Computational Methods for Predicting Effectors in Rust Pathogens.

Lower costs and improved sequencing technologies have led to a large number of high-quality rust pathogen genomes and deeper characterization of gene expression profiles during early and late infection stages. However, the set of secreted proteins expressed during infection is too large for experimental investigations and contains not only effectors but also proteins that play a role in niche colonization or in fighting off competing microbes. Therefore, accurate computational prediction is essential for identifying high-priority rust effector candidates from secretomes.

Combined consideration for decentralised non-potable water supply from local groundwater and nutrient load reduction in urban drainage.

Integrated analysis of land use change and its effect on catchment water balance allows the selection of appropriate water and land management options for new urban developments to minimise the environmental impacts of urbanisation. A process-based coupled surface water-groundwater model was developed for Southern River catchment (Perth, Western Australia) to investigate the effect of urban development on catchment water balance. It was shown that urbanisation of highly permeable flat catchments with shallow groundwater resulted in significant increase in net groundwater recharge.

Desensitization of GSTF8 induction by a prior chemical treatment is long lasting and operates in a tissue-dependent manner.

The Arabidopsis (Arabidopsis thaliana) GSTF8 gene is a member of the glutathione S-transferase (GST) family whose expression is induced by defense signals, certain chemical stresses, and some pathogens. Here, we have used transgenic plants and an in vivo imaging system to demonstrate that GSTF8 expression is subject to a distinct desensitization phenomenon because prior chemical treatment significantly reduces reactivation of the GSTF8 promoter by hydrogen peroxide, auxin, and salicylic acid. A GSTF8 null line had similar desensitization properties to wild type, demonstrating that GSTF8 protein levels are not responsible for desensitization.

Transcription factors in plant defense and stress responses.

Transcriptional control of the expression of stress-responsive genes is a crucial part of the plant response to a range of abiotic and biotic stresses. Research carried out in the past few years has been productive in identifying transcription factors that are important for regulating plant responses to these stresses. These studies have also revealed some of the complexity and overlap in the responses to different stresses, and are likely to lead to new ways to enhance crop tolerance to disease and environmental stress.