by the site-directed insertion of noncanonical amino acids. Here we exploit this technology for measuring nanometer-scale distances in proteins. (2,2'-Bipyridin-5-yl)alanine was incorporated into the green fluorescent protein (GFP) and used as an anchoring point for Cu(II) to create a spin-label.

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Polyamines such as spermidine and spermine are essential regulators of cell growth, differentiation, maintenance of ion balance and abiotic stress tolerance. Their levels are controlled by the spermidine/spermine N -acetyltransferase (SSAT) via acetylation to promote either their degradation or export outside the cell as shown in mammals. Plant genomes contain at least one gene coding for SSAT (also named NATA for N-AcetylTransferase Activity).

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Article Synopsis
  • The study introduces an artificial cobalt hemoprotein created by inserting cobalt heme into the artificial protein alpha Rep (αRep), which acts as an effective catalyst for hydrogen production and carbon monoxide reduction.
  • This metalloenzyme was analyzed using advanced techniques like MALDI-TOF MS and UV-Visible spectroscopy to understand its structure and the role of surrounding residues in coordinating the cobalt ion.
  • Results showed that embedding the Co(III)-porphyrin complex within the protein's hydrophobic cavity significantly boosted catalytic activity, suggesting further enhancements could be achieved through targeted modifications of the protein's structure.
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Streptomyces are prolific producers of specialized metabolites with applications in medicine and agriculture. These bacteria possess a large linear chromosome genetically compartmentalized: core genes are grouped in the central part, while terminal regions are populated by poorly conserved genes. In exponentially growing cells, chromosome conformation capture unveiled sharp boundaries formed by ribosomal RNA (rrn) operons that segment the chromosome into multiple domains.

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MDSCAN: RMSD-based HDBSCAN clustering of long molecular dynamics.

Bioinformatics

November 2022

Laboratorio de Química Computacional y Teórica (LQCT), Facultad de Química, Universidad de La Habana, La Habana 10400, Cuba.

Motivation: The term clustering designates a comprehensive family of unsupervised learning methods allowing to group similar elements into sets called clusters. Geometrical clustering of molecular dynamics (MD) trajectories is a well-established analysis to gain insights into the conformational behavior of simulated systems. However, popular variants collapse when processing relatively long trajectories because of their quadratic memory or time complexity.

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Heterodimeric complexes incorporating the lipase-like proteins EDS1 with PAD4 or SAG101 are central hubs in plant innate immunity. EDS1 functions encompass signal relay from TIR domain-containing intracellular NLR-type immune receptors (TNLs) towards RPW8-type helper NLRs (RNLs) and, in Arabidopsis thaliana, bolstering of signaling and resistance mediated by cell-surface pattern recognition receptors (PRRs). Increasing evidence points to the activation of EDS1 complexes by small molecule binding.

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The observed global net land carbon sink is captured by current land models. All models agree that atmospheric CO and nitrogen deposition driven gains in carbon stocks are partially offset by climate and land-use and land-cover change (LULCC) losses. However, there is a lack of consensus in the partitioning of the sink between vegetation and soil, where models do not even agree on the direction of change in carbon stocks over the past 60 years.

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Living organisms need to be able to cope with environmental challenges and other stressors and mount adequate responses that are as varied as the spectrum of those challenges. Understanding how the multi-layered biological stress responses become integrated across and between different levels of organization within an organism can provide a different perspective on the nature and inter-relationship of complex systems in health and disease. We here compare two concepts which have been very influential in stress research: Selye's '' and Sies's '' paradigm.

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Article Synopsis
  • The study investigates how the age of the mare impacts the gene expression in equine blastocysts, revealing differences between younger (6-year-old) and older (over 10-year-old) mares.
  • Results showed that while maternal age did not affect embryo recovery rates or size, it did disturb gene expression related to mitochondria and protein metabolism, particularly in the inner cell mass.
  • The findings suggest that maternal aging can significantly impact embryo development and potentially contribute to reduced fertility in older mares, marking an important insight for the equine industry.
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Gambierol inhibits voltage-gated K (K) channels in various excitable and non-excitable cells. The purpose of this work was to study the effects of gambierol on single rat fetal (F19-F20) adrenomedullary cultured chromaffin cells. These excitable cells have different types of K channels and release catecholamines.

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ComFC mediates transport and handling of single-stranded DNA during natural transformation.

Nat Commun

April 2022

Université Paris-Saclay, CEA, Stabilité Génétique Cellules Souches et Radiations, Institut de Biologie François Jacob, F-92260, Fontenay aux Roses, France.

The ComFC protein is essential for natural transformation, a process that plays a major role in the spread of antibiotic resistance genes and virulence factors across bacteria. However, its role remains largely unknown. Here, we show that Helicobacter pylori ComFC is involved in DNA transport through the cell membrane, and is required for the handling of the single-stranded DNA once it is delivered into the cytoplasm.

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Quantum information technology puts stringent demands on the quality of materials and interfaces in the pursuit of increased device coherence. Yet, little is known about the chemical structure and origins of paramagnetic impurities that produce flux/charge noise that causes decoherence of fragile quantum states and impedes the progress toward large-scale quantum computing. Here, we perform high magnetic field electron paramagnetic resonance (HFEPR) and hyperfine multispin spectroscopy on α-AlO, a common substrate for quantum devices.

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RCDPeaks: memory-efficient density peaks clustering of long molecular dynamics.

Bioinformatics

March 2022

Departamento de Química-Física, Laboratorio de Química Computacional y Teórica (LQCT), Facultad de Química, Universidad de La Habana, La Habana 10400, Cuba.

Motivation: Density Peaks is a widely spread clustering algorithm that has been previously applied to Molecular Dynamics (MD) simulations. Its conception of cluster centers as elements displaying both a high density of neighbors and a large distance to other elements of high density, particularly fits the nature of a geometrical converged MD simulation. Despite its theoretical convenience, implementations of Density Peaks carry a quadratic memory complexity that only permits the analysis of relatively short trajectories.

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Many strains are able to establish a Nod factor-independent symbiosis with the leguminous plant by the use of a type III secretion system (T3SS). Recently, an important advance in the understanding of the molecular factors supporting this symbiosis has been achieved by the in silico identification and functional characterization of 27 putative T3SS effectors (T3Es) of ORS3257. In the present study, we experimentally extend this catalog of T3Es by using a multi-omics approach.

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Pesticide risk-assessment guidelines for honeybees (Apis mellifera) generally require determining the acute toxicity of a chemical over the short-term through fix-duration tests. However, potential long-lasting or delayed effects resulting from an acute exposure (e.g.

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In the framework of artificial or synthetic cell development, giant liposomes are common basic structures. Their enclosed membrane allows encapsulating proteins, DNA, reactants, ., while its phospholipid nature allows some exchanges with the surrounding medium.

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