196 results match your criteria: "D.O.Ott Research Institute of Obstetrics[Affiliation]"

Spinal muscular atrophy (SMA) is a severe neuromuscular disorder that currently has an approved treatment for all forms of the disease. Previously, biomarkers were primarily used for diagnostic purposes, such as detecting the presence of the disease or determining a specific clinical type of SMA. Currently, with the availability of therapy, biomarkers have become more valuable due to their potential for prognostic, predictive, and pharmacodynamic applications.

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Maternal hyperhomocysteinemia (HHcy) is a risk factor for intrauterine growth restriction presumably caused by a decrease in the placental transport of nutrients. We investigated the effect of experimental HHcy induced by daily methionine administration to pregnant rats on the free amino acid levels in the maternal and fetal blood, as well as on morphological and biochemical parameters associated with the amino acid transport through the placenta. HHcy caused an increase in the levels of most free amino acids in the maternal blood on gestational day 20, while the levels of some amino acids in the fetal blood were decreased.

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Hypophosphatasia (HPP) is a rare inherited disorder characterized by the decreased activity of tissue-nonspecific alkaline phosphatase (TNSALP), caused by mutations in the gene. The aim of this study was to conduct differential diagnostics in HPP patients using whole-exome sequencing (WES). The medical records of HPP patients and the genetic testing of the gene were reviewed.

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Article Synopsis
  • Population allele frequency is essential for understanding genetic variants in medicine, and large databases like gnomAD serve as references.
  • Variances in rare allele frequencies between populations suggest that local data can be more informative than global averages; many regions, including Russia, lack comprehensive genetic studies.
  • The RUSeq project created a large genetic variant reference set from 7,452 exome samples in Moscow and St. Petersburg, revealing significant genetic diversity and identifying notable pathogenic variants specific to Russia.
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  • - The study investigates the effects of decaffeinated green tea extract (GTE) and two ammonium salts (ACL and ACR) on physical performance in a rat swimming model, analyzing various biological and performance metrics.
  • - The GTE + ACR combination showed the most significant improvements in swimming duration and lower lactate levels compared to the negative control group, indicating enhanced endurance.
  • - While GTE helps in body recovery and immune response, ammonium carbonate specifically boosts physical performance. However, combining GTE with ammonium salts does not yield a clearly beneficial effect.
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  • * A case study reported an incidental finding of BS through routine DNA testing in breast cancer patients, revealing a woman who appeared healthy for 38 years before her breast cancer diagnosis.
  • * The woman's mild BS symptoms were confirmed through genetic testing, emphasizing the need for including BLM in gene panels for cancer-related DNA testing to identify undiagnosed patients.
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Major Causes of Conflicting Interpretations of Variant Pathogenicity in Rare Disease: A Systematic Analysis.

J Pers Med

August 2024

Department of Genomic Medicine, D.O. Ott Research Institute of Obstetrics, Gynaecology, and Reproductology, Mendeleevskaya Line 3, 199034 St. Petersburg, Russia.

Article Synopsis
  • * A study using ClinVar data found that 5.7% of genetic variants have conflicting interpretations, mainly among variants of uncertain significance (VUS), affecting the diagnosis of rare diseases.
  • * The research highlights that genes with high rates of conflicting interpretations are often associated with serious conditions like cardiac disorders and suggests that consistent interpretation rules and better reporting of variant evidence could improve diagnosis accuracy.
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  • Over the past 20 years, genome-wide association studies (GWAS) have explored the genetic basis of complex human traits, but a comprehensive analysis of variant-level properties influencing the replication of these associations has been lacking in biobank studies.
  • A comparison of GWAS summary statistics from the UK Biobank and FinnGen identified 37,148 index variants linked to complex traits, with only 9.5% of these variants being shared between the two cohorts; a significant number (9230 loci) did not replicate.
  • The study found that non-replicated variants tend to be rarer and exhibit lower effect sizes, while variants identified only in meta-analysis were more common but still had low effects, underscoring the challenges
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Background: The most common cause of hyperandrogenism in women is polycystic ovary syndrome (PCOS), the prevalence of which among women of reproductive age ranges from 8.0 to 21%. The clinical manifestations of PCOS are diverse, and the degree of metabolic and hormonal disorders depends on the PCOS phenotype.

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Dynamics in cortisol levels in Danio rerio fish under the influence of a synthetic analog of kisspeptin 1.

Biomed Khim

June 2024

Anichkov Department of Neuropharmacology, Institute of Experimental Medicine, St. Petersburg, Russia; D.O. Ott Research Institute of Obstetrics, Gynecology and Reproductology, St. Petersburg, Russia.

The effect of a synthetic analog of kisspeptin 1, a peptide involved in the regulation of the hypothalamicpituitary- gonadal (HPG) stress axis, on the cortisol level of Danio rerio fish was investigated. Kisspeptin 1 was administered at doses of 2 μg/kg and 8 μg/kg followed by resting for 1 h and 4 h. We found that kisspeptin at doses of 2 μg/kg and 8 μg/kg increased cortisol levels, with a significant spike in cortisol levels at 1 h post-injection.

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  • Preimplantation genetic testing for aneuploidies (PGT-A) is commonly used in assisted reproduction, but surprisingly, it doesn't significantly enhance clinical outcomes due to discrepancies between PGT-A results and the actual chromosomal makeup of blastocysts.
  • A study analyzed 23 blastocysts from 17 couples, where PGT-A revealed chromosomal imbalances, by re-biopsying the trophectoderm (TE) and separately examining the inner cell mass (ICM).
  • Out of the 23 cases, only 8 had consistent PGT-A results with re-biopsy findings, while 4 showed partial discordance, indicating the complexity of accurately assessing chromosomal status in embryos.
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Background: Despite enormous advances in diabetes treatment, women with type 1 diabetes mellitus (DM) still experience delayed menarche, menstrual irregularities, fewer pregnancies, and a higher rate of stillbirths compared to women without the disease. Due to the fact that type 1 DM occurs at a young age, the preservation of reproductive health is one of the most important goals of treatment.

Aims: The aim of this study was to evaluate the relationship between different glycemic profiles and changes in the pro-oxidant-antioxidant balance and ovarian follicular apparatus in reproductive-age patients with type 1 DM.

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Osteogenesis imperfecta (OI) is a group of inherited disorders of connective tissue that cause significant deformities and fragility in bones. Most cases of OI are associated with pathogenic variants in collagen type I genes and are characterized by pronounced polymorphisms in clinical manifestations and the absence of clear phenotype-genotype correlation. The objective of this study was to conduct a comprehensive molecular-genetic and clinical analysis to verify the diagnosis of OI in six Russian patients with genetic variants in the and genes.

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  • The study investigates how humans adapt to extreme environmental conditions, focusing on high altitude mountaineers facing low oxygen levels (hypoxia).
  • Researchers analyzed the genetic makeup of 22 elite climbers and discovered two significant genetic variants associated with hypoxic adaptation, which may lead to respiratory issues.
  • The findings suggest that certain genetic losses in function could play a crucial role in enabling adaptation to harsh conditions, aligning with previous research on human adaptation.
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Background: Hypertrophic cardiomyopathy is the most frequent autosomal dominant disease, yet due to genetic heterogeneity, incomplete penetrance, and phenotype variability, the prognosis of the disease course in pathogenic variant carriers remains an issue. Identifying common patterns among the effects of different genetic variants is important.

Methods: We investigated the cause of familial hypertrophic cardiomyopathy (HCM) in a family with two patients suffering from a particularly severe disease.

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Background: Potocki-Lupski syndrome (PTLS, OMIM # 610883) is a rare genetic developmental disorder resulting from a partial heterozygous microduplication at chromosome 17p11.2. The condition is characterized by a wide variability of clinical expression, which can make its clinical and molecular diagnosis challenging.

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Maternal hyperhomocysteinemia (HCY) induced by genetic defects in methionine cycle enzymes or vitamin imbalance is known to be a pathologic factor that can impair embryonal brain development and cause long-term consequences in the postnatal brain development as well as changes in the expression of neuronal genes. Studies of the gene expression on this model requires the selection of optimal housekeeping genes. This work aimed to analyze the expression stability of housekeeping genes in offspring brain.

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Ganglioside-monosialic acid (GM1) gangliosidosis (ICD-10: E75.1; OMIM: 230500, 230600, 230650) is a rare autosomal recessive hereditary disease, lysosomal storage disorder caused by mutations in the gene that lead to the absence or insufficiency of β-galactosidase. In this study, we report a case of a Russian family with a history of GM1 gangliosidosis.

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Assessment of Nuclear Gem Quantity for Evaluating the Efficacy of Antisense Oligonucleotides in Spinal Muscular Atrophy Cells.

Methods Protoc

January 2024

Department of Genomic Medicine Named after V.S. Baranov, D.O. Ott Research Institute of Obstetrics, Gynecology and Reproductology, Mendeleevskaya Line 3, 199034 Saint-Petersburg, Russia.

Spinal muscular atrophy is a neuromuscular disorder caused by mutations in both copies of the survival motor neuron gene 1 (), which lead to reduction in the production of the SMN protein. Currently, there are several therapies that have been approved for SMA, with many more undergoing active research. While various biomarkers have been proposed for assessing the effectiveness of SMA treatment, a universally accepted one still has not been identified.

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Establishment of a Pilot Newborn Screening Program for Spinal Muscular Atrophy in Saint Petersburg.

Int J Neonatal Screen

January 2024

Department of Genomic Medicine Named after V.S. Baranov, D.O. Ott Research Institute of Obstetrics, Gynecology and Reproductology, Mendeleevskaya Line 3, 199034 Saint Petersburg, Russia.

Spinal muscular atrophy 5q (SMA) is one of the most common neuromuscular inherited diseases and is the most common genetic cause of infant mortality. SMA is associated with homozygous deletion of exon 7 in the gene. Recently developed drugs can improve the motor functions of infants with SMA when they are treated in the pre-symptomatic stage.

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Patterns of meiotic chromosome segregation were analyzed in cleavage stage and blastocyst stage human embryos from couples with autosomal reciprocal translocations (ART). The influence of quadrivalent asymmetry degree, the presence of terminal breakpoints, and the involvement of acrocentric chromosomes in the rearrangement were analyzed to evaluate their contribution to the formation of non-viable embryos with significant chromosomal imbalance due to pathological segregation patterns and to assess the selection of human embryos by the blastocyst stage. A selection of viable embryos resulting from alternate and adjacent-1 segregation and a significant reduction in the detection frequency of the 3 : 1 segregation pattern were observed in human embryos at the blastocyst stage.

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Article Synopsis
  • Next-generation sequencing (NGS) has transformed rare disease diagnostics, yet the diagnosis rate is still lower than anticipated despite using whole exome and genome sequencing.
  • * Challenges in NGS data analysis include issues with the reference genome quality, coverage bias, and accuracy in detecting variants, especially in complex genomic regions.
  • * The paper emphasizes the difficulties in annotating and interpreting genetic variants, particularly for coding and non-coding regions, while pointing towards future research to improve the effectiveness of NGS in diagnosing diseases.*
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  • - Male infertility, particularly linked to poor semen quality, is found in roughly 50% of infertile couples, with specific CFTR gene variants being common causes of azoospermia.
  • - This study analyzed the allele frequency of 12 CFTR variants in fertile and infertile men across different regions of Russia, using data from a CF patient registry and local biocollections.
  • - Findings revealed significant regional differences in CFTR variant frequencies, confirming that certain variants like F508del and CFTRdele2,3(21kb) are more prevalent in infertile patients compared to healthy individuals, highlighting the need for genetic monitoring in Russian populations.
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bioGWAS: A Simple and Flexible Tool for Simulating GWAS Datasets.

Biology (Basel)

December 2023

Department of Genomic Medicine, D.O. Ott Research Institute of Obstetrics, Gynaecology, and Reproductology, 199034 St. Petersburg, Russia.

Article Synopsis
  • Genome-wide association studies (GWAS) help identify genetic factors related to complex human traits and uncover biological processes linked to these traits.* -
  • The bioGWAS tool was developed to simulate genotypes, phenotypes, and GWAS summary statistics, making it easier to generate results based on specific genetic variants or pathways.* -
  • bioGWAS can recreate complete GWAS datasets and be used to evaluate tools for gene set enrichment analysis, providing valuable resources for improving GWAS data analysis methods.*
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Preeclampsia is a disorder that can occur during pregnancy and is one of the leading causes of death among pregnant women. This disorder occurs after the 20th week of pregnancy and is characterized by arterial hypertension, proteinuria, fetoplacental, and multiple organ dysfunctions. Despite the long history of studying preeclampsia, its etiology and pathogenesis remain poorly understood, and therapy is symptomatic.

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