73 results match your criteria: "College of Idaho[Affiliation]"

Article Synopsis
  • Delimiting species boundaries is a complex issue in systematics, especially when dealing with subtle morphological variations that can arise from environmental influences or speciation.
  • The Lomatium foeniculaceum species complex, widespread in the western U.S. and Canada, has traditionally been classified into five subspecies, but genetic analysis suggests these may be distinct clades.
  • Using molecular data from the Angiosperm353 baits kit, the study identified six monophyletic clades and highlights the need for a reevaluation of taxonomic ranks based on both genetic and morphological traits.
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Two-molecule theory of polyethylene liquids.

J Chem Phys

November 2024

Department of Chemistry, The College of Idaho, Caldwell, Idaho 83605, USA.

Two-molecule theory refers to a class of microscopic, self-consistent field theories for the radial distribution function in classical molecular liquids. The version examined here can be considered as one of the very few formally derived closures to the reference interaction site model (RISM) equation. The theory is applied to polyethylene liquids, computing their equilibrium structural and thermodynamic properties at melt densities.

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The fossil record of the U.S. Pacific Northwest preserves many Middle Miocene floras with potential for revealing long-term climate-vegetation dynamics during the Miocene Climatic Optimum.

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Microfluidic devices (MFDs) offer customizable, low-cost, and low-waste platforms for performing chemical analyses. Optical spectroscopy techniques provide nondestructive monitoring of small sample volumes within microfluidic channels. Optical spectroscopy can probe speciation, oxidation state, and concentration of analytes as well as detect counterions and provide information about matrix composition.

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Introduction: Doctorate education and implications for career trajectory for postprofessional healthcare workers like physician assistants/associates (PAs) remain under¬studied.

Purpose: This scoping review identified findings from existing literature on the contribution of postprofessional doctorate (PPD) degrees to the career development of non-entry-level healthcare workers to inform the con¬temporary emergence of PA-specific doctorate programs in the United States.

Methods: The research followed the Joanna Briggs Institute methodology and the Preferred Reporting Items for Systematic Reviews and Meta-Analyses (PRISMA) extension for scoping reviews.

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Article Synopsis
  • Traditional methods for estimating ploidy levels are complex, making DNA sequence data an ideal alternative, but existing statistical approaches have limitations.
  • nQuack is introduced as an open-source R package that enhances ploidy prediction by using better model selection and appropriate statistical methods.
  • While nQuack demonstrates improved accuracy over other methods, caution is advised when using site-based heterozygosity alone for inferring ploidy.
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Background: Being one of the largest dermatology groups in the country with an in-house pathology laboratory, we have seen a significant increase in the number of adhesive-based pigmented lesion assays (ABPLAs) in addition to biopsies and excisions following a moderate-risk or high-risk result with this test.

Objective: To report our clinical experience and independently confirm that our results with this ABPLA (Pigmented lesion assay, DermTech. San Diego, CA) are consistent with the results of the validation studies completed by the test manufacturer.

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PCA and PLS Analysis of Lanthanides Using Absorbance and Single-Beam Visible Spectra.

ACS Omega

August 2024

Pacific Northwest National Laboratory, Richland, Washington 99352, United States.

During process monitoring applications, referenced optical spectroscopy, such as absorbance spectroscopy, can suffer from environmental and instrumental fluctuations that alter the intensity of irradiance reaching the spectrometer's detector at each detected frequency. Temperature, vibration, light source aging, instrument damage, detector aging, detector registry shifts, sampling cell degradation, and similar perturbations create situations in which a previously collected reference spectrum may no longer be valid for the current state of the system. This can lead to the calculation of poor-quality absorbance spectra that are unsuitable for qualitative or quantitative analysis based on prior calibration models.

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Aging decreases osteocyte peri-lacunar-canalicular system turnover in female C57BL/6JN mice.

Bone

September 2024

Department of Mechanical & Industrial Engineering, Montana State University, Bozeman, MT, USA. Electronic address:

Osteocytes engage in bone resorption and mineralization surrounding their expansive lacunar-canalicular system (LCS) through peri-LCS turnover. However, fundamental questions persist about where, when, and how often osteocytes engage in peri-LCS turnover and how these processes change with aging. Furthermore, whether peri-LCS turnover is associated with natural variation in cortical tissue strain remains unexplored.

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Premise: Theory predicts that mixed ploidy populations should be short-lived due to strong fitness disadvantages for the rare ploidy. However, mixed ploidy populations are common, suggesting that the fitness costs for rare ploidies are counterbalanced by ecological benefits that emerge when rare. We investigated whether differences in ecological interactions with soil microbes help to maintain a tetraploid-hexaploid population of Larrea tridentata (creosote bush) in the Sonoran Desert, California, United States, where prior work documented ploidy-specific root-associated microbes.

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Mycetosoritis hartmanni is a rarely collected fungus-farming ant of North America. We describe life history and nest architecture for a M. hartmanni population in central Texas, USA.

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During the COVID-19 pandemic, public health authorities have encouraged the use of face masks to minimize transmission within the community. To assess mask wear during a COVID-19 surge and guide public health response efforts, including public messaging on mask recommendations, we compared observed mask use in the largest city in each of Idaho's 2 most populous counties, both without a current mask mandate. We recorded mask usage by every third person exiting stores of 5 retail chains in Boise and Nampa during November 8-December 5, 2021.

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Education and electronic medical records and genomics network, challenges, and lessons learned from a large-scale clinical trial using polygenic risk scores.

Genet Med

September 2023

Center for Precision Medicine & Genomics, Department of Medicine, Columbia University Irving Medical Center, New York, NY; Division of Ethics, Department of Medical Humanities & Ethics, Columbia University Irving Medical Center, New York, NY. Electronic address:

Polygenic risk scores (PRS) have potential to improve health care by identifying individuals that have elevated risk for common complex conditions. Use of PRS in clinical practice, however, requires careful assessment of the needs and capabilities of patients, providers, and health care systems. The electronic Medical Records and Genomics (eMERGE) network is conducting a collaborative study which will return PRS to 25,000 pediatric and adult participants.

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The pteropod mollusk, , is a useful model system for understanding the neural basis of behavior. Of particular interest are the unique swimming behavior and neural circuitry that underlies this swimming behavior. The swimming system of has been studied by two primary groups-one in Russia and one in the United States of America-for more than four decades.

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Online spectroscopic measurements can be used to provide unique insight into complex chemical systems, enabling new understanding and optimization of chemical processes. A key example of this is discussed here with the monitoring of pH of various acid systems in real-time. In this work the acids used in multiple chemical separations processes, such as TALSPEAK (Trivalent Actinide-Lanthanide Separation by Phosphorus reagent Extraction from Aqueous Komplexes) and oxalate precipitation, were characterized.

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Organic semiconductors, including graphitic carbon nitride (g-CN, CN), represent an important class of materials for the development of novel antimicrobial or biomedical technologies. Of principal interest is the ability of these materials to catalyze the reduction of elemental oxygen to generate reactive oxygen species (ROS), including hydrogen peroxide (HO). Here, we describe the fabrication of photoactive van der Waals heterojunctions incorporating 1,4,5,8-naphthalene tetracarboxylic dianhydride (NTCDA) and CN.

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RAREsim: A simulation method for very rare genetic variants.

Am J Hum Genet

April 2022

Mathematical and Statistical Sciences, University of Colorado, Denver, Denver, CO 80204, USA; Human Medical Genetics and Genomics Program, University of Colorado Anschutz Medical Campus, Aurora, CO 80045, USA; Colorado Center for Personalized Medicine, University of Colorado Anschutz Medical Campus, Aurora, CO 80045, USA.

Identification of rare-variant associations is crucial to full characterization of the genetic architecture of complex traits and diseases. Essential in this process is the evaluation of novel methods in simulated data that mirror the distribution of rare variants and haplotype structure in real data. Additionally, importing real-variant annotation enables in silico comparison of methods, such as rare-variant association tests and polygenic scoring methods, that focus on putative causal variants.

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Effects of selenium treatment on endogenous antioxidant capacity in signal crayfish (Pacifastacus leniusculus).

Comp Biochem Physiol C Toxicol Pharmacol

June 2022

The College of Idaho, Department of Biology, 2112 Cleveland Blvd., Caldwell, ID 83605, United States of America. Electronic address:

Selenium is an essential element that plays a role in numerous physiological processes and is critical for the maintenance of a strong endogenous antioxidant system. Previous work by our research group reported that the organophosphate pesticide dimethoate decreased glutathione S-transferase activity (GST) in signal crayfish (Pacifastacus leniusculus) collected from the Boise River (Idaho, USA). The goals of this study were to examine whether: 1) sodium selenite modulated the endogenous antioxidants glutathione (GSH), metallothionein (MT), and glutathione S-transferase (GST), thus suggesting a mechanism of antioxidant activity, 2) dimethoate exposure (pro-oxidant stressor) decreased GST activity in a localized population of signal crayfish collected from the Snake River (Idaho, USA), and 3) investigate whether selenium cotreatment ameliorated the adverse effects of dimethoate on GST activity due to the antioxidant properties associated with selenium.

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Similarity in facial characteristics between relatives suggests a strong genetic component underlies facial variation. While there have been numerous studies of the genetics of facial abnormalities and, more recently, single nucleotide polymorphism (SNP) genome-wide association studies (GWASs) of normal facial variation, little is known about the role of genetic structural variation in determining facial shape. In a sample of Bantu African children, we found that only 9% of common copy number variants (CNVs) and 10-kb CNV analysis windows are well tagged by SNPs (r ≥ 0.

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Article Synopsis
  • - The study investigates the implementation and educational benefits of course-based research experiences (CRE) in STEM education over three years, involving 102 instructors from the SEA-PHAGES program.
  • - The research includes surveys and feedback sessions to understand instructors' perspectives on the goals and teaching practices of CRE, ultimately utilizing qualitative content analysis.
  • - Findings reveal three instructional models for CRE teaching: 1) acting as a scientist and generating data, 2) teaching procedural knowledge, and 3) promoting project ownership, which help inform new instructors and institutions about effective CRE instruction.
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Optical spectroscopy is a powerful characterization tool with applications ranging from fundamental studies to real-time process monitoring. However, it can be difficult to apply to complex samples that contain interfering analytes which are common in processing streams. Multivariate (chemometric) analysis has been examined for providing selectivity and accuracy to the analysis of optical spectra and expanding its potential applications.

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Idaho Institutional Development Award (IDeA) Network for Biomedical Research Excellence (INBRE) aims to build biomedical research capacity and enhance the scientific and technology knowledge of the Idaho workforce. A key INBRE Program at The College of Idaho, a primarily undergraduate institution of 1,100 students, is a 10-wk summer fellows research experience. This report documents outcomes from 2005 to present, including demographic trends, faculty and student research productivity, self-reported gains, educational attainment, and career outcomes.

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Summix: A method for detecting and adjusting for population structure in genetic summary data.

Am J Hum Genet

July 2021

Mathematical and Statistical Sciences, University of Colorado Denver, Denver, CO 80204, USA; Human Medical Genetics and Genomics Program, University of Colorado Anschutz Medical Campus, Aurora, CO 80045, USA; Colorado Center for Personalized Medicine, University of Colorado Anschutz Medical Campus, Aurora, CO 80045, USA; Biostatistics and Informatics, Colorado School of Public Health, Aurora, CO 80045, USA. Electronic address:

Publicly available genetic summary data have high utility in research and the clinic, including prioritizing putative causal variants, polygenic scoring, and leveraging common controls. However, summarizing individual-level data can mask population structure, resulting in confounding, reduced power, and incorrect prioritization of putative causal variants. This limits the utility of publicly available data, especially for understudied or admixed populations where additional research and resources are most needed.

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Premise: Speciation not associated with morphological shifts is challenging to detect unless molecular data are employed. Using Sanger-sequencing approaches, the Lomatium packardiae/L. anomalum subcomplex within the larger Lomatium triternatum complex could not be resolved.

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