132 results match your criteria: "Dipartimento di Biologia e Biotecnologie "C. Darwin"; Sapienza-Universita di Roma; Roma[Affiliation]"

Reduced RNA turnover as a driver of cellular senescence.

Life Sci Alliance

March 2021

Institut Pasteur, Centre National de la Recherche Scientifique (CNRS) UMR3738, Dpt Biologie du Développement et Cellules Souches, Unité de Régulation Epigénétique, Paris, France

Article Synopsis
  • The buildup of senescent cells contributes to chronic inflammation as we age, and this process is influenced by cytoplasmic double-stranded RNA, similar to the previously known effects of cytoplasmic DNA.
  • Researchers found that various cell types in senescence have high levels of long promoter RNAs and retrotransposon sequences, leading to increased activity of genes responsive to viral double-stranded RNA via the interferon pathway.
  • Evidence shows that lower RNA turnover, possibly due to decreased expression of RNA exosome components, exacerbates senescence markers, with oxidative stress also playing a role in this senescence-like RNA accumulation and persistent inflammation.
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Roots drive oligogalacturonide-induced systemic immunity in tomato.

Plant Cell Environ

January 2021

Department of Soil Microbiology and Symbiotic Systems, Estación Experimental del Zaidín (CSIC), Granada, Spain.

Article Synopsis
  • - Oligogalacturonides (OGs) are fragments of pectin that plants release when they experience damage, like from insects or pathogens, and these fragments act as signals for the plant to activate its defense mechanisms.
  • - Research on tomato plants showed that local responses to OGs are short-lived, while the defensive responses further away in the plant, especially in the roots, are stronger and last longer, even when OGs are applied to the leaves.
  • - The study found that different hormones and secondary metabolites related to defense were produced in response to OGs, particularly in the roots, and confirmed that these responses help the plant resist infection from Botrytis cinerea.
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In recent years, extracellular vesicles (EVs), cell-derived micro and nano-sized structures enclosed in a double-layer membrane, have been in the spotlight for their high potential in diagnostic and therapeutic applications. Indeed, they act as signal mediators between cells and/or tissues through different mechanisms involving their complex cargo and exert a number of biological effects depending upon EVs subtype and cell source. Being produced by almost all cell types, they are found in every biological fluid including milk.

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The freshwater fish species , commonly named the Pacific fat sleeper, is an important food resource in CentralSouth America, yet almost no genetic information on it is available. A cytogenetic analysis of this species was undertaken by standard and molecular techniques (chromosomal mapping of 18S rDNA, 5S rDNA, and telomeric repeats), aiming to describe the karyotype features, verify the presence of sex chromosomes described in congeneric species, and make inferences on chromosome evolution in the genus. The karyotype (2n = 46) is mainly composed of metacentric and submetacentic chromosomes, with nucleolar organizer regions (NORs) localized on the short arms of submetacentric pair 10.

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Article Synopsis
  • The study identifies a specific mutation that results in azoospermia due to defects in spermatogenesis, particularly the absence of meiotic cells in male patients.
  • It highlights the roles of SCAPER and Ssp3 in microtubule dynamics during male meiosis, showing that their absence leads to failure in chromosome segregation and cytokinesis.
  • The findings suggest similarities in meiotic processes between humans and the studied model organism, emphasizing the importance of these proteins in male fertility.
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Trimethylguanosine synthase 1 (TGS1) is a conserved enzyme that mediates formation of the trimethylguanosine cap on several RNAs, including snRNAs and telomerase RNA. Previous studies have shown that TGS1 binds the Survival Motor Neuron (SMN) protein, whose deficiency causes spinal muscular atrophy (SMA). Here, we analyzed the roles of the Drosophila orthologs of the human TGS1 and SMN genes.

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Background: The ribonuclear protein TDP-43 has been implicated in the pathophysiology of amyotrophic lateral sclerosis (ALS), with genetic mutations being linked to the neurological symptoms of the disease. Though alterations in the intracellular distribution of TDP-43 have been observed in skeletal muscles of patients suffering from ALS, it is not clear whether such modifications play an active role in the disease or merely represent an expression of muscle homeostatic mechanisms. Also, the molecular and metabolic pathways regulated by TDP-43 in the skeletal muscle remain largely unknown.

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Molecular Analysis and Chromosome Mapping of Repetitive DNAs in the Green Terror (Cichlidae: Cichlasomatini).

Zebrafish

February 2020

Departamento de Morfologia, Instituto de Biociências Universidade Estadual Paulista, UNESP, Botucatu, Brazil.

Neotropical cichlids include hundreds of species whose taxonomy has benefited of molecular phylogeny and whose karyotype evolution has been related to the amount and distribution of different classes of repetitive sequences. This study provides the first integrative molecular (cytochrome c oxidase subunit 1 and 16S sequences) and cytogenetic analyses of wild samples of the green terror , a cichlid naturally distributed in Ecuador and spread throughout the world as an aquarium pet. Molecular data revealed that sequences of green terror constitute a single monophyletic clade within the genus and allowed species attribution of uncertain samples previously cytogenetically analyzed.

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The gene encodes for the human ATP Citrate Lyase (ACL) ortholog, a metabolic enzyme that from citrate generates glucose-derived Acetyl-CoA, which fuels central biochemical reactions such as the synthesis of fatty acids, cholesterol and acetylcholine, and the acetylation of proteins and histones. We had previously reported that, although loss of ATPCL reduced levels of Acetyl-CoA, unlike its human counterpart, it does not affect global histone acetylation and gene expression, suggesting that its role in histone acetylation is either partially redundant in or compensated by alternative pathways. Here, we describe that depletion of DmATPCL affects spindle organization, cytokinesis, and fusome assembly during male meiosis, revealing an unanticipated role for DmATPCL during spermatogenesis.

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NBS1 interacts with HP1 to ensure genome integrity.

Cell Death Dis

December 2019

Dipartimento di Biologia e Biotecnologie "C. Darwin", Sapienza Università di Roma, Rome, Italy.

Heterochromatin Protein 1 (HP1) and the Mre11-Rad50-Nbs1 (MRN) complex are conserved factors that play crucial role in genome stability and integrity. Despite their involvement in overlapping cellular functions, ranging from chromatin organization, telomere maintenance to DNA replication and repair, a tight functional relationship between HP1 and the MRN complex has never been elucidated. Here we show that the Drosophila HP1a protein binds to the MRN complex through its chromoshadow domain (CSD).

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Background: Polycomb repressive complex 2 (PRC2) is an epigenetic transcriptional repression system, whose catalytic subunit (ENHANCER OF ZESTE HOMOLOG 2, EZH2 in animals) is responsible for trimethylating histone H3 at lysine 27 (H3K27me3). In mammals, gain-of-function mutations as well as overexpression of EZH2 have been associated with several tumors, therefore making this subunit a suitable target for the development of selective inhibitors. Indeed, highly specific small-molecule inhibitors of EZH2 have been reported.

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In eukaryotes, pyridoxal kinase (PDXK) acts in vitamin B salvage pathway to produce pyridoxal 5'-phosphate (PLP), the active form of the vitamin, which is implicated in numerous crucial metabolic reactions. In Drosophila, mutations in the dPdxk gene cause chromosome aberrations (CABs) and increase glucose content in larval hemolymph. Both phenotypes are rescued by the expression of the wild type human PDXK counterpart.

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Article Synopsis
  • PNPO and PDXK work together to create pyridoxal 5'-phosphate (PLP), the active form of vitamin B6, with PDXK phosphorylating various forms of B6 and PNPO oxidizing them into PLP.
  • Research showed that reducing PDXK in Drosophila and human cells affects glucose metabolism and DNA integrity, while silencing the sgll gene, which is the Drosophila equivalent of PNPO, leads to chromosome abnormalities and diabetes-like symptoms.
  • The study indicates that chromosome aberrations in sgll cells are largely caused by harmful effects from high glucose levels, highlighting the importance of maintaining proper PLP levels for glucose balance and DNA health.
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The Varied Role of Efflux Pumps of the MFS Family in the Interplay of Bacteria with Animal and Plant Cells.

Microorganisms

August 2019

Istituto Pasteur Italia, Dipartimento di Biologia e Biotecnologie "C. Darwin", Sapienza Università di Roma, Via dei Sardi 70, 00185 Rome, Italy.

Efflux pumps represent an important and large group of transporter proteins found in all organisms. The importance of efflux pumps resides in their ability to extrude a wide range of antibiotics, resulting in the emergence of multidrug resistance in many bacteria. Besides antibiotics, multidrug efflux pumps can also extrude a large variety of compounds: Bacterial metabolites, plant-produced compounds, quorum-sensing molecules, and virulence factors.

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The Sicilian Wolf: Genetic Identity of a Recently Extinct Insular Population.

Zoolog Sci

June 2019

Laboratories of Physical Anthropology and Ancient DNA, Department of Cultural Heritage, University of Bologna, Ravenna, Italy.

Historically, many local grey wolf () populations have undergone substantial reductions in size or become extinct. Among these, the wolf population once living in Sicily, the largest island in the Mediterranean Sea, was completely eradicated by human activity in the early decades of the 20th century. To gain a better understanding of the genetic identity of the Sicilian wolf, we used techniques for the study of ancient DNA to analyze the mitochondrial (mt) variability of six specimens stored in Italian museums.

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Efflux pumps are membrane protein complexes conserved in all living organisms. Beyond being involved in antibiotic extrusion in several bacteria, efflux pumps are emerging as relevant players in pathogen-host interactions. We have investigated on the possible role of the efflux pump network in Shigella flexneri, the etiological agent of bacillary dysentery.

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Background: Recent genome studies of modern and ancient samples have proposed that Native Americans derive from a subset of the Eurasian gene pool carried to America by an ancestral Beringian population, from which two well-differentiated components originated and subsequently mixed in different proportion during their spread in the Americas. To assess the timing, places of origin and extent of admixture between these components, we performed an analysis of the Y-chromosome haplogroup Q, which is the only Pan-American haplogroup and accounts for virtually all Native American Y chromosomes in Mesoamerica and South America.

Results: Our analyses of 1.

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The pearly razorfish Xyrichtys novacula (Linnaeus, 1758) is a sedentary benthic species distributed in both sides of the Atlantic Ocean and in the Mediterranean Sea. Previous cytogenetic analysis reported different diploid numbers in samples from Italy, Venezuela and Brazil. This research aims to test the hypothesis that samples from American Atlantic coast and Mediterranean Sea belong to the same single evolutionary lineage, characterized by intra-specific chromosome polymorphism.

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Aurora-A is a conserved mitotic kinase overexpressed in many types of cancer. Growing evidence shows that Aurora-A plays a crucial role in DNA damage response (DDR) although this aspect has been less characterized. We isolated a new aur-A mutation, named aur-A, in Drosophila, and we showed that it causes chromosome aberrations (CABs).

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Several studies have shown that RNAi-mediated depletion of splicing factors (SFs) results in mitotic abnormalities. However, it is currently unclear whether these abnormalities reflect defective splicing of specific pre-mRNAs or a direct role of the SFs in mitosis. Here, we show that two highly conserved SFs, Sf3A2 and Prp31, are required for chromosome segregation in both and human cells.

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Rapidly mutating Y-STRs in rapidly expanding populations: Discrimination power of the Yfiler Plus multiplex in northern Africa.

Forensic Sci Int Genet

January 2019

Dipartimento di Biologia e Biotecnologie "C. Darwin", Sapienza Università di Roma, Rome, Italy; Istituto di Biologia e Patologia Molecolari, CNR, Rome, Italy. Electronic address:

The male-specific northern African genetic pool is characterised by a high frequency of the E-M81 haplogroup, which expanded in very recent times (2-3 kiloyears ago). As a consequence of their recent coalescence, E-M81 chromosomes often cannot be completely distinguished on the basis of their Y-STR profiles, unless rapidly-mutating Y-STRs (RM Y-STRs) are analysed. In this study, we used the Yfiler® Plus kit, which includes 7 RM Y-STRs and 20 standard Y-STR, to analyse 477 unrelated males coming from 11 northern African populations sampled from Morocco, Algeria, Libya and Egypt.

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Identification and molecular characterisation of an AMEL-X null allele due to an Alu insertion.

Forensic Sci Int Genet

January 2019

Dipartimento di Biologia e Biotecnologie "C. Darwin", Sapienza Università di Roma, Rome, Italy; Istituto di Biologia e Patologia Molecolari, Consiglio Nazionale delle Ricerche, Rome, Italy. Electronic address:

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Extracellular DAMPs in Plants and Mammals: Immunity, Tissue Damage and Repair.

Trends Immunol

November 2018

The Leslie and Susan Gonda Multidisciplinary Brain Research Center, Bar-Ilan University, Ramat Gan, 5290002, Israel; The Paul Feder Laboratory for Alzheimer's Disease Research, The Mina and Everard Goodman Faculty of Life sciences, Bar-Ilan University, Ramat Gan, 5290002, Israel.

Article Synopsis
  • Innate immune receptors respond to both non-self molecules and damage-associated molecular patterns (DAMPs), playing a crucial role in triggering immune responses.
  • DAMPs lead to complex responses in organisms, particularly in terms of immunity and tissue repair, in contrast to pathogen-associated molecular patterns (PAMPs), which primarily cause inflammation.
  • The study highlights the similarities in DAMP receptors and their mechanisms across different life forms, emphasizing their importance in managing inflammation and tissue repair in both plants and mammals.
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Pyridoxal 5'-phosphate (PLP), the active form of vitamin B6, works as cofactor in numerous enzymatic reactions and it behaves as antioxidant molecule. PLP deficiency has been associated to many human pathologies including cancer and diabetes and the mechanism behind this connection is now becoming clearer. Inadequate intake of this vitamin increases the risk of many cancers; furthermore, PLP deprivation impairs insulin secretion in rats, whereas PLP supplementation prevents diabetic complications and improves gestational diabetes.

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