How genomics can help biodiversity conservation.

The availability of public genomic resources can greatly assist biodiversity assessment, conservation, and restoration efforts by providing evidence for scientifically informed management decisions. Here we survey the main approaches and applications in biodiversity and conservation genomics, considering practical factors, such as cost, time, prerequisite skills, and current shortcomings of applications. Most approaches perform best in combination with reference genomes from the target species or closely related species.

Post-mortem enamel surface texture alteration during taphonomic processes-do experimental approaches reflect natural phenomena?

Experimental approaches are often used to better understand the mechanisms behind and consequences of post-mortem alteration on proxies for diet reconstruction. Dental microwear texture analysis (DMTA) is such a dietary proxy, using dental wear features in extant and extinct taxa to reconstruct feeding behaviour and mechanical food properties. In fossil specimens especially, DMTA can be biased by post-mortem alteration caused by mechanical or chemical alteration of the enamel surface.

Adding pieces to the puzzle: insights into diversity and distribution patterns of Cumacea (Crustacea: Peracarida) from the deep North Atlantic to the Arctic Ocean.

The Nordic Seas have one of the highest water-mass diversities in the world, yet large knowledge gaps exist in biodiversity structure and biogeographical distribution patterns of the deep macrobenthic fauna. This study focuses on the marine bottom-dwelling peracarid crustacean taxon Cumacea from northern waters, using a combined approach of morphological and molecular techniques to present one of the first insights into genetic variability of this taxon. In total, 947 specimens were assigned to 77 morphologically differing species, representing all seven known families from the North Atlantic.

Finite element analysis relating shape, material properties, and dimensions of taenioglossan radular teeth with trophic specialisations in Paludomidae (Gastropoda).

The radula, a chitinous membrane with embedded tooth rows, is the molluscan autapomorphy for feeding. The morphologies, arrangements and mechanical properties of teeth can vary between taxa, which is usually interpreted as adaptation to food. In previous studies, we proposed about trophic and other functional specialisations in taenioglossan radulae from species of African paludomid gastropods.

Recent speciation and hybridization in Icelandic deep-sea isopods: An integrative approach using genomics and proteomics.

The crustacean marine isopod species Haploniscus bicuspis (Sars, 1877) shows circum-Icelandic distribution in a wide range of environmental conditions and along well-known geographic barriers, such as the Greenland-Iceland-Faroe (GIF) Ridge. We wanted to explore population genetics, phylogeography and cryptic speciation as well as investigate whether previously described, but unaccepted subspecies have any merit. Using the same set of specimens, we combined mitochondrial COI sequences, thousands of nuclear loci (ddRAD), and proteomic profiles, plus selected morphological characters using confocal laser scanning microscopy (CLSM).

Collective effect of damage prevention in taenioglossan radular teeth is related to the ecological niche in Paludomidae (Gastropoda: Cerithioidea).

The molluscan radula, a thin membrane with embedded rows of teeth, is the structure for food processing and gathering. For proper functioning, radular failures must be either avoided or reduced when interacting with the preferred food, as this might be of high significance for the individual fitness. Thus, the analysis of structural failure in radular teeth could be included in studies on trophic specializations.

Mechanical property gradients of taenioglossan radular teeth are associated with specific function and ecological niche in Paludomidae (Gastropoda: Mollusca).

Biological tissues may exhibit graded heterogeneities in structure and mechanical properties that are crucial to their function. One biological structure that shows variation in both structure and function is the molluscan radula: the organ comprises a chitinous membrane with embedded teeth and serves to process and gather food. The tooth morphologies had been well studied in the last decades, but the mechanical properties of the teeth are not known for the vast majority of molluscs.

Description of a new eelpout Pachycara angeloi sp. nov. (Perciformes: Zoarcidae) from deep-sea hydrothermal vent fields in the Indian Ocean.

A new species of eelpout genus Pachycara Zugmayer, 1911 is described based on five specimens caught at a depth of 24193275 m along the Central and Southeast Indian Ridges in the Indian Ocean. The specimens were collected during the INDEX cruises in 2016, 2018 and 2019, respectively. The new species is distinguished from its congeners by the following combination of characters: scales and pelvic fins absent; lateral line configuration mediolateral; dorsal fin origin associated with vertebrae 79 with no free predorsal pterygiophores; vertebrae 2728 + 5759 = 8587; dorsal-fin rays 7880, anal-fin rays 5862; pectoral fin rays 1315.

Radular force performance of stylommatophoran gastropods (Mollusca) with distinct body masses.

The forces exerted by the animal's food processing structures can be important parameters when studying trophic specializations to specific food spectra. Even though molluscs represent the second largest animal phylum, exhibiting an incredible biodiversity accompanied by the establishment of distinct ecological niches including the foraging on a variety of ingesta types, only few studies focused on the biomechanical performance of their feeding organs. To lay a keystone for future research in this direction, we investigated the in vivo forces exerted by the molluscan food gathering and processing structure, the radula, for five stylommatophoran species (Gastropoda).

Feeding experiments on Vittina turrita (Mollusca, Gastropoda, Neritidae) reveal tooth contact areas and bent radular shape during foraging.

The radula is the food gathering and processing structure and one important autapomorphy of the Mollusca. It is composed of a chitinous membrane with small, embedded teeth representing the interface between the organism and its ingesta. In the past, various approaches aimed at connecting the tooth morphologies, which can be highly distinct even within single radulae, to their functionality.

Anatomical features of the phytotelma dwelling, egg-eating, fanged tadpoles of Rhacophorus vampyrus (Anura: Rhacophoridae).

Tadpoles of the Vampire tree frog Rhacophorus vampyrus differ substantially from other rhacophorid tadpoles, by having profound modifications in external morphology. The morphological peculiarities of this species likely correlate with their arboreal microhabitat and strict oophagous diet. In this work, we examine buccal and musculoskeletal anatomy and compare them to other rhacophorid and egg-eating larvae.

Trophic specialisation reflected by radular tooth material properties in an "ancient" Lake Tanganyikan gastropod species flock.

Background: Lake Tanganyika belongs to the East African Great Lakes and is well known for harbouring a high proportion of endemic and morphologically distinct genera, in cichlids but also in paludomid gastropods. With about 50 species these snails form a flock of high interest because of its diversity, the question of its origin and the evolutionary processes that might have resulted in its elevated amount of taxa. While earlier debates centred on these paludomids to be a result of an intralacustrine adaptive radiation, there are strong indications for the existence of several lineages before the lake formation.

Influence of water content on mechanical behaviour of gastropod taenioglossan radulae.

One molluscan autapomorphy is the radula, the organ used for feeding. Here, for the first time, the performance and failure of taenioglossan radular teeth were tested in a biomechanical experiment which in turn allowed building hypotheses about tooth functionalities. Shear load was applied to tooth cusps with a force transducer until structural failure occurred, the broken area was measured, and finally breaking stress was calculated.

Accuracy of bone segmentation and surface generation strategies analyzed by using synthetic CT volumes.

Different kinds of bone measurements are commonly derived from computed-tomography (CT) volumes to answer a multitude of questions in biology and related fields. The underlying steps of bone segmentation and, optionally, polygon surface generation are crucial to keep the measurement error small. In this study, the performance of different, easily accessible segmentation techniques (global thresholding, automatic local thresholding, weighted random walk, neural network, and watershed) and surface generation approaches (different algorithms combined with varying degrees of simplification) was analyzed and recommendations for minimizing inaccuracies were derived.

Movement analysis of primate molar teeth under load using synchrotron X-ray microtomography.

Mammalian teeth have to sustain repetitive and high chewing loads without failure. Key to this capability is the periodontal ligament (PDL), a connective tissue containing a collagenous fibre network which connects the tooth roots to the alveolar bone socket and which allows the teeth to move when loaded. It has been suggested that rodent molars under load experience a screw-like downward motion but it remains unclear whether this movement also occurs in primates.

Ecomorphology of the pectoral girdle in anurans (Amphibia, Anura): Shape diversity and biomechanical considerations.

Frogs and toads (Lissamphibia: Anura) show a diversity of locomotor modes that allow them to inhabit a wide range of habitats. The different locomotor modes are likely to be linked to anatomical specializations of the skeleton within the typical frog Bauplan. While such anatomical adaptations of the hind limbs and the pelvic girdle are comparably well understood, the pectoral girdle received much less attention in the past.

Not just scratching the surface: distinct radular motion patterns in Mollusca.

The radula is the organ for mechanical food processing and an important autapomorphy of Mollusca. Its chitinous membrane, embedding small radular teeth, is moved by the set of muscles resulting in an interaction with the ingesta, tearing it and collecting loosened particles. Radulae and their teeth can be quite distinct in their morphology and had been of high research interest, but only a few studies have examined the basic functional principles of this organ, the movement and motion during feeding action.

Opportunistically collected data from aerial surveys reveal spatio-temporal distribution patterns of marine debris in German waters.

Marine debris is known for its ubiquitousness and harmful effects on marine life. This study is the first analysis to provide information on the distribution of floating marine debris in German waters using aerial survey data collected between 2002 and 2016. During regular harbour porpoise monitoring flights, 191,167 km were covered and 26,512 floating debris items recorded (average encounter rate 0.

Finite element analysis of individual taenioglossan radular teeth (Mollusca).

Molluscs are a highly successful group of invertebrates characterised by a specialised feeding organ called the radula. The diversity of this structure is associated with distinct feeding strategies and ecological niches. However, the precise function of the radula (each tooth type and their arrangement) remains poorly understood.

One species, two developmental modes: a case of geographic poecilogony in marine gastropods.

Background: Poecilogony, the presence of two developmental modes in the same animal species, is a rare phenomenon. Few cases of poecilogony have been suggested for marine invertebrates including molluscs and even less stood extensive testing, mostly revealing a species pair with differing developmental modes. We studied a textbook example of poecilogony in the viviparous snail Planaxis sulcatus (Gastropoda: Planaxidae), for the first time throughout its entire distribution range.

The biomechanical importance of the scaphoid-centrale fusion during simulated knuckle-walking and its implications for human locomotor evolution.

Inferring the locomotor behaviour of the last common ancestor (LCA) of humans and African apes is still a divisive issue. An African great-ape-like ancestor using knuckle-walking is still the most parsimonious hypothesis for the LCA, despite diverse conflicting lines of evidence. Crucial to this hypothesis is the role of the centrale in the hominoid wrist, since the fusion of this bone with the scaphoid is among the clearest morphological synapomorphies of African apes and hominins.

Adding the West-African riverine component: Revision of the Recent freshwater snails belonging to Pseudocleopatra Thiele, 1928 (Caenogastropoda, Cerithioidea, Paludomidae).

While Africa's lacustrine gastropod fauna, in particular of Lake Tanganyika, has received much attention, the continent's riverine malacofauna has long been neglected. Pseudocleopatra is a relatively poorly known paludomid gastropod genus with species found throughout the lower reaches of the West African Volta and Congo rivers. In the course of ongoing systematic revisions of African paludomids, we present here a morphometric analysis and revision of the recent species assigned to the genus, i.

Differences in the Young modulus and hardness reflect different functions of teeth within the taenioglossan radula of gastropods.

One important autapomorphy of molluscs is the radula, which is the anatomical structure used for feeding in most species of Mollusca. As this phylum represents the second species-richest animal group inhabiting very diverse environments, it is not surprising that the morphology of the radula and its teeth is also very diverse between taxa. However, the taenioglossan radulae are remarkable because its tooth types (central, lateral, and marginal teeth) are highly distinct in their morphology within the same radula.

In slow motion: radula motion pattern and forces exerted to the substrate in the land snail (Mollusca, Gastropoda) during feeding.

The radula is the anatomical structure used for feeding in most species of Mollusca. Previous studies have revealed that radulae can be adapted to the food or the substrate the food lies on, but the real, forces exerted by this organ on substrates and the stresses that are transmitted by the teeth are unknown. Here, we relate physical properties of the radular teeth of (Müller.