72,104 results match your criteria: "Department of Chemistry Texas A&M University College Station[Affiliation]"

Article Synopsis
  • The study explores how the peptide substance P (SP) interacts with trimethylamine-oxide (TMAO) using various advanced techniques including cryo-ion mobility-mass spectrometry and molecular dynamics simulations.
  • It finds that TMAO promotes the formation of SP dimers in cold solutions, while urea inhibits this process, indicating a complex interplay between these compounds.
  • Additionally, the research highlights that specific amino acid changes in SP can influence its ability to dimerize, suggesting that the orientation of certain residues affects how well TMAO aids dimerization.
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An oral non-covalent non-peptidic inhibitor of SARS-CoV-2 Mpro ameliorates viral replication and pathogenesis in vivo.

Cell Rep

November 2024

Department of Biochemistry & Biophysics, Texas A&M University, College Station, TX 77840, USA. Electronic address:

Safe, effective, and low-cost oral antiviral therapies are needed to treat those at high risk for developing severe COVID-19. To that end, we performed a high-throughput screen to identify non-peptidic, non-covalent inhibitors of the SARS-CoV-2 main protease (Mpro), an essential enzyme in viral replication. NZ-804 was developed from a screening hit through iterative rounds of structure-guided medicinal chemistry.

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We describe the development of a unified synthetic strategy for the preparation of all known 5/5-spirocyclic spiroindimicin (SPM) alkaloids, namely spiroindimicins B-G. The present synthetic route relies on four fundamental transformations: Grignard-based fragment coupling between halogenated pyrrolemetal and isatin partners, Suzuki coupling to generate a triaryl scaffold encompassing all requisite skeletal atoms of the natural products, Lewis acid-mediated spirocyclization to construct the 5/5-spirocyclic core, and chemoselective lactam reduction. The developed syntheses are step-economic (6-7 steps from commercial materials), scalable, and amenable to analogue synthesis.

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The precise modulation of protein-carbohydrate interactions is critical in glycobiology, where multivalent binding governs key cellular processes. As such, synthetic glycopolymers are useful for probing these interactions. Herein, we developed precision glycopolymers (PGPs) with unambiguous local chemical composition and well-defined global structure and systematically evaluated the effect of polymer length, hydrophobicity, and backbone hybridization as well as glycan density and identity on the binding to both mammalian and plant lectins.

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This article presents a study of the dynamics of -alkyl cyanides (CHCN with = 1-5) in the 0-450 cm spectral region as a function of alkyl chain length. The spectra were measured using femtosecond optical Kerr effect (OKE) spectroscopy. The OKE spectra are characterized by a broad band in the 0-150 cm region arising mainly from intermolecular modes and by narrow bands in the 150-450 cm region arising from intramolecular modes.

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Aqueous zinc metal batteries (AZMBs) are promising candidates for grid-scale energy storage due to their low cost and high safety. However, the poor stability and the unfavorable freezing point of aqueous electrolytes hinder their actual application. Herein, a ternary salts-based high-entropy electrolyte (HEE) composed of ZnNaLi(ClO) ⋅ 7HO is proposed to address the above issues.

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Radiotherapy (XRT) is often utilized to improve the immune checkpoint blockade response in cancer management. Such combination treatment can enhance the abscopal effect, facilitating a prolonged and durable systemic response. However, despite intense research efforts, only a minority of patients respond to this approach, and novel strategies to increase the abscopal effect are urgently needed.

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Self-Assembly of Microstructured Protein Coatings with Programmable Functionality for Fluorescent Biosensors.

ACS Appl Mater Interfaces

November 2024

Tim Taylor Department of Chemical Engineering, Kansas State University, 1701A Platt Street, Manhattan, Kansas 66506, United States.

Proteins, as genetically programmable functional macromolecules, hold immense potential as biocompatible self-assembling building blocks, owing to their versatility in building coating materials and programming their functionality genetically. In this study, we demonstrate a modular self-assembly of protein coatings that are genetically programmable for a biosensor application. We designed and produced recombinant fusion protein building blocks to form microstructured coatings on diverse substrates, such as glass or polymers, through thermally triggered liquid-liquid phase separation and an orthogonal high-affinity coiled-coil interaction.

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Nexus of Soil Microbiomes, Genes, Classes of Carbon Substrates, and Biotransformation of Fluorotelomer-Based Precursors.

Environ Sci Technol

November 2024

Zachry Department of Civil and Environmental Engineering, Texas A&M University, College Station, Texas 77843, United States.

The unpredictable biodegradation of fluorotelomer (FT)-based per- and polyfluoroalkyl substances (PFAS) causes complicated risk management of PFAS-impacted sites. Here, we have successfully used redundancy analysis to link FT-based precursor biodegradation to key microbes and genes of soil microbiomes shaped by different classes of carbon sources: alcohols (C2-C4), alkanes (C6 and C8), an aromatic compound (phenol), or a hydrocarbon surfactant (cocamidopropyl betaine [CPB]). All the enrichments defluorinated fluorotelomer alcohols (:2 FtOH; = 4, 6, 8) effectively and grew on 6:2 fluorotelomer sulfonate (6:2 FtS) as a sulfur source.

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Long-Axial-Range Double-Helix Point Spread Functions for 3D Volumetric Super-Resolution Imaging.

J Phys Chem B

November 2024

Department of Chemistry, Rice University, 6100 Main Street, Houston, Texas 77005, United States.

Article Synopsis
  • Single-molecule localization microscopy (SMLM) enables high-resolution imaging beyond traditional light diffraction limits, particularly in 3D using engineered point spread functions (PSFs).
  • The study addresses challenges in super-resolving structures in thick samples by introducing long-axial-range double-helix (DH)-PSFs, which streamline the imaging and analysis workflows.
  • Experimentation shows that these DH-PSFs, combined with deep learning techniques, enhance image resolution and speed, achieving effective 3D imaging without the need for complex slicing or postprocessing.
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FRESH 3D printing of zoledronic acid-loaded chitosan/alginate/hydroxyapatite composite thermosensitive hydrogel for promoting bone regeneration.

Int J Pharm

December 2024

Division of Molecular Pharmaceutics and Drug Delivery, College of Pharmacy, The University of Texas at Austin, Austin, TX 78712, USA; Pharmaceutical Engineering and 3D Printing (PharmE3D) Lab, Department of Pharmaceutics and Drug Delivery, School of Pharmacy, The University of Mississippi, University, MS 38677, USA. Electronic address:

The aim of this study was to develop a composite thermosensitive hydrogel for bone regeneration applications. This hydrogel consisted of chitosan, alginate and hydroxyapatite, and was loaded with zoledronic acid as a model drug. The feasibility of three-dimensional (3D) printing of the thermosensitive hydrogel using the extrusion based technique was investigated.

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Clinical outcomes of early-stage triple-negative breast cancer after neoadjuvant chemotherapy according to HER2-low status☆.

ESMO Open

November 2024

Department of Medical Oncology, Dana-Farber Cancer Institute, Boston, USA; Breast Oncology Program, Dana-Farber Brigham Cancer Center, Boston, USA; Harvard Medical School, Boston, USA. Electronic address:

Background: The impact of human epidermal growth factor receptor 2 (HER2) expression determined by immunohistochemistry (IHC) on outcomes in early-stage triple-negative breast cancer (eTNBC) is unclear. Using a large, multi-institutional cohort, we evaluated outcomes by HER2 IHC status in patients with eTNBC who received neoadjuvant therapy (NAT).

Patients And Methods: Patients with stage I-III TNBC who received NAT and underwent surgery from January 2016 to June 2019 were identified from three databases.

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In vitro and silico activity of piperlongumine against azole-susceptible/resistant Aspergillus fumigatus and terbinafine-susceptible/resistant Trichophyton species.

Diagn Microbiol Infect Dis

January 2025

Invasive Fungi Research Center, Communicable Diseases Institute, Mazandaran University of Medical Sciences, Sari, Iran; Department of Molecular Microbiology & Immunology/South Texas Center for Emerging Infectious Diseases, The University of Texas at San Antonio, San Antonio, TX, USA.

In recent years, the widespread emergence of drug resistance in yeasts and filamentous fungi to existing antifungal armamentariums has become a severe threat to global health. There is also concern regarding increased rates of azole resistance in Aspergillus fumigatus and Terbinafine resistance in Trichophyton species. To overcome this concern of resistance to regular therapies, new antifungal drugs with novel and effective mechanisms are crucially needed.

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Coinfection of (Mtb) and human immunodeficiency virus-1 (HIV) is a significant public health concern. Treatment is challenging due to prolonged duration of therapy and drug interactions between antiretroviral therapy (ART) and anti-TB drugs. Noniron gallium -tetraphenyl porphyrin (GaTP), a heme mimetic, has shown broad antimicrobial activity.

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A Bond-Based Machine Learning Model for Molecular Polarizabilities and A Priori Raman Spectra.

J Chem Theory Comput

November 2024

Department of Chemistry, Rice University, Houston, Texas 77005, United States.

The use of machine learning (ML) algorithms in molecular simulations has become commonplace in recent years. There now exists, for instance, a multitude of ML force field algorithms that have enabled simulations approaching level accuracy at time scales and system sizes that significantly exceed what is otherwise possible with traditional methods. Far fewer algorithms exist for predicting rotationally equivariant, tensorial properties such as the electric polarizability.

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Aziridine Group Transfer via Transient -Aziridinyl Radicals.

J Am Chem Soc

November 2024

Department of Chemistry, Texas A&M University, College Station, Texas 77843, United States.

Aziridines are the smallest nitrogen-containing heterocycles. Strain-enhanced electrophilicity renders aziridines useful synthetic intermediates and gives rise to biological activity. Classical aziridine syntheses─based on either [2 + 1] cycloadditions or intramolecular substitution chemistry─assemble aziridines from acyclic precursors.

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Treatment of diseases of oxidative stress through activation of the antioxidant nuclear factor E2-related factor 2 (NRF2) is limited by systemic side effects. We chemically functionalize the NRF2 activator monomethyl fumarate to require Baeyer-Villiger oxidation for release of the active drug at sites of oxidative stress. This prodrug reverses chronic pain in mice with reduced side effects and could be applied to other disorders of oxidative stress.

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Poly(ADP-ribose) polymerase 1 (PARP1) is one of the first responders to DNA damage and plays crucial roles in recruiting DNA repair proteins through its activity - poly(ADP-ribosyl)ation (PARylation). The enrichment of DNA repair proteins at sites of DNA damage has been described as the formation of a biomolecular condensate. However, it remains unclear how exactly PARP1 and PARylation contribute to the formation and organization of DNA repair condensates.

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Article Synopsis
  • RNA oxidation, particularly the formation of 8-oxo-7,8-dihydroguanosine (8-oxo-rG), serves as a key indicator of oxidative stress in cells.
  • Polynucleotide phosphorylase (PNPase) helps protect cells from oxidative stress by recognizing and degrading RNA containing 8-oxo-rG, but how 8-oxo-rG affects this process was previously unclear.
  • This study finds that 8-oxo-rG causes PNPase to stall during RNA degradation, particularly due to a crucial residue (Arg399), influencing bacterial survival under stress conditions.
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Dynamic multilayered control of mA RNA demethylase activity.

Proc Natl Acad Sci U S A

November 2024

Division of Hematology and Medical Oncology, Mays Cancer Center, University of Texas Health Science Center San Antonio, San Antonio, TX 78229.

Article Synopsis
  • - RNA can be chemically modified through methylation, particularly at the N6-methyladenosine (mA) site on mRNA, which is regulated by the methyltransferase complex and removed by demethylases FTO and ALKBH5.
  • - The outcome of mA-marked mRNA can either lead to its degradation or stabilization/translation, influenced largely by its interaction with specific proteins known as YTH domain-containing proteins.
  • - New insights show that factors like metabolism and posttranslational modifications can affect the functioning and location of FTO and ALKBH5, indicating that mA methylation is a dynamic process that warrants further exploration in cancer and other health conditions.
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Chronic diseases, including diabetes, cardiovascular diseases, and microvascular complications, contribute significantly to global morbidity and mortality. Current monitoring tools such as glucometers and continuous glucose monitors only measure one analyte; multiplexing technologies offer a promising approach for monitoring multiple biomarkers, enabling the management of comorbidities and providing more comprehensive disease insights. In this work, we describe a miniaturized optical "barcode" sensor with high biocompatibility for the continuous monitoring of glucose and oxygen.

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Graphene-based gel electromembrane extraction coupled with modified screen-printed carbon electrode for detecting streptomycin in honey samples: Greener strategy for food analysis.

Talanta

October 2023

Department of Chemistry, Faculty of Science, Chulalongkorn University, Phayathai Road, Pathumwan, Bangkok 10330, Thailand; Electrochemistry and Optical Spectroscopy Center of Excellence, Department of Chemistry, Faculty of Science, Chulalongkorn University, Phayathai Road, Pathumwan, Bangkok 10330, Thailand. Electronic address:

This paper presents a greener methodology for the first time to determine streptomycin in honey based on the modification of gel in the gel electromembrane extraction (G-EME) technique using exfoliated graphene (EG). Differential pulse voltammetry (DPV) with a modified screen-printed carbon electrode was used as a detection technique. The EG was prepared by applying an electrochemical exfoliation of pencil graphite as an environmentally friendly and simple method.

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Cyclodextrin complexation has a potential to modulate the physicochemical properties of peptide drugs. The ability of peptides to form an inclusion complex can be influenced by factors such as size, amino acid sequence of peptide, and the size and charge of the cyclodextrin cavity. In this study, the inclusion complexes of the cyclic peptide drug lanreotide acetate with two common β-cyclodextrin derivatives, Sulfobutyl ether β-CD (SBEβ-CD) and hydroxypropyl β-CD (HPβ-CD) were investigated.

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Urea-Loaded PLGA Microspheres as Chemotaxis Stimulants for Helicobacter pylori.

Biotechnol Bioeng

February 2025

Artie McFerrin Department of Chemical Engineering, Texas A&M University, College Station, Texas, USA.

Helicobacter pylori cells undergo chemotaxis toward several small molecules, called chemo-attractants, including urea produced by the epithelial cells of the stomach. The biophysical mechanisms of chemotaxis are not well understood in H. pylori.

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The optimal approach towards managing serum potassium (sK) and hemodialysate potassium concentrations is uncertain. To study this, adults receiving hemodialysis for three months or more with hyperkalemia (pre-dialysis sK 5.1-6.

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