A generic model to simulate air-borne diseases as a function of crop architecture.

In a context of pesticide use reduction, alternatives to chemical-based crop protection strategies are needed to control diseases. Crop and plant architectures can be viewed as levers to control disease outbreaks by affecting microclimate within the canopy or pathogen transmission between plants. Modeling and simulation is a key approach to help analyze the behaviour of such systems where direct observations are difficult and tedious.

Narcisse: a mirror view of conserved syntenies.

New methods and tools are needed to exploit the unprecedented source of information made available by the completed and ongoing whole genome sequencing projects. The Narcisse database is dedicated to the study of genome conservation, from sequence similarities to conserved chromosomal segments or conserved syntenies, for a large number of animals, plants and bacterial completely sequenced genomes. The query interface, a comparative genome browser, enables to navigate between genome dotplots, comparative maps and sequence alignments.

Inter-relationship of microbial activity, digestion and gut health in the rabbit: effect of substituting fibre by starch in diets having a high proportion of rapidly fermentable polysaccharides.

Caecal microbial activity, digestion and gut health were analysed in the young rabbit, in response to fibre substitution by starch, in diets with high proportions of rapidly fermentable polysaccharides (pectins+hemicelluloses:acid-detergent fibre (ADF) ratio of 1.7). A range of five diets corresponding to a 60 % linear reduction of the ADF level (230 to 92 g ADF/kg) without changes in the fibre quality, and to a corresponding linear increase in dietary starch, was given ad libitum to young rabbits from 18 d until 70 d of age.

The number of lines of descent and fixation probabilities of alleles in the pure genetic drift process: analytical approximations.

Analysis of diversity between populations diverged from an evolutionarily small number of generations cannot be done under the assumption that allele frequencies reflect an equilibrium between genetic drift and mutations. An alternative to analysis through coalescence theory is proposed in this situation by developing analytical approximations. Using a Poisson approximation of its distribution, the expected number of genes from one generation whose copies make up the population after a number of generations characterized by fixation index F can be shown to be approximated by 2/F-1, irrespective of population size, and probabilities of fixation of alleles over a finite period of time can be also approximated.

Heritabilities and genetic correlations of body weights and feather length in growing Muscovy selected in Taiwan.

1. Heritabilities and genetic correlations in the base population of a closed strain of Muscovy duck, moderately selected for body weight at 10 weeks of age, have been estimated from the data of 9 successive generations for the following traits: male and female body weight at 10 and 18 weeks of age (BW10m, BW18m, BW10f, BW18f) and length of the 8th primary feather at 10 weeks of age (F110m, F110f). 2.

A first catalog of genes involved in pig ovarian follicular differentiation.

As a first step toward the characterization of genetic expression in pig ovaries, we have selected 238 clones by differential hybridization from a pig granulosa cell cDNA library, using probes prepared from RNA extracted from either untreated or FSH-treated cells and, in order to generate expressed sequence tags (ESTs), we have performed 3' and 5' single-pass sequencing of these clones. Sequences of the 3' end of the 167 clones that produced informative sequence data were first compared with each other, revealing a redundancy level of 21%. Sequences from the 136 unique clones were analyzed for similarities with sequence data included in Genbank and EMBL databases.

Protein kinase C inhibition of in vitro FSH-induced differentiation in pig granulosa cells.

In granulosa cells, growth factor IGF I plays a major role in both growth and differentiation, acting through an autocrine/paracrine mechanism, and its production is regulated by FSH, via cyclic AMP (cAMP). As protein kinase C is also involved in granulosa cell function, we investigated the possibility that its activation could balance the positive effects of FSH. Using pig granulosa cells cultured in vitro, we studied the effects of protein kinase C activation by tetradecanoylphorbol acetate (TPA) on IGF I mRNA level.

In vivo study of circadian variations of the cecal fermentation pattern in postweaned and adult rabbits.

Two groups of cecal cannulated rabbits (postweaned and adult, 6 and 16 wk of age, respectively) were used to compare the circadian variations of the fermentation pattern. Rabbits were kept in metabolism cages under a 12:12 light-dark schedule (0700 to 1900). For each rabbit, a total of 12 samples of cecal material were collected (every 12 h) for six consecutive days to cover a 24-h cycle; feed ingestion and hard feces elimination were recorded.

Optimal structure of protocol designs for building genetic linkage maps in livestock.

We investigated protocol designs for gene mapping in livestock. The optimization of the population structure was based on the empirical variance of the recombination rate estimator. We concluded that a mixture of half-sib and full-sib families is preferred to half-sib families; a knowledge of parental phases does not improve the quality of the estimation for typical livestock families with five offspring or more; and measurements of the genotype of the mates in half-sib families are not useful.

[Effect of dietary fiber content reduction on digestive transit in the rabbit. Comparison and validation of models fitted to fecal marker excretion kinetics].

The rate of passage (RP) in several digestive compartments was studied in 4 adult female rabbits cannulated at ileum, and receiving ad libitum 3 diets with decreasing fibre content (40, 30 and 22% NDF). The RP values in the whole digestive tract and between ileum and rectum were simultaneously measured by following the fecal kinetics of 2 markers (169Yb and 141Ce adsorbed on the NDF fraction of the diets) given as single doses. The mean retention time (MRT) in the whole tract provided by modelling methods (models: Grovum and Williams or Ellis) were similar to those obtained by reference method (numeric integration).

Localization of the porcine growth hormone gene to chromosome 12p1.2-->p1.5.

The gene encoding the porcine growth hormone (GH) has been localized to the q-arm of chromosome 12 using high-resolution R-banded chromosomes for in situ hybridization. We report here the localization of GH on the p-arm of this chromosome when using in situ hybridization on high-resolution G-banded chromosomes. Sequential Q- and R-banding show that this discrepancy is caused by a reversed orientation of chromosome 12 in the R-banded high-resolution karyotype published by Rønne et al.

Localization of pig Na+,K(+)-ATPase alpha and beta subunit genes to chromosome 4 by radioactive in situ hybridization.

Two genes coding for Na+,K(+)-ATPase alpha and beta subunits are localized on pig chromosome 4, to the q1.6-->q2.3 and 1.

Localization of the pig luteinizing hormone/choriogonadotropin receptor gene (LHCGR) by radioactive and nonradioactive in situ hybridization.

The porcine gene for luteinizing hormone/choriogonadotropin receptor (LHCGR) was localized to chromosome 3q2.2----q2.3 using radioactive and nonradioactive in situ hybridization.

Genetic analysis of fingerprints in Mérinos d'Arles x Booroola Merino crossbred sheep.

The M13.13 minisatellite probe, consisting of a polymer of the M13 VNTR consensus sequence, cross-hybridized to ovine DNA and allowed detection of several polymorphic loci. Individual specific patterns were obtained in sheep using this probe.

The gene map of the pig (Sus scrofa domestica L.): a review.

A review of the present status of the porcine gene map is given with references. A total of 84 loci have now been studied, and genes have been assigned to 17 chromosomes. Among them, six chromosomes are defined by only one marker.

The high-resolution GTG-banding pattern of pig chromosomes.

A high-resolution GTG-banded karyotype of the pig was obtained after methotrexate-induced cell synchronization. A diagrammatic representation of the banding pattern at the 539-band level is presented.

Localization on pig chromosome 6 of markers GPI, APOE, and ENO1, carried by human chromosomes 1 and 19, using in situ hybridization.

In the pig, the linkage group around the halothane gene (HAL), composed of S-GPI-HAL-H-A1BG-PGD, has been assigned to bands p1.2----q2.2 of chromosome 6.

Assignment of nucleoside phosphorylase gene to q2.1----q2.2 region of chromosome 7 in the pig, Sus scrofa domestica L.

Using in situ hybridization with a human probe, we have mapped the nucleoside phosphorylase gene on pig chromosome 7. These results are in agreement with those obtained by other groups, but give a more precise localization in the q2.1----q2.

Localization of the PGD and TGF beta-1 loci to pig chromosome 6q.

The TGF beta-1 and PGD loci have been localized by in situ hybridization to the C-greater than q2.1 and q2.2 -greater than q2.