Thermal refugia reinforce macroalgal resilience against climate change in the southeastern Bay of Biscay.

Rising global temperatures present unprecedented challenges to marine ecosystems, demanding a profound understanding of their ecological dynamics for effective conservation strategies. Over a comprehensive macroalgal assessment spanning three decades, we investigated the spatiotemporal evolution of shallow-water benthic communities in the southern Bay of Biscay, uncovering climate-resilient areas amidst the ongoing phase shift in the region. Our investigation identified seven locations serving as potential climate refugia, where cold-affinity, canopy-forming macroalgal species persisted and community structure was similar to that observed in 1991.

Neighbourhood benthic configuration reveals hidden co-occurrence social diversity.

Ecological interactions among benthic communities are crucial for shaping marine ecosystems. Understanding these interactions is essential for predicting how ecosystems will respond to environmental changes, invasive species, and conservation management. However, determining the prevalence of species interactions at the community scale is challenging.

Ice phenology interactions with water and air temperatures in high mountain lakes.

Ice phenology is of great importance for the thermal structure of lakes and ponds and the biology of lake species. Under the current climate change conditions, ice-cover duration has been reduced by an advance in ice-off, and a delay in ice-on, and future projections foresee this trend as continuing. Here, we describe the current ice phenology of Pyrenean high mountain lakes and ponds, including ice-cover duration and ice-on and ice-off dates.

The thermal journey of macroalgae: Four decades of temperature-induced changes in the southeastern Bay of Biscay.

Global warming is triggering significant shifts in temperate macroalgal communities worldwide, favoring small, warm-affinity species over large canopy-forming, cold-affinity species. The Cantabrian Sea, a region acutely impacted by climate change, is also witnessing this shift. This study delved into the impacts of increasing sea surface temperature on the subtidal macroalgal communities in the southeastern Bay of Biscay over the last four decades, by using data from the years 1982, 2007, 2014, and 2020.

Short-term response of macroalgal communities to ocean warming in the Southern Bay of Biscay.

Climate change is causing significant shifts in biological communities worldwide, including the degradation of marine communities. Previous research has predicted that southern Bay of Biscay canopy-forming subtidal macroalgal communities will shift into turf-forming Mediterranean-like communities by the end of the century. These predictions were based on a community-environment relationship model that used macroalgal abundance data and IPCC environmental projections.

Colonization-persistence trade-offs in natural bacterial communities.

Fitness equalizing mechanisms, such as trade-offs, are recognized as one of the main factors promoting species coexistence in community ecology. However, they have rarely been explored in microbial communities. Although microbial communities are highly diverse, the coexistence of their multiple taxa is largely attributed to niche differences and high dispersal rates, following the principle 'everything is everywhere, but the environment selects'.

Pulse, Shunt and Storage: Hydrological Contraction Shapes Processing and Export of Particulate Organic Matter in River Networks.

Unlabelled: Streams and rivers act as landscape-scale bioreactors processing large quantities of terrestrial particulate organic matter (POM). This function is linked to their flow regime, which governs residence times, shapes organic matter reactivity and controls the amount of carbon (C) exported to the atmosphere and coastal oceans. Climate change impacts flow regimes by increasing both flash floods and droughts.

Multiple invasions, Wolbachia and human-aided transport drive the genetic variability of Aedes albopictus in the Iberian Peninsula.

The Asian tiger mosquito, Aedes albopictus, is one of the most invasive species in the world. Native to the tropical forests of Southeast Asia, over the past 30 years it has rapidly spread throughout tropical and temperate regions of the world. Its dramatic expansion has resulted in public health concerns as a consequence of its vector competence for at least 16 viruses.

Symbiont transmission in marine sponges: reproduction, development, and metamorphosis.

Marine sponges (phylum Porifera) form symbioses with diverse microbial communities that can be transmitted between generations through their developmental stages. Here, we integrate embryology and microbiology to review how symbiotic microorganisms are transmitted in this early-diverging lineage. We describe that vertical transmission is widespread but not universal, that microbes are vertically transmitted during a select developmental window, and that properties of the developmental microbiome depends on whether a species is a high or low microbial abundance sponge.

Unifying the known and unknown microbial coding sequence space.

Genes of unknown function are among the biggest challenges in molecular biology, especially in microbial systems, where 40-60% of the predicted genes are unknown. Despite previous attempts, systematic approaches to include the unknown fraction into analytical workflows are still lacking. Here, we present a conceptual framework, its translation into the computational workflow AGNOSTOS and a demonstration on how we can bridge the known-unknown gap in genomes and metagenomes.

A spatially-modelled snapshot of future marine macroalgal assemblages in southern Europe: Towards a broader Mediterranean region?

The effect of climate change on species distribution has been the focus of much recent research, but the community-level approach remains poorly studied. Our investigation applies a present assemblage-environment relationship model for the first time to the predict changes in subtidal macroalgal assemblages in the northern Iberian Peninsula under the RCP 4.5 and RCP 8.

Multi-species prey dynamics influence local survival in resident and wintering generalist predators.

Stochasticity in food availability influences vital rates such as survival and fertility. Life-history theory predicts that in long-lived organisms, survival should be buffered against environmental stochasticity showing little temporal variability. Furthermore, to optimize survival prospects, many animal species perform migrations to wintering areas where food availability is larger.

The Stochastic Nature of Functional Responses.

Functional responses are non-linear functions commonly used to describe the variation in the rate of consumption of resources by a consumer. They have been widely used in both theoretical and empirical studies, but a comprehensive understanding of their parameters at different levels of description remains elusive. Here, by depicting consumers and resources as stochastic systems of interacting particles, we present a minimal set of reactions for consumer resource dynamics.

Assessing social-ecological vulnerability of coastal systems to fishing and tourism.

Detecting areas with high social-ecological vulnerability (SEV) is essential to better inform management interventions for building resilience in coastal systems. The SEV framework, developed by the Intergovernmental Panel on Climate Change, is a robust method to identify SEV of tropical coastal systems to climate change. Yet, the application of this framework to temperate regions and other drivers of change remains underexplored.

The characteristic time of ecological communities.

A simple description of temporal dynamics of ecological communities may help us understand how community assembly proceeds, predict ecological responses to environmental disturbances, and improve the performance of biological conservation actions. Although community changes take place at multiple temporal scales, the variation of species composition and richness over time across communities and habitats shows general patterns that may potentially reveal the main drivers of community dynamics. We used the simplest stochastic model of island biogeography to propose two quantities to characterize community dynamics: the community characteristic time, as a measure of the typical time scale of species-richness change, and the characteristic Jaccard index, as a measure of temporal β diversity, that is, the variation of community composition over time.

Marine biomonitoring with eDNA: Can metabarcoding of water samples cut it as a tool for surveying benthic communities?

In the marine realm, biomonitoring using environmental DNA (eDNA) of benthic communities requires destructive direct sampling or the setting-up of settlement structures. Comparatively much less effort is required to sample the water column, which can be accessed remotely. In this study we assess the feasibility of obtaining information from the eukaryotic benthic communities by sampling the adjacent water layer.

Cooperation between passive and active silicon transporters clarifies the ecophysiology and evolution of biosilicification in sponges.

The biological utilization of dissolved silicon (DSi) influences ocean ecology and biogeochemistry. In the deep sea, hexactinellid sponges are major DSi consumers that remain poorly understood. Their DSi consumption departs from the Michaelis-Menten kinetics of shallow-water demosponges and appears particularly maladapted to incorporating DSi from the modest concentrations typical of the modern ocean.

Drought alters the biogeochemistry of boreal stream networks.

Drought is a global phenomenon, with widespread implications for freshwater ecosystems. While droughts receive much attention at lower latitudes, their effects on northern river networks remain unstudied. We combine a reach-scale manipulation experiment, observations during the extreme 2018 drought, and historical monitoring data to examine the impact of drought in northern boreal streams.

Tuning up microbiome analysis to monitor WWTPs' biological reactors functioning.

Wastewater treatment plants (WWTPs) are necessary to protect ecosystems quality and human health. Their function relies on the degradation of organic matter and nutrients from a water influent, prior to the effluent release into the environment. In this work we studied the bacterial community dynamics of a municipal WWTP with a membrane bioreactor through 16S rRNA gene sequencing.

Helping decision making for reliable and cost-effective 2b-RAD sequencing and genotyping analyses in non-model species.

High-throughput sequencing has revolutionized population and conservation genetics. RAD sequencing methods, such as 2b-RAD, can be used on species lacking a reference genome. However, transferring protocols across taxa can potentially lead to poor results.

Digging the diversity of Iberian bait worms Marphysa (Annelida, Eunicidae).

During a visit to polychaete-rearing facilities in the vicinity of Bay of Cádiz (SW Iberian Peninsula, Atlantic Ocean), we sampled two populations of Marphysa (Annelida, Eunicidae) originally occurring at nearby intertidal soft bottoms, one being more than twice as long as the other at the same age. We analysed them using partial sequences of two mitochondrial genes, 16S rDNA and Cytochrome Oxidase I, and classical morphological observations. Our molecular results confirmed that the two populations corresponded to two different species, with PTP species delimitation values ranging from 0.

The method controls the story - Sampling method impacts on the detection of pore-water nitrogen concentrations in streambeds.

Biogeochemical gradients in streambeds are steep and can vary over short distances often making adequate characterisation of sediment biogeochemical processes challenging. This paper provides an overview and comparison of streambed pore-water sampling methods, highlighting their capacity to address gaps in our understanding of streambed biogeochemical processes. This work reviews and critiques available pore-water sampling techniques to characterise streambed biogeochemical conditions, including their characteristic spatial and temporal resolutions, and associated advantages and limitations.

Marine protected areas are more effective but less reliable in protecting fish biomass than fish diversity.

Marine protected areas (MPAs) provide multiple conservation benefits, thus raising the question of how good and consistent they are at their roles. Here, we quantified three components, namely, diversity, biomass, and other relevant variables, in numerous protected and unprotected areas across four marine ecoregions in south-western Europe. We created a "global conservation status index" (CSI) as the sum of CSI, CSI, and CSI.