22,433 results match your criteria: "CA 95616; and Santa Fe Institute[Affiliation]"

Inversions encounter relaxed genetic constraints and balance birth and death of TPS genes in Curcuma.

Nat Commun

October 2024

Shenzhen Branch, Guangdong Laboratory of Lingnan Modern Agriculture, Key Laboratory of Synthetic Biology, Ministry of Agriculture and Rural Affairs, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, 518120, China.

Article Synopsis
  • - The study examines how genomic inversions in three Curcuma species (turmeric, hidden ginger, and Siam tulip) influence biochemical traits and suggests these inversions are not adaptive due to relaxed genetic constraints.
  • - Inversions in Curcuma have higher long terminal repeat content and lower expression levels, and genetic analysis shows a depletion of beneficial SNPs along with an increase in harmful mutations within these inversions.
  • - The research indicates that genes within inversions, such as terpene synthase (TPS) genes, often turn into pseudogenes, impacting terpenoid production and highlighting inversions as a balancing factor rather than a beneficial mutation in these species.
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Maximizing biological insights from instruments attached to animals.

Trends Ecol Evol

January 2025

Department of Ecology and Evolutionary Biology, University of California Santa Cruz, 130 McAllister Way, Santa Cruz, CA 95060, USA.

Instruments attached to animals ('biologgers') have facilitated extensive discoveries about the patterns, causes, and consequences of animal behavior. Here, we present examples of how biologging can deepen our fundamental understanding of ecosystems and our applied understanding of global change impacts by enabling tests of ecological theory. Applying the iterative process of science to biologging has enabled a diverse set of insights, including social and experiential learning in long-distance migrants, state-dependent risk aversion in foraging predators, and resource abundance driving movement across taxa.

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Multienvironment trials (METs) are crucial for identifying varieties that perform well across a target population of environments. However, METs are typically too small to sufficiently represent all relevant environment-types, and face challenges from changing environment-types due to climate change. Statistical methods that enable prediction of variety performance for new environments beyond the METs are needed.

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Article Synopsis
  • The relationship between thermodynamics and computation has fascinated scientists since the 19th century, but its significance has grown due to the rising energy costs of digital devices.
  • Real-world computers, including biological ones like brains, operate under various physical constraints, which impact their thermodynamic dynamics and efficiency.
  • The emerging field of stochastic thermodynamics offers new analytical techniques to explore how these constraints affect the fundamental thermodynamic properties of systems performing computation.
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A new type of label-free electrochemical immunosensor for the high-sensitivity determination of parathion was developed based on the oriented immobilization of nanobody (VHH9) on a gold nanoparticle-loaded polyvinyl alcohol/citric acid nanofiber membrane-modified electrode. The morphology characterization and assembly process of the modified materials were investigated using scanning electron microscopy (SEM) and electrochemical impedance spectroscopy (EIS). Under the optimum conditions, the label-free electrochemical immunosensor for parathion exhibited a linear range of 0.

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Orchestrating ROS regulation: coordinated post-translational modification switches in NADPH oxidases.

New Phytol

January 2025

State Key Laboratory of Plant Environmental Resilience, College of Biological Sciences, China Agricultural University, Beijing, 100193, China.

Reactive oxygen species (ROS) are among the most important signaling molecules, playing a significant role in plant growth, development, and responses to various environmental stresses. Respiratory burst oxidase homologs (RBOHs) are key enzymes in ROS production. Plants tightly regulate the activation and deactivation of RBOHs through various post-translational modifications (PTMs), including phosphorylation, ubiquitination, S-nitrosylation, and persulfidation.

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In spatio-temporal plant monitoring, optical sensing (including hyperspectral imaging), is being deployed to, non-invasively, detect and diagnose plant responses to abiotic and biotic stressors. Early and accurate detection and diagnosis of stressors are key objectives. Level of radiometric repeatability of optical sensing data and ability to accurately detect and diagnose biotic stress are inversely correlated.

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Changes in climate and land use are the most often mentioned factors responsible for the current decline in species diversity. To reduce the effect of these factors, we need reliable predictions of future species distributions. This is usually done by utilizing species distribution models (SDMs) based on expected climate.

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Voltage-gated sodium (Na) channels are vital regulators of electrical activity in excitable cells, playing critical roles in generating and propagating action potentials. Given their importance in physiology, Na channels are key therapeutic targets for treating numerous conditions, yet developing subtype-selective drugs remains challenging due to the high sequence and structural conservation among Na family members. Recent advances in cryo-electron microscopy have resolved nearly all human Na channels, providing valuable insights into their structure and function.

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Intra/extracellular electron transfer and metagenomic analysis elucidated the roles of magnetic iron powder (FeO) on mixotrophic denitrification system.

Environ Res

December 2024

College of Environmental Science and Engineering, Ocean University of China, Qingdao, 266100, China; Key Laboratory of Marine Environmental and Ecology, Ministry of Education, Ocean University of China, Qingdao, 266100, China. Electronic address:

Elemental iron provides a viable strategy to improve the denitrification efficiency by expediting electron transport. However, the roles of magnetic iron powder (FeO) on mixotrophic denitrification remains unknown. In this study, the intra/extracellular electron transfer (IET/EET) and microbial metabolism mechanisms were explored in a FeO-mediated sulfide-autotrophic and heterotrophic denitrification system.

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Environmental justice of Texas recreational water quality - The disproportionate E. coli levels and trends.

J Environ Manage

November 2024

Key Laboratory of Water Cycle and Related Land Surface Processes, Institute of Geographic Sciences and Natural Resources Research, Chinese Academy of Sciences, Beijing, 100101, China.

The presence of pathogens is one of the leading causes of stream water quality impairment in the US. Escherichia coli (E. coli) is a fecal pathogen indicator and also signals the presence of more pathogenic microbes.

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Antimicrobial susceptibility profiles among commensal Mannheimia haemolytica and Pasteurella multocida isolated from apparently healthy sheep processed in California: Results from a cross-sectional pilot study.

Prev Vet Med

December 2024

California Department of Food and Agriculture, Antimicrobial Use and Stewardship Program, 1220 N St, Sacramento, CA 95814, USA. Electronic address:

Article Synopsis
  • Antimicrobial resistance (AMR) poses a significant challenge in treating bacterial infections in humans and animals, particularly in food-producing species like sheep, where data on bacterial susceptibility is limited.
  • A study sampled the upper respiratory tracts of 620 sheep in California to analyze the susceptibility of the bacteria Mannheimia haemolytica and Pasteurella multocida, often linked to ovine respiratory disease (ORD).
  • Results showed a 55.3% recovery rate of the target bacteria, with M. haemolytica exhibiting notable resistance to penicillin, while P. multocida was mostly susceptible, highlighting critical gaps in antimicrobial stewardship in veterinary practices.
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Vector Competence of from São Tomé and Príncipe for West Nile Virus Transmission.

Microorganisms

October 2024

Global Health and Tropical Medicine (GHTM), Associate Laboratory in Translation and Innovation Towards Global Health, LA-REAL, Instituto de Higiene e Medicina Tropical (IHMT), Universidade Nova de Lisboa, UNL, Rua da Junqueira 100, 1349-008 Lisboa, Portugal.

The global distribution of mosquitoes, particularly in tropical regions, poses a significant public health risk due to their apparent ability to transmit arboviruses such as West Nile virus (WNV). This study aimed to evaluate the vector competence of from São Tomé and Príncipe (STP) for the transmission of the WNV PT6.39 strain, considering its potential role as a bridge vector in a region where would be the main vector.

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Glioblastoma (GBM) is the most aggressive cancer originating in the brain, but unfortunately combination treatments with resection, radiation, and chemotherapy are relatively ineffective. Therefore, novel methods of adjuvant therapy are critically needed. Cyclotides are plant-derived circular peptides that chemosensitize drug-resistant breast cancer to doxorubicin.

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Brucellosis is a bacterial zoonosis caused by the genus , which mainly affects domestic animals. In these natural hosts, brucellae display a tropism towards the reproductive organs, such as the placenta, replicating in high numbers and leading to placentitis and abortion, an ability also exerted by the live-attenuated Rev1 strain, the only vaccine available for ovine brucellosis. It is broadly accepted that this tropism is mediated, at least in part, by the presence of certain preferred nutrients in the placenta, particularly erythritol, a polyol that is ultimately incorporated into the central carbon metabolism via two reactions dependent on transaldolase (Tal) or fructose-bisphosphate aldolase (Fba).

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Obesity confers risk for cardiovascular disease and vascular dementia. However, genomic alterations modulated by obesity in endothelial cells in the brain and their relationship to other neurovascular unit (NVU) cells are unknown. We performed single nuclei RNA sequencing (snRNAseq) of the NVU (endothelial cells, astrocytes, microglia, and neurons) from the hippocampus of obese (/) and wild-type (WT) male mice to characterize obesity-induced transcriptomic changes in a key brain memory center and assessed blood-brain barrier permeability (BBB) by gadolinium-enhanced magnetic resonance imaging (MRI).

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Article Synopsis
  • ADARs are RNA editing enzymes that convert adenosine to inosine in double-stranded RNA, allowing for potential correction of mutations using guiding oligonucleotides.
  • Their editing efficiency is affected by the presence of specific nucleotides near the target adenosine, with substrates adjacent to guanosine being less efficiently edited.
  • This study explores modified oligonucleotides that enhance editing at problematic 5'-GA sites, showing that certain analogs improve editing and elucidating how structural changes facilitate this process.
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Sexual reproduction requires the choreographed interaction of female cells and molecules with sperm and seminal fluid. In internally fertilizing animals, these interactions are managed by specialized tissues within the female reproductive tract (FRT), such as a uterus, glands, and sperm storage organs. However, female somatic reproductive tissues remain understudied, hindering insight into the molecular interactions that support fertility.

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At the California National Primate Research Center (CNPRC), the preferred housing for rhesus macaques involves maintaining them in complex social groups outdoors, primarily for breeding purposes. This functionally appropriate environment promotes effective coping through the expression of species-typical behaviors and important aspects of species-typical social structure, thus enabling normal animal development, higher reproductive success, and the production of high-quality biological models. Despite the benefits, social housing introduces challenges like trauma from aggressive interactions.

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Recent studies have indicated that hindbrain [fourth ventricle (4V)] administration of the neurohypophyseal hormone, oxytocin (OT), reduces body weight, energy intake and stimulates interscapular brown adipose tissue temperature (T) in male diet-induced obese (DIO) rats. What remains unclear is whether chronic hindbrain (4V) OT can impact body weight in female high fat diet-fed (HFD) rodents and whether this involves activation of brown adipose tissue (BAT). We hypothesized that OT-elicited stimulation of sympathetic nervous system (SNS) activation of interscapular brown adipose tissue (IBAT) contributes to its ability to activate BAT and reduce body weight in female high HFD-fed rats.

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Background: After weaning, nursery pigs have difficulty digesting non-starch polysaccharides in their diets, which can result in growth and health problems. Among non-starch polysaccharides, β-mannan is easily found in various cereal grains that form the basis of livestock diets and interferes the digestion and utilization of nutrients. Supplementation of dietary β-mannanase in nursery diet can alleviate the negative effects on nutrient utilization efficiency caused by β-mannan and improve growth and health of pigs.

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Article Synopsis
  • Specific combinations of natural alleles in the LFY and WAPO1 genes enhance spikelet number per spike (SNS) in wheat, which is key for grain yield.
  • A significant amino acid change in WAPO1 (C47F) and a polymorphism in LFY (R80S) were linked to increased SNS, revealing LFY-B as a potential causal gene.
  • The study suggests that the allele combination WAPO-A1-47F with LFY-B 34L and 80S can be strategically used in wheat breeding to boost SNS and overall grain yield.
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Ribosome binding of phasiRNA precursors accelerates the 24-nt phasiRNA burst in meiotic maize anthers.

Plant Cell

December 2024

Key Laboratory of Plant Molecular Physiology, Institute of Botany, The Chinese Academy of Sciences, Beijing 100093, China.

Reproductive phasiRNAs (phased, secondary, small interfering RNAs), produced from numerous PHAS loci, are essential for plant anther development. PHAS transcripts are enriched on endoplasmic reticulum-bound ribosomes in maize (Zea mays), but the impact of ribosome binding on phasiRNA biogenesis remains elusive. Through ribosome profiling of maize anthers at 10 developmental stages, we demonstrated that 24-PHAS transcripts are bound by ribosomes, with patterns corresponding to the timing and abundance of 24-PHAS transcripts.

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Article Synopsis
  • California produces nearly all U.S. prunes, contributing significantly to the global market, with over 50% of new plantings using the Krymsk 86 rootstock due to its beneficial traits.
  • In spring 2023, 'Improved French' prune trees in Northern California showed signs of decline, with about 3.6% to 4.6% of trees affected based on rootstock type.
  • Investigation revealed the presence of prune brown line (PBL) disease caused by tomato ringspot virus (ToRSV), confirming infection through RNA testing from various tree samples.
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Over half of all people diagnosed with cancer receive radiation therapy. Moderate to severe radiation dermatitis occurs in most human radiation patients, causing pain, aesthetic distress, and a negative impact on tumor control. No effective prevention or treatment for radiation dermatitis exists.

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