Genome-wide association mapping for component traits of drought tolerance in dry beans (Phaseolus vulgaris L.).

Understanding the genetic basis of traits of economic importance under drought stressed and well-watered conditions is important in enhancing genetic gains in dry beans (Phaseolus vulgaris L.). This research aims to: (i) identify markers associated with agronomic and physiological traits for drought tolerance and (ii) identify drought-related putative candidate genes within the mapped genomic regions.

Multinutrient Biofortification of Maize ( L.) in Africa: Current Status, Opportunities and Limitations.

Macro and micronutrient deficiencies pose serious health challenges globally, with the largest impact in developing regions such as subSaharan Africa (SSA), Latin America and South Asia. Maize is a good source of calories but contains low concentrations of essential nutrients. Major limiting nutrients in maize-based diets are essential amino acids such as lysine and tryptophan, and micronutrients such as vitamin A, zinc (Zn) and iron (Fe).

Farmers' perceptions of navy bean (Phaseolus vulgaris L.) production constraints, preferred traits and farming systems and their implications on bean breeding: a case study from South East Lowveld region of Zimbabwe.

Background: Navy bean is an important legume crop in Zimbabwe. Although its production in Zimbabwe is limited by multiple constraints including biotic, abiotic and socio-economic, there is no documented evidence. Thus, this study aimed at identifying farmers' production constraints, preferred traits and cultivars of navy bean, and strategies used to mitigate some of these constraints.

Wheat heat tolerance is impaired by heightened deletions in the distal end of 4AL chromosomal arm.

Heat stress (HS) causes substantial damages to worldwide crop production. As a cool season crop, wheat (Triticum aestivum) is sensitive to HS-induced damages. To support the genetic improvement of wheat HS tolerance (HST), we conducted fine mapping of TaHST1, a locus required for maintaining wheat vegetative and reproductive growth under elevated temperatures.

Fall-armyworm invasion, control practices and resistance breeding in Sub-Saharan Africa.

Fall armyworm [ (J.E. Smith); FAW] invasion has exacerbated maize ( L.

Line × tester analysis of maize grain yield under acid and non-acid soil conditions.

Soil acidity has received less attention than other biophysical stresses such as drought and low N, despite accounting for a considerable reduction in maize ( L.) productivity in many parts of southern Africa. The line × tester mating design was used to determine the general combining ability (GCA) for grain yield of 14 maize inbred lines and the specific combining ability (SCA) of their corresponding crosses.

RNA Sequencing-Associated Study Identifies as Positively Regulating the Establishment of Symbiosis in Soybean.

In soybean ()-rhizobium interactions, the type III secretion system (T3SS) of rhizobium plays a key role in regulating host specificity. However, the lack of information on the role of T3SS in signaling networks limits our understanding of symbiosis. Here, we conducted an RNA sequencing analysis of three soybean chromosome segment substituted lines, one female parent and two derived lines with different chromosome-substituted segments of wild soybean and opposite nodulation patterns.

QTL and candidate genes associated with leaf anion concentrations in response to phosphate supply in Arabidopsis thaliana.

Background: Phosphorus is often present naturally in the soil as inorganic phosphate, Pi, which bio-availability is limited in many ecosystems due to low soil solubility and mobility. Plants respond to low Pi with a Pi Starvation Response, involving Pi sensing and long-distance signalling. There is extensive cross-talk between Pi homeostasis mechanisms and the homeostasis mechanism for other anions in response to Pi availability.

QTL analysis of nodule traits and the identification of loci interacting with the type III secretion system in soybean.

Symbiotic nitrogen fixation is the main source of nitrogen for soybean growth. Since the genotypes of rhizobia and soybean germplasms vary, the nitrogen-fixing ability of soybean after inoculation also varies. A few studies have reported that quantitative trait loci (QTLs) control biological nitrogen fixation traits, even soybean which is an important crop.

Exogenous Application of Phytohormones Promotes Growth and Regulates Expression of Wood Formation-Related Genes in × .

Although phytohormones are known to be important signal molecules involved in wood formation, their roles are still largely unclear. Here, × seedlings were treated with different concentrations of exogenous phytohormones, indole-3-acetic acid (IAA), gibberellin (GA₃), and brassinosteroid (BR), and the effects of phytohormones on growth were investigated. Next, 27 genes with known roles in wood formation were selected for qPCR analysis to determine tissue-specificity and timing of responses to phytohormone treatments.

Characterisation of the complete chloroplast genome of the common bean, L.

Common bean ( L.) is the most important grain legume in the human diet and has a role in sustainable agriculture. In this study, we obtained the complete chloroplast genome sequence of common bean using BGISEQ-500 sequencing.

A High-Density Consensus Map of Common Wheat Integrating Four Mapping Populations Scanned by the 90K SNP Array.

A high-density consensus map is a powerful tool for gene mapping, cloning and molecular marker-assisted selection in wheat breeding. The objective of this study was to construct a high-density, single nucleotide polymorphism (SNP)-based consensus map of common wheat ( L.) by integrating genetic maps from four recombinant inbred line populations.

SNP-SNP Interaction Analysis on Soybean Oil Content under Multi-Environments.

Soybean oil content is one of main quality traits. In this study, we used the multifactor dimensionality reduction (MDR) method and a soybean high-density genetic map including 5,308 markers to identify stable single nucleotide polymorphism (SNP)-SNP interactions controlling oil content in soybean across 23 environments. In total, 36,442,756 SNP-SNP interaction pairs were detected, 1865 of all interaction pairs associated with soybean oil content were identified under multiple environments by the Bonferroni correction with p <3.

Corrigendum: Digital Gene Expression Analysis of Populus simonii × P. nigra Pollen Germination and Tube Growth.

[This corrects the article on p. 825 in vol. 7, PMID: 27379121.

Digital Gene Expression Analysis of Populus simonii × P. nigra Pollen Germination and Tube Growth.

Pollen tubes are an ideal model for the study of cell growth and morphogenesis because of their extreme elongation without cell division; however, the genetic basis of pollen germination and tube growth remains largely unknown. Using the Illumina/Solexa digital gene expression system, we identified 13,017 genes (representing 28.3% of the unigenes on the reference genes) at three stages, including mature pollen, hydrated pollen, and pollen tubes of Populus simonii × P.

Use of microsatellite markers for the assessment of bambara groundnut breeding system and varietal purity before genome sequencing.

Maximizing the research output from a limited investment is often the major challenge for minor and underutilized crops. However, such crops may be tolerant to biotic and abiotic stresses and are adapted to local, marginal, and low-input environments. Their development through breeding will provide an important resource for future agricultural system resilience and diversification in the context of changing climates and the need to achieve food security.

Transcriptome profiling and digital gene expression by deep sequencing in early somatic embryogenesis of endangered medicinal Eleutherococcus senticosus Maxim.

Somatic embryogenesis (SE) has been studied as a model system to understand molecular events in physiology, biochemistry, and cytology during plant embryo development. In particular, it is exceedingly difficult to access the morphological and early regulatory events in zygotic embryos. To understand the molecular mechanisms regulating early SE in Eleutherococcus senticosus Maxim.

Cytogenetic and molecular identification of small-segment chromosome translocation lines from wheat-rye substitution lines to create wheat germplasm with beneficial traits.

Intergeneric crop plant hybrid lines with small-segment chromosome translocations are very useful in plant genetic research and breeding. In this study, to create small-segment chromosome translocations with beneficial agronomic characters, the progeny of wheat-rye substitution lines 5R/5A and 6R/6A were selected from generations F to F for rye-specific characteristics. A PCR primer and specific simple sequence repeat marker for rye were used in F populations to detect rye chromatin and to amplify a specific chromosome band in six translocation lines (06-6-5, 06-6-6, 06-6-9, 6-26-1, 7-23, and 7-33).

Detection of Variants of Wheat Stem Rust Race Ug99 (Puccinia graminis f. sp. tritici) in Zimbabwe and Mozambique.

The migration of Ug99 variants of Puccinia graminis f. sp. tritici is of concern to global wheat production (1).

Quality differences between NILs of wheat variety Long 97-586 possessing HMW-GS 7+8 and 7.

The high molecular weight glutenin subunits (HMW-GS) 7+8 were introduced into the Long 97-586 (1, 7, 2+12) wheat variety (Triticum aestivum) by 5 consecutive backcrosses with biochemical marker-assisted selection. Nearly isogenic lines (NILs) of HMW-GS 7 and 7+8 were obtained, and the NILs were planted in the experimental field at the Crop Breeding Institute of Heilongjiang Academy of Agricultural Science in 2004-2006. The field experiments were designed using the two-column contrast arrangement method with six replicates in 2004-2005 and four replicates in 2006.