Fully automatic deep convolutional approaches for the screening of neurodegeneratives diseases using multi-view OCT images.

The prevalence of neurodegenerative diseases (NDDs) such as Alzheimer's (AD), Parkinson's (PD), Essential tremor (ET), and Multiple Sclerosis (MS) is increasing alongside the aging population. Recent studies suggest that these disorders can be identified through retinal imaging, allowing for early detection and monitoring via Optical Coherence Tomography (OCT) scans. This study is at the forefront of research, pioneering the application of multi-view OCT and 3D information to the neurological diseases domain.

Case report of plastic nurdles pollution in Galicia (NW Atlantic) following the Toconao's spill in December 2023: The VIEIRA Collaborative.

Plastic nurdles pose a significant environmental threat due to recurrent accidental spills into marine ecosystems. This report examines the nurdle pollution over the 1498 km of the Galician coastline (Spain) following the spill of 25 t of nurdles into the Northwest Atlantic after the loss of six containers from the Toconao vessel in December 2023. This accident highlights the urgent need for proactive, effective measures in maritime transport to prevent and mitigate such environmental catastrophes.

Prediction of compound-target interaction using several artificial intelligence algorithms and comparison with a consensus-based strategy.

For understanding a chemical compound's mechanism of action and its side effects, as well as for drug discovery, it is crucial to predict its possible protein targets. This study examines 15 developed target-centric models (TCM) employing different molecular descriptions and machine learning algorithms. They were contrasted with 17 third-party models implemented as web tools (WTCM).

MATEO: intermolecular α-amidoalkylation theoretical enantioselectivity optimization. Online tool for selection and design of chiral catalysts and products.

The enantioselective Brønsted acid-catalyzed α-amidoalkylation reaction is a useful procedure is for the production of new drugs and natural products. In this context, Chiral Phosphoric Acid (CPA) catalysts are versatile catalysts for this type of reactions. The selection and design of new CPA catalysts for different enantioselective reactions has a dual interest because new CPA catalysts (tools) and chiral drugs or materials (products) can be obtained.

VIBES: A consensus subtyping of the vaginal microbiota reveals novel classification criteria.

This study aimed to develop a robust classification scheme for stratifying patients based on vaginal microbiome. By employing consensus clustering analysis, we identified four distinct clusters using a cohort that includes individuals diagnosed with Bacterial Vaginosis (BV) as well as control participants, each characterized by unique patterns of microbiome species abundances. Notably, the consistent distribution of these clusters was observed across multiple external cohorts, such as SRA022855, SRA051298, PRJNA208535, PRJNA797778, and PRJNA302078 obtained from public repositories, demonstrating the generalizability of our findings.

Influence of Storage Time on the DNA Integrity and Viability of Spermatozoa of the Spider Crab .

Natural populations of the spider crab constitute a fishery resource of great economic importance in many countries. As in the rest of eubrachyurans, the females of this species have ventral-type seminal receptacles where they store sperm from copulations. Sperm can be stored in these structures for months and even years before egg fertilisation, with the consequent degradation of the sperm cells during the time.

Generation of synthetic intermediate slices in 3D OCT cubes for improving pathology detection and monitoring.

OCT is a non-invasive imaging technique commonly used to obtain 3D volumes of the ocular structure. These volumes allow the monitoring of ocular and systemic diseases through the observation of subtle changes in the different structures present in the eye. In order to observe these changes it is essential that the OCT volumes have a high resolution in all axes, but unfortunately there is an inverse relationship between the quality of the OCT images and the number of slices of the cube.

Wi-Fi Handshake: analysis of password patterns in Wi-Fi networks.

This article seeks to provide a snapshot of the security of Wi-Fi access points in the metropolitan area of A Coruña. First, we discuss the options for obtaining a tool that allows the collection and storage of auditable information from Wi-Fi networks, from location to signal strength, security protocol or the list of connected clients. Subsequently, an analysis is carried out aimed at identifying password patterns in Wi-Fi networks with WEP, WPA and WPA2 security protocols.

Fully automatic segmentation and monitoring of choriocapillaris flow voids in OCTA images.

Optical coherence tomography angiography (OCTA) is a non-invasive ophthalmic imaging modality that is widely used in clinical practice. Recent technological advances in OCTA allow imaging of blood flow deeper than the retinal layers, at the level of the choriocapillaris (CC), where a granular image is obtained showing a pattern of bright areas, representing blood flow, and a pattern of small dark regions, called flow voids (FVs). Several clinical studies have reported a close correlation between abnormal FVs distribution and multiple diseases, so quantifying changes in FVs distribution in CC has become an area of interest for many clinicians.

A review on machine learning approaches and trends in drug discovery.

Drug discovery aims at finding new compounds with specific chemical properties for the treatment of diseases. In the last years, the approach used in this search presents an important component in computer science with the skyrocketing of machine learning techniques due to its democratization. With the objectives set by the Precision Medicine initiative and the new challenges generated, it is necessary to establish robust, standard and reproducible computational methodologies to achieve the objectives set.

Machine learning analysis of TCGA cancer data.

In recent years, machine learning (ML) researchers have changed their focus towards biological problems that are difficult to analyse with standard approaches. Large initiatives such as The Cancer Genome Atlas (TCGA) have allowed the use of omic data for the training of these algorithms. In order to study the state of the art, this review is provided to cover the main works that have used ML with TCGA data.

Robust multimodal registration of fluorescein angiography and optical coherence tomography angiography images using evolutionary algorithms.

Optical coherence tomography angiography (OCTA) and fluorescein angiography (FA) are two different vascular imaging modalities widely used in clinical practice to diagnose and grade different relevant retinal pathologies. Although each of them has its advantages and disadvantages, the joint analysis of the images produced by both techniques to analyze a specific area of the retina is of increasing interest, given that they provide common and complementary visual information. However, in order to facilitate this analysis task, a previous registration of the pair of FA and OCTA images is desirable in order to superimpose their common areas and focus the gaze on the regions of interest.

Random forest-based prediction of stroke outcome.

We research into the clinical, biochemical and neuroimaging factors associated with the outcome of stroke patients to generate a predictive model using machine learning techniques for prediction of mortality and morbidity 3-months after admission. The dataset consisted of patients with ischemic stroke (IS) and non-traumatic intracerebral hemorrhage (ICH) admitted to Stroke Unit of a European Tertiary Hospital prospectively registered. We identified the main variables for machine learning Random Forest (RF), generating a predictive model that can estimate patient mortality/morbidity according to the following groups: (1) IS + ICH, (2) IS, and (3) ICH.

Identification of predictive factors of the degree of adherence to the Mediterranean diet through machine-learning techniques.

Food consumption patterns have undergone changes that in recent years have resulted in serious health problems. Studies based on the evaluation of the nutritional status have determined that the adoption of a food pattern-based primarily on a Mediterranean diet (MD) has a preventive role, as well as the ability to mitigate the negative effects of certain pathologies. A group of more than 500 adults aged over 40 years from our cohort in Northwestern Spain was surveyed.

Comparison of Outlier-Tolerant Models for Measuring Visual Complexity.

Providing the visual complexity of an image in terms of impact or aesthetic preference can be of great applicability in areas such as psychology or marketing. To this end, certain areas such as Computer Vision have focused on identifying features and computational models that allow for satisfactory results. This paper studies the application of recent ML models using input images evaluated by humans and characterized by features related to visual complexity.

A Genetic Programming-Based Low-Level Instructions Robot for Realtimebattle.

RealTimeBattle is an environment in which robots controlled by programs fight each other. Programs control the simulated robots using low-level messages (e.g.

Joint Diabetic Macular Edema Segmentation and Characterization in OCT Images.

The automatic identification and segmentation of edemas associated with diabetic macular edema (DME) constitutes a crucial ophthalmological issue as they provide useful information for the evaluation of the disease severity. According to clinical knowledge, the DME disorder can be categorized into three main pathological types: serous retinal detachment (SRD), cystoid macular edema (CME), and diffuse retinal thickening (DRT). The implementation of computational systems for their automatic extraction and characterization may help the clinicians in their daily clinical practice, adjusting the diagnosis and therapies and consequently the life quality of the patients.

Computational assessment of the retinal vascular tortuosity integrating domain-related information.

The retinal vascular tortuosity presents a valuable potential as a clinical biomarker of many relevant vascular and systemic diseases. Commonly, the existent approaches face the tortuosity quantification by means of fully mathematical representations of the vessel segments. However, the specialists, based on their diagnostic experience, commonly analyze additional domain-related information that is not represented in these mathematical metrics of reference.

Deep multi-instance heatmap regression for the detection of retinal vessel crossings and bifurcations in eye fundus images.

Background And Objectives: The analysis of the retinal vasculature plays an important role in the diagnosis of many ocular and systemic diseases. In this context, the accurate detection of the vessel crossings and bifurcations is an important requirement for the automated extraction of relevant biomarkers. In that regard, we propose a novel approach that addresses the simultaneous detection of vessel crossings and bifurcations in eye fundus images.

A Novel Automatic Method to Estimate Visual Acuity and Analyze the Retinal Vasculature in Retinal Vein Occlusion Using Swept Source Optical Coherence Tomography Angiography.

The assessment of vascular biomarkers and their correlation with visual acuity is one of the most important issues in the diagnosis and follow-up of retinal vein occlusions (RVOs). The high workloads of clinical practice make it necessary to have a fast, objective, and automatic method to analyze image features and correlate them with visual function. The aim of this study is to propose a fully automatic system which is capable of estimating visual acuity (VA) in RVO eyes, based only on information obtained from macular optical coherence tomography angiography (OCTA) images.

Automatic identification and characterization of the epiretinal membrane in OCT images.

Optical coherence tomography (OCT) is a medical image modality that is used to capture, non-invasively, high-resolution cross-sectional images of the retinal tissue. These images constitute a suitable scenario for the diagnosis of relevant eye diseases like the vitreomacular traction or the diabetic retinopathy. The identification of the epiretinal membrane (ERM) is a relevant issue as its presence constitutes a symptom of diseases like the macular edema, deteriorating the vision quality of the patients.

Artery/Vein Vessel Tree Identification in Near-Infrared Reflectance Retinographies.

An accurate identification of the retinal arteries and veins is a relevant issue in the development of automatic computer-aided diagnosis systems that facilitate the analysis of different relevant diseases that affect the vascular system as diabetes or hypertension, among others. The proposed method offers a complete analysis of the retinal vascular tree structure by its identification and posterior classification into arteries and veins using optical coherence tomography (OCT) scans. These scans include the near-infrared reflectance retinography images, the ones we used in this work, in combination with the corresponding histological sections.

Robust segmentation of retinal layers in optical coherence tomography images based on a multistage active contour model.

Optical Coherence Tomography (OCT) constitutes an imaging technique that is increasing its popularity in the ophthalmology field, since it offers a more complete set of information about the main retinal structures. Hence, it offers detailed information about the eye fundus morphology, allowing the identification of many intraretinal pathological signs. For that reason, over the recent years, Computer-Aided Diagnosis (CAD) systems have spread to work with this image modality and analyze its information.

Automatic segmentation of the foveal avascular zone in ophthalmological OCT-A images.

Angiography by Optical Coherence Tomography (OCT-A) is a non-invasive retinal imaging modality of recent appearance that allows the visualization of the vascular structure at predefined depths based on the detection of the blood movement through the retinal vasculature. In this way, OCT-A images constitute a suitable scenario to analyze the retinal vascular properties of regions of interest as is the case of the macular area, measuring the characteristics of the foveal vascular and avascular zones. Extracted parameters of this region can be used as prognostic factors that determine if the patient suffers from certain pathologies (such as diabetic retinopathy or retinal vein occlusion, among others), indicating the associated pathological degree.

Retinal vascular tortuosity assessment: inter-intra expert analysis and correlation with computational measurements.

Background: The retinal vascular tortuosity can be a potential indicator of relevant vascular and non-vascular diseases. However, the lack of a precise and standard guide for the tortuosity evaluation hinders its use for diagnostic and treatment purposes. This work aims to advance in the standardization of the retinal vascular tortuosity as a clinical biomarker with diagnostic potential, allowing, thereby, the validation of objective computational measurements on the basis of the entire spectrum of the expert knowledge.