Determination of Microtubule Lattice Parameters from Cryo-electron Microscope Images Using TubuleJ.

The α-β tubulin heterodimer undergoes subtle conformational changes during microtubule assembly. These can be modulated by external factors, whose effects on microtubule structure can be characterized on 2D views obtained by cryo-electron microscopy. Analysis of microtubule images is facilitated if they are straight enough to interpret and filter their image Fourier transform, which provide useful information concerning the arrangement of tubulin molecules inside the microtubule lattice.

A Monte Carlo framework for missing wedge restoration and noise removal in cryo-electron tomography.

We propose a statistical method to address an important issue in cryo-electron tomography image analysis: reduction of a high amount of noise and artifacts due to the presence of a missing wedge (MW) in the spectral domain. The method takes as an input a 3D tomogram derived from limited-angle tomography, and gives as an output a 3D denoised and artifact compensated volume. The artifact compensation is achieved by filling up the MW with meaningful information.

A computational approach for detecting micro-domains and confinement domains in cells: a simulation study.

In this paper, we aim to detect trapping areas (equivalently microdomains or confinement areas) within cells, corresponding to regions where molecules are trapped and thereby undergo subdiffusion. We propose an original computational approach that takes as input a set of molecule trajectories estimated by appropriate tracking methods. The core of the algorithm is based on a combination of clustering algorithms with trajectory classification procedures able to distinguish subdiffusion, superdiffusion and Brownian motion.

Bacterial diversity on stainless steel surfaces of egg processing companies and potential of selected isolates to spoil liquid whole egg products.

Aims: To assess the bacterial diversity in the French egg processing industry and to explore the adhesion and spoilage potential of selected bacteria.

Methods And Results: Sterile stainless steel chips were suspended for 2 months inside the pipelines of seven egg processing companies, before and after the pasteurizer, at warm and cold seasons. After exposure, the bacterial diversity was assessed by 16S rDNA sequencing.

A sequential algorithm to detect diffusion switching along intracellular particle trajectories.

Motivation: Recent advances in molecular biology and fluorescence microscopy imaging have made possible the inference of the dynamics of single molecules in living cells. Changes of dynamics can occur along a trajectory. Then, an issue is to estimate the temporal change-points that is the times at which a change of dynamics occurs.

How do walkers behave when crossing the way of a mobile robot that replicates human interaction rules?

Previous studies showed the existence of implicit interaction rules shared by human walkers when crossing each other. Especially, each walker contributes to the collision avoidance task and the crossing order, as set at the beginning, is preserved along the interaction. This order determines the adaptation strategy: the first arrived increases his/her advance by slightly accelerating and changing his/her heading, whereas the second one slows down and moves in the opposite direction.

How do walkers avoid a mobile robot crossing their way?

Robots and Humans have to share the same environment more and more often. In the aim of steering robots in a safe and convenient manner among humans it is required to understand how humans interact with them. This work focuses on collision avoidance between a human and a robot during locomotion.

Finding and Characterizing Repeats in Plant Genomes.

Plant genomes contain a particularly high proportion of repeated structures of various types. This chapter proposes a guided tour of available software that can help biologists to look for these repeats and check some hypothetical models intended to characterize their structures. Since transposable elements are a major source of repeats in plants, many methods have been used or developed for this large class of sequences.

Life Cycle Assessment of mechanical biological pre-treatment of Municipal Solid Waste: a case study.

The environmental performance of mechanical biological pre-treatment (MBT) of Municipal Solid Waste is quantified using Life Cycle Assessment (LCA), considering one of the 57 French plants currently in operation as a case study. The inventory is mostly based on plant-specific data, extrapolated from on-site measurements regarding mechanical and biological operations (including anaerobic digestion and composting of digestate). The combined treatment of 46,929 tonnes of residual Municipal Solid Waste and 12,158 tonnes of source-sorted biowaste (as treated in 2010 at the plant) generates 24,550 tonnes CO2-eq as an impact on climate change, 69,943kg SO2-eq on terrestrial acidification and 19,929kg NMVOC-eq on photochemical oxidant formation, in a life-cycle perspective.

Evolutionary impact assessment: accounting for evolutionary consequences of fishing in an ecosystem approach to fisheries management.

Managing fisheries resources to maintain healthy ecosystems is one of the main goals of the ecosystem approach to fisheries (EAF). While a number of international treaties call for the implementation of EAF, there are still gaps in the underlying methodology. One aspect that has received substantial scientific attention recently is fisheries-induced evolution (FIE).

Collision avoidance between two walkers: role-dependent strategies.

This paper studies strategies for collision avoidance between two persons walking along crossing trajectories. It has been previously demonstrated that walkers are able to anticipate the risk of future collision and to react accordingly. The avoidance task has been described as a mutual control of the future distance of closest approach, MPD (i.

Bayesian inference of models and hyperparameters for robust optical-flow estimation.

Selecting optimal models and hyperparameters is crucial for accurate optical-flow estimation. This paper provides a solution to the problem in a generic Bayesian framework. The method is based on a conditional model linking the image intensity function, the unknown velocity field, hyperparameters, and the prior and likelihood motion models.

Sterol limitation in a pollen-fed omnivorous lady beetle (Coleoptera: Coccinellidae).

Nutritional constraints of non-prey foods for entomophagous arthropods are seldom investigated, yet are crucial to understanding their nutritional ecology and function within natural and managed environments. We investigated whether pollen from five maize hybrids was of variable quality for the lady beetle, Coleomegilla maculata, whether suitability of these pollens was related with their sterol profiles, and how augmenting sterols (beta-sitosterol, cholesterol, or ergosterol) affected the fitness and performance of C. maculata.

Concentrations and characteristics of procyanidins and other phenolics in apples during fruit growth.

Apples (Malus domestica Borkh.) of two table and two cider cultivars were collected during fruit growth and maturation from the end of cell proliferation. Concentrations of flavonoids (flavan-3-ols, dihydrochalcones and flavonols) in the fruit flesh decreased sharply between circa 35 and circa 100 days after flowering.

Specific detection of the PVY(N)-W variant of Potato virus Y.

PVY(N)-W is one of the variant populations of Potato virus Y (PVY). This variant is of concern in seed potato production and requires a specific diagnosis since it induces more or less symptomless infections and is not detectable easily in field inspections. Moreover, this variant is serologically indistinguishable from the common strain PVY(O).

[Effects of dietary fats of vegetable and animal origin on lipid synthesis in pigs].

We have compared the effect of dietary fats, unsaturated (rapeseed oil: RO) or saturated (cow milk: CM), on growth performance, lipogenesis and fatty acid composition of backfat. Both group had the same food intake and growth performance. Nevertheless, the percentage of body fat increases with the diet RO (P < 0.

Visualization of a luteovirus in the vector aphid's body by two gold immunolabelling techniques: a comparative study.

Two gold immunolabelling techniques using electron microscopy were compared to examine the in situ localization of a luteovirus, potato leafroll virus (PLRV), inside its main aphid vector, Myzus persicae SULZ. With Gildow's technique, virus particles were labelled prior to fixation, embedding by injecting PLRV-specific IgGs into the living aphids. This facilitated the detection of extracellular particles located between the basal lamina and plasmalemma by trapping them in aggregates.

Self-selection by growing pigs of diets differing in lysine content.

Two 42-d experiments were conducted with 60 and 100 Large White growing pigs, initially weighing 17.7 and 18.3 kg, respectively, to determine their ability to select between diets varying in lysine content.