45 results match your criteria: "CEIT and Tecnun (University of Navarra)[Affiliation]"

. fowleri, a protozoa belonging to the free-living amoeba group, is the causative agent of a central nervous system affecting disease that is fatal in more than the 95% of the reported cases. This parasite can be found in warm water bodies such as lakes, rivers or inadequately disinfected swimming pools.

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Ammonia ion removal and recovery via an ion-exchange process using zeolites is a promising alternative to traditional biological treatments. The analysis of its efficiency is not straightforward as it depends on various factors, such as the cation exchange capacity of the zeolite, amount of zeolite available, initial ammonia concentration, contact time, ammonia speciation depending on pH or the presence of competing ions. Mathematical modelling and simulation tools are very useful to analyse the effect of different operational conditions on the efficiency and optimal operation of the process.

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Objectives: The method of drug delivery directly into the cochlea with an implantable pump connected to a CI electrode array ensures long-term delivery and effective dose control, and also provides the possibility to use different drugs. The objective is to develop a model of inner ear pharmacokinetics of an implanted cochlea, with the delivery of FITC-Dextran, in the non-human primate model.

Design: A preclinical cochlear electrode array (CI Electrode Array HL14DD, manufactured by Cochlear Ltd.

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The future of WRRF modelling - outlook and challenges.

Water Sci Technol

January 2019

University of California, Irvine, Civil & Environmental Engineering Dept., Water-Energy Nexus Center, Irvine, CA 92697-2175, USA.

The wastewater industry is currently facing dramatic changes, shifting away from energy-intensive wastewater treatment towards low-energy, sustainable technologies capable of achieving energy positive operation and resource recovery. The latter will shift the focus of the wastewater industry to how one could manage and extract resources from the wastewater, as opposed to the conventional paradigm of treatment. Debatable questions arise: can the more complex models be calibrated, or will additional unknowns be introduced? After almost 30 years using well-known International Water Association (IWA) models, should the community move to other components, processes, or model structures like 'black box' models, computational fluid dynamics techniques, etc.

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Phosphorus has been considered as a pollutant to be removed from the wastewater. In the last years, however, it has been considered a valuable asset that needs to be recovered due to its shortage in nature. The study of optimum phosphorus management in wastewater treatment plants is not straightforward, due to the complexity of technologies and configurations that may be applied for phosphorus removal and recovery.

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This paper introduces a new mathematical model built under the PC-PWM methodology to describe the aeration process in a full-scale WWTP. This methodology enables a systematic and rigorous incorporation of chemical and physico-chemical transformations into biochemical process models, particularly for the description of liquid-gas transfer to describe the aeration process. The mathematical model constructed is able to reproduce biological COD and nitrogen removal, liquid-gas transfer and chemical reactions.

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Force Triggers YAP Nuclear Entry by Regulating Transport across Nuclear Pores.

Cell

November 2017

Institute for Bioengineering of Catalonia (IBEC), The Barcelona Institute of Science and Technology (BIST), 08028 Barcelona, Spain; University of Barcelona, 08028 Barcelona, Spain. Electronic address:

YAP is a mechanosensitive transcriptional activator with a critical role in cancer, regeneration, and organ size control. Here, we show that force applied to the nucleus directly drives YAP nuclear translocation by decreasing the mechanical restriction of nuclear pores to molecular transport. Exposure to a stiff environment leads cells to establish a mechanical connection between the nucleus and the cytoskeleton, allowing forces exerted through focal adhesions to reach the nucleus.

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This study explored the volatile fatty acid (VFA) production potential of seven waste streams from urban and agroindustrial sources. For that purpose, batch assays were performed under acidic (pH 5.5) and alkaline (pH 10) conditions at both mesophilic (35°C) and thermophilic (55°C) temperature.

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Improved simulation based HR-EBSD procedure using image gradient based DIC techniques.

Ultramicroscopy

November 2017

Université catholique de Louvain, Institute of Mechanics, Materials and Civil Engineering, IMAP, Place Sainte Barbe 2, Louvain-la-Neuve B-1348, Belgium.

Conventional HR-EBSD is attracting much interest due to its ability of measuring relative crystal misorientations and microstresses with great accuracy. However, this technique needs the use of simulated patterns in order to get absolute values of crystal orientation and stresses and thus expand its use to intergranular analyses. Simulation-based approaches have shown many limitations due to the poor correlation with the real patterns specially when Bragg simulations are considered.

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This paper proposes a model-based methodology that allows synthesising the most appropriate strategies for optimising the operation of wastewater treatment plants (WWTPs). The methodology is applied with the aim of maximising the nitrogen removal in membrane bioreactors (MBRs). The proposed procedure is based on a systematic approach composed of four steps.

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Article Synopsis
  • Microfluidic devices help scientists study how lung cancer cells move in different environments, like how they behave in small tubes filled with special jelly-like materials.
  • The study shows that the way cancer cells move changes depending on the type of jelly they are in; sometimes they move faster, and sometimes slower, depending on how thick the jelly is.
  • This research can help create better ways to test treatments for cancer by using smart tools that can control the environment for the cells, making it easier to understand how to fight the disease.
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Motivation: Gene Essentiality Analysis based on Flux Balance Analysis (FBA-based GEA) is a promising tool for the identification of novel metabolic therapeutic targets in cancer. The reconstruction of cancer-specific metabolic networks, typically based on gene expression data, constitutes a sensible step in this approach. However, to our knowledge, no extensive assessment on the influence of the reconstruction process on the obtained results has been carried out to date.

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This paper presents an ultra low-power and low-voltage pulse-width modulation based ratiometric capacitive sensor interface. The interface was designed and fabricated in a standard 90 nm CMOS 1P9M technology. The measurements show an effective resolution of 10 bits using 0.

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This paper introduces a new general methodology for incorporating physico-chemical and chemical transformations into multi-phase wastewater treatment process models in a systematic and rigorous way under a Plant-Wide modelling (PWM) framework. The methodology presented in this paper requires the selection of the relevant biochemical, chemical and physico-chemical transformations taking place and the definition of the mass transport for the co-existing phases. As an example a mathematical model has been constructed to describe a system for biological COD, nitrogen and phosphorus removal, liquid-gas transfer, precipitation processes, and chemical reactions.

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Couple stresses and the fracture of rock.

Philos Trans A Math Phys Eng Sci

March 2015

CEIT and Tecnun (University of Navarra), P. Manuel de Lardizabal 15, 20018 San Sebastian, Spain.

An assessment is made here of the role played by the micropolar continuum theory on the cracked Brazilian disc test used for determining rock fracture toughness. By analytically solving the corresponding mixed boundary-value problems and employing singular-perturbation arguments, we provide closed-form expressions for the energy release rate and the corresponding stress-intensity factors for both mode I and mode II loading. These theoretical results are augmented by a set of fracture toughness experiments on both sandstone and marble rocks.

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Context-specific metabolic network reconstruction of a naphthalene-degrading bacterial community guided by metaproteomic data.

Bioinformatics

June 2015

CEIT and Tecnun (University of Navarra), San Sebastián, Spain, CSIC, Institute of Catalysis, Madrid, Spain, Helmholtz Centre for Environmental Research, Department of Proteomics, Leipzig, Germany, Área de Microbiología, IUBA, Universidad de Oviedo, Oviedo, Spain, Centro de Metabolómica y Bioanálisis (CEMBIO), Facultad de Farmacia, Universidad CEU San Pablo, Campus Monteprincipe, Boadilla del Monte, Madrid, Spain, Department of Metabolomics, UFZ-Helmholtz-Zentrum für Umweltforschung GmbH, Leipzig, Germany and Department of Chemistry and Bioscience, Aalborg University, Aalborg, Denmark.

Motivation: With the advent of meta-'omics' data, the use of metabolic networks for the functional analysis of microbial communities became possible. However, while network-based methods are widely developed for single organisms, their application to bacterial communities is currently limited.

Results: Herein, we provide a novel, context-specific reconstruction procedure based on metaproteomic and taxonomic data.

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Medical images are being studied to analyse the brain in neurological disorders. Measurements extracted from Diffusion tensor image (DTI) such as Fractional Anisotropy (FA) describe the brain changes caused by diseases. However, there is no single best method for the quantitative brain analysis.

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This paper describes the design, implementation and validation of a sensitive and integral technology solution for endotoxin detection. The unified and portable platform is based on the electrochemical detection of endotoxins using a synthetic peptide immobilized on a thin-film biosensor. The work covers the fabrication of an optimized sensor, the biofunctionalization protocol and the design and implementation of the measuring and signalling elements (a microfluidic chamber and a portable potentiostat-galvanostat), framed ad hoc for this specific application.

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Stabilisation and biological nitrogen removal (BNR) of anaerobically digested sewage sludge were studied in a post-aeration reactor at pilot scale working under alternating anoxic-aerobic conditions. Digested sludge came from a two-stage anaerobic digestion (thermophilic + mesophilic). The best post-aerator performance was achieved when working at an HRT of 10 days (4 days aerobic; dissolved oxygen of 1.

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An automatic tool to facilitate the statistical group analysis of DTI.

Comput Biol Med

October 2014

CEIT and Tecnun University of Navarra, Paseo Manuel Lardizabal 15, 20018 San Sebastián, Spain. Electronic address:

Background: Users may have difficulty calculating DTI group statistics since they need to master several complex tools that require high user intervention. A tool called DTIStatistics for the automatic and easy calculation of DTI group statistics was developed to reduce analysis times and possible errors.

Methods: The proposed software was designed by using a user-centred methodology in which we performed an iterative usability evaluation with an expert committee.

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This work presents an automatic method for distortion correction and calibration of intra-operative spine X-ray images, a fundamental step for the use of this modality in computer and robotic assisted surgeries. Our method is based on a prototype calibration drum, attached to the c-arm intensifier during the intervention. The projections of its embedded fiducial beads onto the X-ray images are segmented by the proposed method, which uses its calculated centroids to undo the distortion and, afterwards, calibrate the c-arm.

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This paper presents a new modelling methodology for dynamically predicting the heat produced or consumed in the transformations of any biological reactor using Hess's law. Starting from a complete description of model components stoichiometry and formation enthalpies, the proposed modelling methodology has integrated successfully the simultaneous calculation of both the conventional mass balances and the enthalpy change of reaction in an expandable multi-phase matrix structure, which facilitates a detailed prediction of the main heat fluxes in the biochemical reactors. The methodology has been implemented in a plant-wide modelling methodology in order to facilitate the dynamic description of mass and heat throughout the plant.

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Tissue rigidity regulates processes in development, cancer and wound healing. However, how cells detect rigidity, and thereby modulate their behaviour, remains unknown. Here, we show that sensing and adaptation to matrix rigidity in breast myoepithelial cells is determined by the bond dynamics of different integrin types.

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The paper presents a systematic study of simulations, using a previously calibrated Colloid model, from which it was found that: (i) for pure moving-bed biofilm reactor (MBBR) processes with tertiary nitrification conditions (no influent chemical oxygen demand (COD)), dissolved oxygen = 5 mg/L and residual NH4-N > 4 mgN/L, a nitrification rate of 1.2 gN/(m(2)d) was obtained at 10 °C. This rate decreases sharply when residual NH4-N is lower than 2 mgN/L, (ii) for MBBR systems with predenitrification-nitrification zones and COD in the influent (soluble and particulate), the nitrification rate (0.

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Heterogeneous micromechanical properties of the extracellular matrix in healthy and infarcted hearts.

Acta Biomater

July 2014

Unit of Biophysics and Bioengineering, School of Medicine, University of Barcelona, 08036 Barcelona, Spain; Institute for Bioengineering of Catalonia, 08028 Barcelona, Spain; Ciber Enfermedades Respiratorias (CIBERES), 07110 Bunyola, Spain. Electronic address:

Infarcted hearts are macroscopically stiffer than healthy organs. Nevertheless, although cell behavior is mediated by the physical features of the cell niche, the intrinsic micromechanical properties of healthy and infarcted heart extracellular matrix (ECM) remain poorly characterized. Using atomic force microscopy, we studied ECM micromechanics of different histological regions of the left ventricle wall of healthy and infarcted mice.

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