632 results match your criteria: "Centre for Synthesis and Chemical Biology[Affiliation]"

Converting multiple hydrophobic aromatic plastic monomers into a single water-soluble substrate to increase bioavailability for the synthesis of polyhydroxyalkanoates by bacteria using batch, fed batch and continuous cultivation.

J Biotechnol

December 2024

School of Biomolecular and Biomedical Sciences, University College Dublin, Dublin D04 N2E5, Ireland; BiOrbic Bioeconomy Research Centre, O'Brien Centre for Science [Science East], University College Dublin, Dublin D04 N2E5, Ireland. Electronic address:

We demonstrate the proof of concept of increasing the bioavailability of carbon substrates, derived from plastic waste, for their conversion to the biodegradable polymer polyhydroxyalkanoate [PHA] by bacteria and test various approaches to PHA accumulation through batch, fed batch and continuous culture. Styrene, ethylbenzene, and toluene are produced from the pyrolysis of mixed plastic waste (Kaminsky, 2021; Miandad et al., 2017), but they are volatile and poorly soluble in water making them difficult to work with in aqueous fermentation systems.

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Article Synopsis
  • - The study focuses on embedding fullerenes into a chiral environment to create unique materials with applications in chiroptical technology and enantioselective catalysts, as well as understanding chirality-induced spin selectivity (CISS).
  • - Researchers designed a chiral Pd2L4 capsule using a special 'ribbon-shaped' ligand derived from Tröger's base naphthalimide, which offers a compact structure with a significant inner cavity for hosting fullerenes.
  • - The binding of fullerenes like C60, C70, and corannulenes in acetonitrile results in measurable changes in their optical properties, demonstrating the induction of circular dichroism (CD) that was confirmed through X-ray
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Mild and Effective Method for the Nickel-Catalyzed Arylation of Glycosyl Thiols in Aqueous Surfactant Solution.

J Org Chem

December 2024

Centre for Synthesis and Chemical Biology, UCD School of Chemistry, University College Dublin, Belfield Dublin 4, Ireland.

Aryl thioglycosides have broad applicability as both glycosyl donors and glycomimetic compounds. Their synthesis via the cross-coupling of glycosyl thiols with aryl halides has become a popular method for their construction because it allows better selectivity for anomeric configuration as well as a wider functional group tolerance compared to traditional methods. Herein, we report a nickel-catalyzed method for the synthesis of aryl thioglycosides which utilizes an aqueous micellar environment as the reaction medium.

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The preparation of a focused library of chiral 2-amido and 2-amido-1-phenyl-1,3-dienes from a range of chiral oxazolidinones using palladium-catalysis is reported. This palladium-catalyzed carbon-nitrogen bond-forming reaction provides the corresponding chiral amido-dienes in moderate to excellent yields (12 examples, up to 97%). The resulting chiral amido-dienes are employed as novel dienes in Diels-Alder (DA) reactions (58 examples, up to 93:7 dr, up to 70% yield).

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Enantioselective Organozinc Addition to Aldehydes Using Planar Chiral [2.2]Paracyclophane-Imidazoline N,O-Ligands.

Chemistry

December 2024

Centre for Synthesis and Chemical Biology (CSCB), School of Chemistry, University College Dublin (UCD), Belfield, Dublin 4, Ireland.

We present an improved and convenient synthesis of [2.2]paracyclophane-imidazoline N,O-ligands with central and planar chirality in seven steps starting from [2.2]paracyclophane.

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Article Synopsis
  • Influenza A, from the Orthomixoviridae family, causes significant mortality and health issues despite available vaccines and treatments.
  • The study tested a synthetic lipoxin mimetic, AT-01-KG, on mice infected with influenza A to see if it could improve infection outcomes.
  • Results showed that AT-01-KG reduced mortality, lung damage, and inflammation while promoting beneficial immune responses, indicating its potential use in treating severe influenza cases.
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Acyl-1,4-Dihydropyridines: Universal Acylation Reagents for Organic Synthesis.

Molecules

August 2024

Centre for Synthesis and Chemical Biology, School of Chemistry, University College Dublin, Belfield, D04 V1W8 Dublin, Ireland.

Acyl-1,4-dihydropyridines have recently emerged as universal acylation reagents. These easy-to-make and bench-stable NADH biomimetics play the dual role of single-electron reductants and sources of acyl radicals. This review article discusses applications of acyl-1,4-dihydropyridines in organic synthesis since their introduction in 2019.

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Zn(II)-catalyzed asymmetric [3 + 2] cycloaddition of acyclic enones with azomethine ylides.

Org Biomol Chem

September 2024

Centre for Synthesis and Chemical Biology, School of Chemistry, University College Dublin, Belfield, Dublin 4, Ireland.

The Zn(II)/UCD-Imphanol-catalyzed highly -selective [3 + 2] asymmetric cycloaddition of acyclic enones and azomethine ylides has been developed. Moderate to high yields (up to 94%) with excellent / selectivities (99 : 1) and enantioselectivities up to 96.5 : 3.

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Semisynthetic Glycoconjugate Vaccine Candidates against .

ACS Infect Dis

June 2024

Department of Molecular Microbiology and Immunology, Johns Hopkins Bloomberg School of Public Health, 615 North Wolfe Street, Baltimore 21205, Maryland, United States.

Article Synopsis
  • A study highlights the development of two semisynthetic vaccine candidates targeting a fungus that poses serious risks to immunocompromised patients, focusing on its key polysaccharide, glucuronoxylomannan (GXM).
  • The vaccines, containing a synthetic decasaccharide antigen (M2 motif), were conjugated to two proteins and tested in mice, showing specific immune responses and some cross-reactivity to other GXM variants.
  • While one glycoconjugate showed potential for increased survival in mice, further optimizations are needed before it can be considered for a multivalent GXM vaccine.
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Advances in the Chemistry and Biology of Specialised Pro-Resolving Mediators (SPMs).

Molecules

May 2024

Centre for Synthesis and Chemical Biology, UCD School of Chemistry, University College Dublin, Belfield, D04 N2E5 Dublin, Ireland.

This review article assembles key recent advances in the synthetic chemistry and biology of specialised pro-resolving mediators (SPMs). The major medicinal chemistry developments in the design, synthesis and biological evaluation of synthetic SPM analogues of lipoxins and resolvins have been discussed. These include variations in the top and bottom chains, as well as changes to the triene core, of lipoxins, all changes intended to enhance the metabolic stability whilst retaining or improving biological activity.

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The Pd-catalysed decarboxylative asymmetric allylic alkylation (DAAA) has been applied to the enantioselective synthesis of sterically hindered benzofuran-3(2H)-one-derived α-aryl-β-keto esters employing the (R,R)-ANDEN phenyl Trost ligand. A range of substrates were synthesised, employing previously developed aryllead triacetate methodology to install various aryl groups. The resulting α-aryl-α-allyl benzofuran-3(2H)-one DAAA products were obtained in moderate to high yields and in enantioselectivities of up to 96 % ee, with the best results observed for substrates containing a di-ortho-substitution pattern on the aryl ring as well as naphthyl-containing substrates.

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Ruthenium(ii) complexes are attracting significant research attention as a promising class of photosensitizers (PSs) in photodynamic therapy (PDT). Having previously reported the synthesis of two novel Ru(ii)-polypyridyl-1,8-naphthalimide Tröger's base compounds 1 and 2 with interesting photophysical properties, where the emission from either the Ru(ii) polypyridyl centres or the naphthalimide moieties could be used to monitor binding to nucleic acids, we sought to use these compounds to investigate further and in more detail their biological profiling, which included unravelling their mechanism of cellular uptake, cellular trafficking and cellular responses to photoexcitation. Here we demonstrate that these compounds undergo rapid time dependent uptake in HeLa cells that involved energy dependent, caveolae and lipid raft-dependent mediated endocytosis, as demonstrated by confocal imaging, and transmission and scanning electron microscopy.

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Glycosylated polyene macrolides are important antifungal agents that are produced by many actinomycete species. Development of new polyenes may deliver improved antibiotics. Here, was genetically re-programmed to synthesise pentaene analogues of the heptaene amphotericin B.

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Biosynthesis of a new skyllamycin in : a cytochrome P450 forms an epoxide in the cinnamoyl chain.

Org Biomol Chem

April 2024

Centre for Synthesis and Chemical Biology and School of Biomolecular and Biomedical Science, University College Dublin, Ireland.

Activation of a silent gene cluster in leads to synthesis of a cinnamoyl-containing non-ribosomal peptide (CCNP) that is related to skyllamycins. This novel CCNP was isolated and its structure was interrogated using mass spectrometry and nuclear magnetic resonance spectroscopy. The isolated compound is an oxidised skyllamycin A in which an additional oxygen atom is incorporated in the cinnamoyl side-chain in the form of an epoxide.

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Published work has shown that glycoconjugate vaccines, based on truncated detoxified lipopolysaccharides from Moraxella catarrhalis attached through their reducing end to a carrier protein, gave good protection for all three serotypes A, B, and C in mice immunisation experiments. The (from the non-reducing end) truncated LPS structures were obtained from bacterial glycosyl transferase knock-out mutants and contained the de-esterified Lipid A, two Kdo residues and five glucose moieties. This work describes the chemical synthesis of the same outer Moraxella LPS structures, spacer-equipped and further truncated from the reducing end, i.

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Article Synopsis
  • A fungus classified as a critically important pathogen by the WHO poses a serious threat to immunocompromised individuals, motivating research on potential vaccines.
  • The study focuses on two semi-synthetic glycoconjugate vaccines that target a specific capsular polysaccharide (GXM) common in most cryptococcosis cases, created by conjugating a synthetic decasaccharide antigen to two different proteins.
  • Immunization in mice showed promising results with one glycoconjugate leading to increased survival rates and specific antibody responses, although more optimization is needed for it to become part of a broader vaccine strategy.
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The structure of a polysaccharide motif recognized by protective antibodies: A combined NMR and MD study.

Proc Natl Acad Sci U S A

February 2024

Laboratory of Bacterial Polysaccharides, Office of Vaccines Research and Review, Center for Biologics Evaluation and Research, U.S. Food and Drug Administration, Silver Spring, MD 20993.

is a fungal pathogen responsible for cryptococcosis and cryptococcal meningitis. The ' capsular polysaccharide and its shed exopolysaccharide function both as key virulence factors and to protect the fungal cell from phagocytosis. Currently, a glycoconjugate of these polysaccharides is being explored as a vaccine to protect against infection.

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The synthesis of gram quantities of the TF antigen (β-ᴅ-Gal-(1→3)-α-ᴅ-GalNAc) and its 3'-sulfated analogue with a TEG-N spacer attached is described. The synthesis of the TF antigen comprises seven steps, from a known -Troc-protected galactosamine donor, with an overall yield of 31%. Both the spacer (85%) and the galactose moiety (79%) were introduced using thioglycoside donors in NIS/AgOTf-promoted glycosylation reactions.

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Regioselective Partial Hydrogenation and Deuteration of Tetracyclic (Hetero)aromatic Systems Using a Simple Heterogeneous Catalyst.

Chemistry

March 2024

School of Chemistry, Analytical and Biological Chemistry Research Facility, University College Cork, Robert Kane Building, Western Road, Cork.

The introduction of added '3-dimensionality' through late-stage functionalisation of extended (hetero)aromatic systems is a powerful synthetic approach. The abundance of starting materials and cross-coupling methodologies to access the precursors allows for highly diverse products. Subsequent selective partial reduction can alter the core structure in a manner of interest to medicinal chemists.

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Enantioselective Copper-Catalyzed Alkynylation of Quinolones Using Chiral P,N Ligands.

J Org Chem

February 2024

Centre for Synthesis and Chemical Biology, Synthesis and Solid State Pharmaceutical Centre, School of Chemistry, University College Dublin, Belfield, Dublin 4, Ireland.

Herein we report a catalytic enantioselective alkynylation of quinolones. In this reaction, quinolones are silylated to form a quinolinium ion which then undergoes an enantioselective attack by a copper acetylide, templated by (,,)-UCD-Phim. This gives alkynylated products (24 examples) in yields of up to 92% and enantioselectivities of up to 97%.

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Antibodies play a vital role in the immune response to infectious diseases and can be administered passively to protect patients. In the case of , a WHO critical priority fungal pathogen, infection results in antibodies targeting capsular glucuronoxylomannan (GXM). These antibodies yield protective, non-protective, and disease-enhancing outcomes when administered passively.

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A general synthesis of aromatic and heteroaromatic lipoxin B analogues.

Org Biomol Chem

October 2023

Centre for Synthesis and Chemical Biology, School of Chemistry, University College Dublin, Belfield, Dublin 4, Ireland.

Lipoxins are an important class of pro-resolving mediators that play a crucial role in the resolution of inflammation. Thus, the synthesis of more chemically and metabolically stable synthetic lipoxin analogues is an area of significant interest. Whereas synthetic analogues of lipoxin A (LXA) have been well studied, analogues of lipoxin B (LXB) have been the focus of considerably less attention.

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The structure of a polysaccharide motif recognized by protective antibodies: A combined NMR and MD study.

bioRxiv

September 2023

Laboratory of Bacterial Polysaccharides, Office of Vaccines Research and Review, Center for Biologics Evaluation and Research, U.S. Food and Drug Administration, Silver Spring, MD, USA.

Article Synopsis
  • Cryptococcus neoformans is a fungal pathogen that causes cryptococcosis and cryptococcal meningitis, using its capsular polysaccharides for virulence and protection against immune attacks.
  • * A vaccine based on a glycoconjugate of the polysaccharides is being developed to prevent infections.
  • * The study employed NMR and MD techniques to analyze the structure of GXM10-Ac, a synthetic decasaccharide, revealing its flexible configuration and its interaction with protective antibodies specific to GXM.
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Bismacycles featuring a sulfone-bridged scaffold have recently been developed as versatile and convenient electrophilic arylating agents. Here, we report that the exocyclic aryl group, which is ultimately transferred to a nucleophilic coupling partner, can be functionalized through cross-coupling, heteroatom substitutions, oxidations and reductions, and protecting group manipulations. This "postsynthetic modification" approach provides concise and divergent access to complex aryl bismacycles.

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The majority of the world population carry the gastric pathogen . Fortunately, most individuals experience only low-grade or no symptoms, but in many cases the chronic inflammatory infection develops into severe gastric disease, including duodenal ulcer disease and gastric cancer. Here we report on a protective mechanism where attachment and accompanying chronic mucosal inflammation can be reduced by antibodies that are present in a vast majority of carriers.

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