20 results match your criteria: "Department of Plant Biology and Agro-Environmental and Animal Biotechnology; University of Perugia; Perugia[Affiliation]"

Article Synopsis
  • A genomic database encompassing all eukaryotic species on Earth is crucial for scientific advancements, yet most species lack genomic data.
  • The Earth BioGenome Project (EBP) was initiated in 2018 by global scientists to compile high-quality reference genomes for approximately 1.5 million recognized eukaryotic species.
  • The European Reference Genome Atlas (ERGA) launched a Pilot Project to create a decentralized model for reference genome production by testing it on 98 species, providing valuable insights into scalability, equity, and inclusiveness for genomic projects.
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Article Synopsis
  • The Microbiome Protocols eBook (MPB) connects researchers by providing essential protocols for microbiome experiments and data analysis.
  • The first edition, released in 2020, included 152 well-organized protocols and received positive feedback from the scientific community.
  • Researchers are now encouraged to contribute their own protocols for the upcoming 2nd edition to help further microbiome research.
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Bracken fern (Pteridium spp.) is a highly problematic plant worldwide due to its toxicity in combination with invasive properties on former farmland, in deforested areas and on disturbed natural habitats. The carcinogenic potential of bracken ferns has caused scientific and public concern for six decades.

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How genomics can help biodiversity conservation.

Trends Genet

July 2023

Department of Ecology and Genetics, Uppsala University, Norbyvägen 18D, 75246, Uppsala, Sweden. Electronic address:

The availability of public genomic resources can greatly assist biodiversity assessment, conservation, and restoration efforts by providing evidence for scientifically informed management decisions. Here we survey the main approaches and applications in biodiversity and conservation genomics, considering practical factors, such as cost, time, prerequisite skills, and current shortcomings of applications. Most approaches perform best in combination with reference genomes from the target species or closely related species.

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Management of Rhizosphere Microbiota and Plant Production under Drought Stress: A Comprehensive Review.

Plants (Basel)

September 2022

Escuela de Agronomía, Facultad de Ciencias Agronómicas y de los Alimentos, Pontificia Universidad Católica de Valparaíso, Quillota 2260-000, Chile.

Drought generates a complex scenario worldwide in which agriculture should urgently be reframed from an integrative point of view. It includes the search for new water resources and the use of tolerant crops and genotypes, improved irrigation systems, and other less explored alternatives that are very important, such as biotechnological tools that may increase the water use efficiency. Currently, a large body of evidence highlights the role of specific strains in the main microbial rhizosphere groups (arbuscular mycorrhizal fungi, yeasts, and bacteria) on increasing the drought tolerance of their host plants through diverse plant growth-promoting (PGP) characteristics.

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The era of reference genomes in conservation genomics.

Trends Ecol Evol

March 2022

LOEWE Centre for Translational Biodiversity Genomics (LOEWE-TBG), Georg-Voigt-Str. 14-16, 60325 Frankfurt/Main, Germany; Senckenberg Biodiversity and Climate Research Centre, Georg-Voigt-Str. 14-16, 60325 Frankfurt/Main, Germany; Institute for Insect Biotechnology, Justus-Liebig University Gießen, Heinrich-Buff-Ring 26-32, 35392 Giessen, Germany. Electronic address:

Progress in genome sequencing now enables the large-scale generation of reference genomes. Various international initiatives aim to generate reference genomes representing global biodiversity. These genomes provide unique insights into genomic diversity and architecture, thereby enabling comprehensive analyses of population and functional genomics, and are expected to revolutionize conservation genomics.

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Much of the mitogenome variation observed in fungal lineages seems driven by mobile genetic elements (MGEs), which have invaded their genomes throughout evolution. The variation in the distribution and nucleotide diversity of these elements appears to be the main distinction between different fungal taxa, making them promising candidates for diagnostic purposes. Fungi of the genus display a high variation in MGE content, from MGE-poor ( and species complex) to MGE-rich mitogenomes found in the important cereal pathogens and sensu stricto.

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Reviewing research priorities in weed ecology, evolution and management: a horizon scan.

Weed Res

August 2018

Michael Williams & Associates Pty Ltd Natural resource Management Facilitators and Strategists Sydney NSW Australia.

Weedy plants pose a major threat to food security, biodiversity, ecosystem services and consequently to human health and wellbeing. However, many currently used weed management approaches are increasingly unsustainable. To address this knowledge and practice gap, in June 2014, 35 weed and invasion ecologists, weed scientists, evolutionary biologists and social scientists convened a workshop to explore current and future perspectives and approaches in weed ecology and management.

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Pb low doses induced genotoxicity in Lactuca sativa plants.

Plant Physiol Biochem

March 2017

Department of Biology & GreenUP-CitabUP, Faculty of Sciences, University of Porto, Rua Campo Alegre s/n, 4169-007 Porto, Portugal.

Soil and water contamination by lead (Pb) remains a topic of great concern, particularly regarding crop production. The admissible Pb values in irrigation water in several countries range from ≈0.1 to ≈5 mg L.

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Weed management is a critically important activity on both agricultural and non-agricultural lands, but it is faced with a daunting set of challenges: environmental damage caused by control practices, weed resistance to herbicides, accelerated rates of weed dispersal through global trade, and greater weed impacts due to changes in climate and land use. Broad-scale use of new approaches is needed if weed management is to be successful in the coming era. We examine three approaches likely to prove useful for addressing current and future challenges from weeds: diversifying weed management strategies with multiple complementary tactics, developing crop genotypes for enhanced weed suppression, and tailoring management strategies to better accommodate variability in weed spatial distributions.

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We have recently reported that ozone (O(3)) can inhibit mitochondrial respiration and induce activation of the alternative oxidase (AOX) pathway and in particular AOX1a in tobacco. While O(3) causes mitochondrial H(2)O(2), early leaf nitric oxide (NO) as well as transient ethylene (ET) accumulation, the levels of jasmonic acid and 12-oxo-phytodienoic acid remained unchanged. It was shown that both, NO and ET dependent pathways can induce AOX1a transcription by O(3).

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The causal relationships among ethylene emission, oxidative burst and tissue damage, and the temporal expression patterns of some ethylene biosynthetic and responsive genes, were examined in the Never ripe (Nr) tomato (Lycopersicon esculentum) mutant and its isogenic wild type (cv. Pearson), to investigate the role played by the ethylene receptor LE-ETR3 (NR) in mediating the plant response to ozone (O(3)). Tomato plants were used in a time-course experiment in which they were exposed to acute O(3) fumigation with 200 nl l(-1) O(3) for 4 h.

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Quantification of jasmonic acid by SPME in tomato plants stressed by ozone.

J Agric Food Chem

December 2006

Department of Agricultural and Environmental Science, and Department of Plant Biology and Agro-Environmental and Animal Biotechnology, University of Perugia, Borgo XX Giugno 72, 06121 Perugia, Italy.

Jasmonates are signalling molecules induced in plants as a response to various biotic and/or abiotic stresses. As ozone is known to activate defense responses in plants, we have monitored the concentration of jasmonic acid in tomato leaves during and after an acute exposure to this abiotic elicitor. In this experiment, we observed that the maximum induction of jasmonic acid in O3-fumigated plants occurred 9 h after the end of treatment and the concentration of jasmonic acid in stressed plants increased 13-fold.

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The higher plant mitochondrial electron transport chain contains, in addition to the cytochrome chain, an alternative pathway that terminates with a single homodimeric protein, the alternative oxidase (AOX). We recorded temporary inhibition of cytochrome capacity respiration and activation of AOX pathway capacity in tobacco plants (Nicotiana tabacum L. cv BelW3) fumigated with ozone (O(3)).

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Article Synopsis
  • * Researchers used both morphological and molecular techniques to analyze ECM biodiversity in a Tuber melanosporum plantation, which was not producing truffles.
  • * Two unique ECM morphotypes (ECMm1 and ECMm3) were identified, with ECMm3 linked to a specific Tuber species group and ECMm1 sharing similarities with other fungi, enhancing knowledge about fungal diversity in truffle plantations.
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Biodegradation of the fungicide iprodione by Zygosaccharomyces rouxii strain DBVPG 6399.

J Agric Food Chem

June 2006

Department of Plant Biology and Agro-environmental and Animal Biotechnology, Section of Applied Microbiology, and Department of Agricultural and Environmental Science, University of Perugia, 72, 06121 Perugia, Italy.

Iprodione is a contact fungicide used to control several pathogens such as Botrytis cinerea, Monilia, and Sclerotinia. This paper reports the ability of an iprodione-resistant strain of Zygosaccharomyces rouxii to degrade iprodione at a concentration of 1 mg L(-1). The yeast Z.

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SERK and APOSTART. Candidate genes for apomixis in Poa pratensis.

Plant Physiol

August 2005

Department of Plant Biology and Agro-Environmental and Animal Biotechnology, University of Perugia, 06121 Perugia, Italy.

Seed production generally requires the mating of opposite sex gametes. Apomixis, an asexual mode of reproduction, avoids both meiotic reduction and egg fertilization. The essential feature of apomixis is that an embryo is formed autonomously by parthenogenesis from an unreduced egg of an embryo sac generated through apomeiosis.

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