410 results match your criteria: "Center for Computational Toxicology and Exposure.[Affiliation]"

Developing Chemical Signatures for Categories of Household Consumer Products Using Suspect Screening Analysis.

Environ Sci Technol

January 2025

Center for Computational Toxicology and Exposure, Office of Research and Development, U.S. Environmental Protection Agency, Research Triangle Park, North Carolina 27711, United States.

Consumer products are a major source of chemicals that may pose a health risk. It is important to understand what chemicals are in these products to evaluate risk and assess new products for uncommon ingredients. Suspect screening analysis (SSA) using two-dimensional gas chromatography-high-resolution-time-of-flight/mass spectrometry (GCxGC-HR-TOF/MS) was applied to 92 consumer products from 5 categories.

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Article Synopsis
  • Gene expression biomarkers can help identify both genotoxic and non-genotoxic carcinogens, which could reduce the need for animal testing.
  • In August 2022, a workshop reviewed current methods for using transcriptomic profiling to detect genotoxic chemicals, examining 1341 papers to find reliable biomarkers.
  • The analysis identified two promising in vivo biomarkers and three in vitro biomarkers that show over 92% predictive accuracy and can be adapted for various testing conditions, with support from workshop participants for their regulatory adoption.
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NIST Mass Spectral Libraries in the Context of the Circular Economy of Plastics.

J Am Soc Mass Spectrom

January 2025

Mass Spectrometry Data Center, Biomolecular Measurement Division, National Institute of Standards and Technology (NIST), Gaithersburg, Maryland, 20899, United States.

Article Synopsis
  • The Mass Spectrometry Data Center (MSDC) is enhancing libraries for identifying plastics-related compounds (PRC) and materials (PRM) as part of NIST's circular economy initiative.
  • To increase the diversity of compounds analyzed, MSDC is utilizing three ionization methods: EI, ESI, and APCI, along with pyrolysis-gas chromatography (py-GC-MS) for solid materials.
  • Collaborating with agencies like the FDA and EPA, they are testing these libraries to address health risks and environmental issues concerning plastics.
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Per- and polyfluoroalkyl substances (PFAS) are widely used persistent synthetic chemicals that have been linked to adverse health effects. While the behavior of PFAS has been evaluated in the environment, our understanding of reaction products in mammalian systems is limited. This study identified biological PFAS transformation products and generated mass spectral libraries to facilitate an automated search and identification.

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Controlled laboratory experiments are often performed on amphibians to establish causality between stressor presence and an adverse outcome. However, in the field, identification of lab-generated biomarkers from single stressors and the interactions of multiple impacts are difficult to discern in an ecological context. The ubiquity of some pesticides and anthropogenic contaminants results in potentially cryptic sublethal effects or synergistic effects among multiple stressors.

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As a part of the International Workshop on Genotoxicity Testing (IWGT) in 2022, a workgroup was formed to evaluate the level of validation and regulatory acceptance of transcriptomic biomarkers that identify genotoxic substances. Several such biomarkers have been developed using various molecular techniques and computational approaches. Within the IWGT workgroup on transcriptomic biomarkers, bioinformatics was a central topic of discussion, focusing on the current approaches used to process the underlying molecular data to distill a reliable predictive signal; that is, a gene set that is indicative of genotoxicity and can then be used in later studies to predict potential DNA damaging properties for uncharacterized chemicals.

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The workshop titled State of the Science on Assessing Developmental Neurotoxicity Using New Approach Methods was co-organized by University of Maryland’s Joint Institute for Food Safety and Applied Nutrition (JIFSAN) and the U.S. Food and Drug Administration’s (FDA) Center for Food Safety and Applied Nutrition (CFSAN; now called the Human Foods Program), and was hosted by FDA in College Park, MD on November 14-15, 2023.

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There is a diversity of chemicals to which humans are potentially exposed. Few of these chemicals have linked human biomonitoring data, and most have very limited neurotoxicity testing. Of particular concern are environmental exposures impacting children, who constitute a population of heightened susceptibility due to rapid neural growth and plasticity, yet lack biomonitoring data compared to other age/population subgroups.

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Discerning Emittable from Extractable Chemicals Identified in Consumer Products by Suspect Screening GCxGC-TOFMS.

Environ Sci Technol

December 2024

Center for Computational Toxicology and Exposure, Office of Research and Development, U.S. Environmental Protection Agency, Research Triangle Park, North Carolina 27711, United States.

Characterization of chemicals in household products is important for understanding this potential source of chemical exposure. Increasingly, suspect screening and nontargeted analysis techniques are used to characterize as many chemical signatures as possible. Solids such as household products are most conveniently prepared using solvent extraction, revealing what chemicals are contained within the product matrix but providing no information about the potential of those chemicals to leave the matrix and cause actual exposure.

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The merging of physiology and toxicokinetics, or pharmacokinetics, with computational modeling to characterize dosimetry has led to major advances for both the chemical and pharmaceutical research arenas. Driven by the mutual need to estimate internal exposures where in vivo data generation was simply not possible, the application of toxicokinetic modeling has grown exponentially in the past 30 years. In toxicology the need has been the derivation of quantitative estimates of toxicokinetic and toxicodynamic variability to evaluate the suitability of the tenfold uncertainty factor employed in risk assessment decision-making.

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Incorporating habitat use and life history to predict PCB residues in wild fish in an urban estuary.

Mar Pollut Bull

December 2024

United States Environmental Protection Agency Office of Research and Development, Center for Computational Toxicology and Exposure, Great Lakes Toxicology and Ecology Division, 6201 Congdon Blvd, Duluth, MN 55804, USA.

Owing to the heterogenous distribution of contaminated sediments in urban estuaries, contaminant residues, such as polychlorinated biphenyls (PCBs), in fish tissue can vary widely. To investigate the relationship between PCBs in fish tissue and heterogeneity of PCBs in sediment, we developed a geospatial Biota-Sediment Accumulation Factor (BSAF) model for an urban estuary. The model predicts whole fish total PCB residues at a scale of 0.

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Article Synopsis
  • Global urbanization is increasing exposure to traffic-related air pollution (TRAP), which is linked to negative health effects, especially in individuals with cardiovascular disease (CVD).
  • This study examined the relationship between living near major roadways and all-cause mortality in three cohorts: a general hospital population, individuals with prior heart attacks, and those with heart failure (HF).
  • Findings indicated that individuals with HF had the highest mortality risks associated with proximity to major roadways, underscoring the need to consider CVD status when evaluating health risks from air pollution.
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There is a pressing need to increase the efficiency and reliability of toxicological safety assessment for protecting human health and the environment. While conventional toxicology tests rely on measuring apical changes in vertebrate models, there is increasing interest in the use of molecular information from animal and in vitro studies to inform safety assessment. One promising and pragmatic application of molecular information involves the derivation of transcriptomic points of departure (tPODs).

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Current methods for cancer risk assessment are resource-intensive and not feasible for most of the thousands of untested chemicals. In earlier studies, we developed a new approach methodology (NAM) to identify liver tumorigens using gene expression biomarkers and associated tumorigenic activation levels (TALs) after short-term exposures in rats. The biomarkers are used to predict the six most common rodent liver cancer molecular initiating events.

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Chemical monitoring studies in North Carolina, USA and Shandong, China have reported detections of perfluoroalkylether carboxylic acids of increasing chain length with ether bonds between each fluorinated carbon. Despite detection there is limited hazard data available to inform risk assessment. Here, we exposed pregnant Sprague-Dawley rats to two of these compounds, perfluoro-3,5,7,9-butaoxadecanoic acid (PFO4DA) and perfluoro-3,5,7,9,11-pentaoxadodecanoic acid (PFO5DoA), from gestation days 18-22 across a series of doses (0.

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Organoid intelligence for developmental neurotoxicity testing.

Front Cell Neurosci

October 2024

Center for Alternatives to Animal Testing, Department of Environmental Health and Engineering, Bloomberg School of Public Health, Johns Hopkins University, Baltimore, MD, United States.

The increasing prevalence of neurodevelopmental disorders has highlighted the need for improved testing methods to determine developmental neurotoxicity (DNT) hazard for thousands of chemicals. This paper proposes the integration of organoid intelligence (OI); leveraging brain organoids to study neuroplasticity into the DNT testing paradigm. OI brings a new approach to measure the impacts of xenobiotics on plasticity mechanisms - a critical biological process that is not adequately covered in current DNT assays.

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Article Synopsis
  • Refining assumptions about the fraction absorbed (Fabs) can enhance the performance of pharmacokinetic models that use in vitro-to-in vivo extrapolation (IVIVE) methods for predicting oral bioavailability (Fbio) of chemicals.
  • In this study, over 400 non-pharmaceuticals were tested for apparent permeability (Papp) using the Caco-2 cell line, leading to the development of a random forest quantitative structure-property relationship (QSPR) model which improved predictions of human bioavailability compared to rat data.
  • The findings were integrated into a high throughput toxicokinetics (HTTK) framework to estimate equivalent doses for bioactivity based on in vitro data, resulting in only minor changes to exposure and bioactivity
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Multiple non-targeted analysis tools were used to look for a broad range of possible chemical contaminants present in surface and drinking water using liquid chromatography separation and high-resolution mass spectrometry detection, including both quadrupole time of flight (Q-ToF) and Orbitrap instruments. Two chromatographic techniques were evaluated on an LC-Q-ToF with electrospray ionization in both positive and negative modes: (1) the traditionally used reverse phase C18 and (2) the hydrophilic interaction liquid chromatography (HILIC) aimed to capture more polar contaminants that may be present in water. Multiple ionization modes were evaluated with an LC-Orbitrap, including electrospray (ESI) and atmospheric pressure chemical ionization (APCI), also in both positive and negative modes.

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Inhalation of ambient particulate matter (PM) and ozone (O) has been associated with increased cardiovascular morbidity and mortality. However, the interactive effects of PM and O on cardiac dysfunction and disease have not been thoroughly examined, especially at a proteomic level. The purpose of this study was to identify and compare proteome changes in spontaneously hypertensive (SH) rats co-exposed to concentrated ambient particulates (CAPs) and O, with a focus on investigating inflammatory and metabolic pathways, which are the two major ones implicated in the pathophysiology of cardiac dysfunction.

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Behavioural analysis has been attracting significant attention as a broad indicator of sub-lethal toxicity and has secured a place as an important subdiscipline in ecotoxicology. Among the most notable characteristics of behavioural research, compared to other established approaches in sub-lethal ecotoxicology (e.g.

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Mining, refining, and QSAR analysing the nanoinformatics in EPA NaKnowBase.

Environ Sci Nano

April 2024

Center for Environmental Measurement and Modeling, Office of Research and Development, U.S. Environmental Protection Agency, 109 T.W. Alexander Drive, Research Triangle Park, NC 27711, USA.

Article Synopsis
  • - Concerns over the safety of engineered nanomaterials (ENMs) are rising as their use expands, prompting the need for research into their potentially harmful effects.
  • - The US EPA's Office of Research and Development created NaKnowBase (NKB), a database that compiles data from various studies on the environmental health and safety impacts of ENMs.
  • - The article details a study that uses quantitative structure-activity relationship (QSAR) analysis and a decision tree method to predict the effects of ENMs on cell viability, with validation through the Jaqpot cloud platform for global collaboration.
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Article Synopsis
  • The study investigates how sunlight interacts with volatile organic compounds (VOCs), particularly those from gasoline vapors, producing harmful byproducts that contribute to air pollution.
  • Researchers found that atmospheres created by irradiating gasoline and certain non-aromatic VOCs were mutagenic, meaning they could potentially cause genetic mutations, while dark atmospheres were not.
  • The findings suggest that while non-aromatic VOCs have a minor role in mutagenicity, combined with aromatic VOCs, they can account for a significant portion of the mutagenic effects of gasoline vapors, highlighting the need for emission reduction strategies to improve air quality and public health.
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A Comparative Study of Phase I and II Hepatic Microsomal Biotransformation of Phenol in Three Species of Salmonidae: Hydroquinone, Catechol, and Phenylglucuronide Formation.

Fishes

July 2024

United States Environmental Protection Agency, Office of Research and Development, Center for Computational Toxicology and Exposure, Great Lakes Toxicology and Ecology Division, 6201 Congdon Boulevard, Duluth, MN 55804, USA.

The biotransformation of phenol at 11 °C was studied using pre-spawn adult rainbow () (RBT), brook () (BKT), and lake trout () (LKT) hepatic microsomal preparations. The incubations were optimized for time, cofactor concentration, pH, and microsomal protein concentration. Formation of Phase I ring-hydroxylation and Phase II glucuronidation metabolites was quantified using HPLC with dual-channel electrochemical and UV detection.

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