4,279 results match your criteria: "Boskovic Institute[Affiliation]"

Diabetic peripheral arterial disease in COVID-19 pandemic.

J Res Med Sci

July 2024

Division of Molecular Medicine, Laboratory for Advanced Genomics, Ruder Boskovic Institute, Zagreb, Croatia.

Both diabetes and peripheral arterial disease (PAD) have complex interactions with COVID-19. PAD is one of the most important underlying factors in the development of diabetic foot. The COVID-19 pandemic has also caused an increase in cardiovascular complications in those with chronic diseases, including diabetics, due to both the thrombophilic course of the viral disease and the lockdown measures applied for prevention.

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  • The use of cerebrospinal fluid (CSF) biomarkers is becoming crucial for diagnosing Alzheimer's disease (AD) and monitoring therapy responses due to advancements in treatment strategies for neurodegenerative diseases.
  • This review examines key neurodegeneration markers to differentiate AD patients from healthy individuals and those with mild cognitive impairment, focusing on various biological markers related to amyloid processing, neurofibrillary tangles, neuroinflammation, and neuroaxonal injury.
  • Core CSF biomarkers like Aβ, t-tau, and p-tau181 are recommended for accurate AD diagnosis and tracking disease progression, along with emerging markers related to synaptic dysfunction and neuroinflammation that need further validation for clinical application.
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Single-strand DNA-binding proteins SSB/RPA are ubiquitous and essential proteins that bind ssDNA in bacteria/eukaryotes and coordinate DNA metabolic processes such as replication, repair, and recombination. SSB protects ssDNA from degradation by nucleases, while also facilitating/regulating the activity of multiple partner proteins involved in DNA processes. Using Spi assay, which detects aberrantly excised λ prophage from the E.

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Melting of brain sphingomyelin (bSM) manifests as a broad feature in the DSC curve that encompasses the temperature range of 25 - 45 °C, with two distinguished maxima originating from the phase transitions of two the most abundant components: C24:1 (T) and C18:0 (T). While C24:1/C18:0 sphingomyelin transforms from the gel/ripple phase to the fluid/fluid phase, the dynamics of water molecules in the interfacial layer remain completely unknown. Therefore, we carried out a calorimetric (DSC), spectroscopic (temperature-dependent UV-Vis and fluorescence) and MD simulation study of bSM in the absence/presence of Laurdan® (bSM ± L) suspended in Britton-Robinson buffer with three different pH values, 4 (BRB4), 7 (BRB7) and 9 (BRB9), and of comparable ionic strength (I = 100 mM).

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We have investigated the changes in the microbial communities on the surface of trout eggs and the skin of adult trout in relation to the presence of . This pathogen causes saprolegniosis, a disease responsible for significant losses in salmonid farms and hatcheries. It is known from other disease systems that the host-associated microbiome plays a crucial role in the defence against pathogens, but if the pathogen predominates, this can lead to dysbiosis.

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MicroRNAs (miRNAs) are critical post-transcriptional gene regulators and their involvement in sporadic colon cancer (CRC) tumorigenesis has been confirmed. In this study we investigated differences in miRNA expression in microsatellite stable (MSS/EMAST-S), microsatellite unstable marked by high elevated microsatellite alterations at selected tetranucleotide repeats (MSS/EMAST-H), and high microsatellite unstable (MSI-H/EMAST-H) tumor subgroups as well as in tumors with different clinicopathologic characteristics. An RT-qPCR analysis of miRNA expression was carried out on 45 colon cancer and adjacent normal tissue samples (15 of each group).

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  • A case-control study examined SNP genotypes in 85 patients with pain-related temporomandibular disorders (TMDp) and 85 controls to find links between genetic factors and TMDp characteristics.
  • The study found that individuals with high pain intensity were more likely to carry specific minor alleles (rs2227306 and rs2227307) compared to controls, indicating a potential genetic risk associated with pain levels.
  • Logistic regression analysis identified minor allele "G" of rs2227307, older age, and female sex as significant predictors of high pain intensity, though genetic variations were not linked as risk factors for the overall presence of TMDp.
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Ceftriaxone upregulates GLT1 glutamate transporter in the brain and may have anti-CFC and anti-OCD effects. Twenty WZ-5HT rats were used to investigate the effects of ceftriaxone on obsessive-compulsive (OCD)-like behaviour in the marble-burying (MB) test, freezing behaviour in contextual fear conditioning (CFC) and expression of GLT1 protein in the hippocampus or amygdala using immunoblots. Fifteen DBA/2J mice were used in the MB test.

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Microsatellite instability (MSI) has been recognized as an important factor in colorectal cancer (CRC). It arises due to deficient mismatch repair (MMR), mostly attributed to MLH1 and MSH2 loss of function leading to a global MMR defect affecting mononucleotide and longer microsatellite loci. Recently, microsatellite instability at tetranucleotide loci, independent of the global MMR defect context, has been suggested to represent a distinct entity with possibly different consequences for tumorigenesis.

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Clustering of biphenyl oxamide ions by chiral recognition.

Eur J Mass Spectrom (Chichester)

October 2024

Croatian Meteorological and Hydrological Service, Zagreb, Croatia.

Gels created by self-assembly of small organic molecules are dynamic soft materials that have unique properties and demanding characterization. Four chiral gelators, with two valinol- or leucinoloxamido arms attached to the 2,2'-positions of the proatropisomeric biphenyl group were chosen to show that the electrospray ionization mass spectrometry (ESI-MS) could be used to differentiate the gelation feature of the chiral compounds and also to shed light on the gelation processes. By inspecting the gelation of several solvents, we showed that () proved to be the most efficient gelator, forming the largest observable assemblies in the gas phase.

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Changes in natural conditions and anthropogenic pollutants, alone or in combination, pose a significant challenge to coastal bivalve populations. The susceptibility of economically important bivalves to potential stressors in their farming environment has not been sufficiently investigated, despite the increase in anthropogenic pressure along the coast and the remarkable warming of seawater in recent years. Thus, the aim of this study was to evaluate the performance of mussel (Mytilus galloprovincialis) from two important farming sites in the eastern Adriatic, namely Mali Ston Bay (MSB) and Lim Bay (LB), in relation to variations of seawater parameters, reproductive cycle dynamics and tissue content of potentially harmful pollutants.

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Manganese ion homeostasis is vital for bacteria and is achieved via manganese-dependent transcription factors. Manganese mediation of transcription factor attachment to the corresponding oligonucleotide sequences can be investigated, e.g.

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Urban areas experience higher temperatures compared to rural areas and as such, are increasingly considered places of acclimatization and adaptation to warming. Small ectotherms, such as insects, whose body temperature rises with habitat temperature, are directly affected by temperature changes. Thus, warming could have a profound effect on insect behavior and physiology.

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The current therapies against gastric pathogen are ineffective in over 20% of patients. Enzymes belonging to the purine salvage pathway are considered as novel drug targets in this pathogen. Therefore, the main aim of the current study was to determine the antibacterial activity of pyridoxal 5'-phosphate (PLP), an active form of vitamin B6, against reference and clinical strains of .

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  • Radiotherapy for prostate cancer can lead to radioresistance, which involves cell adhesion signaling and changes in the protein composition of the cell-matrix junctions in cancer cells.
  • A mass spectrometry-based analysis compared radioresistant DU145 cells with their parental counterparts, revealing extensive matrix remodeling and altered protein expression, but no change in integrin levels.
  • Specific proteins, particularly perlecan/HSPG2, were found to play a crucial role in modulating radioresistance, suggesting that targeting this protein might offer new therapeutic strategies for treating prostate cancer.
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  • - Understanding the decay properties of the Hoyle state in carbon nuclei is crucial for calculating how much carbon is produced in red-giant stars.
  • - This paper presents a new, nearly background-free method to measure the decay ratio of the Hoyle state, utilizing advanced techniques for detecting charged particles.
  • - The study introduces a bidimensional map to improve measurement accuracy, providing a significant value for the radiative branching ratio and addressing discrepancies from recent research findings.
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To address the challenge of finding new combination therapies against castration-sensitive prostate cancer, we introduce Vini, a computational tool that predicts the efficacy of drug combinations at the intracellular level by integrating data from the KEGG, DrugBank, Pubchem, Protein Data Bank, Uniprot, NCI-60 and COSMIC databases. Vini is a computational tool that predicts the efficacy of drugs and their combinations at the intracellular level. It addresses the problem comprehensively by considering all known target genes, proteins and small molecules and their mutual interactions involved in the onset and development of cancer.

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Uncoated gold nanoparticles create fewer and less localized defects in model prokaryotic than in model eukaryotic lipid membranes.

Colloids Surf B Biointerfaces

November 2024

Division for Organic Chemistry and Biochemistry, Ruđer Bošković Institute, Bijenička 54, Zagreb 10000, Croatia. Electronic address:

The rise of the populations of antibiotic resistant bacteria represents an increasing threat to human health. In addition to the synthesis of new antibiotics, which is an extremely expensive and time-consuming process, one of the ways to combat bacterial infections is the use of gold nanoparticles (Au NPs) as the vehicles for targeted delivery of therapeutic drugs. Since such a strategy requires the investigation of the effect of Au NPs (with and without drugs) on both bacterial and human cells, we investigated how the presence of coating-free Au NPs affects the physicochemical properties of lipid membranes that model prokaryotic (PRO) and eukaryotic (EU) cells.

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The dimer of the tetracyanoethylene (TCNE) radical anions represents the simplest and the best studied case of two-electron multicenter covalent bonding (2e/mc or ). The model compound, -methylpyridinium salt of TCNE, is diamagnetic, meaning that the electrons in two contiguous radicals are paired and occupy a HOMO orbital which spans two TCNE radicals. Charge density in this system is studied as a benchmark for comparison of charge densities in other pancake-bonded radical systems.

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Peroxiporins are a specialized subset of aquaporins, which are integral membrane proteins primarily known for facilitating water transport across cell membranes. In addition to the classical water transport function, peroxiporins have the unique capability to transport hydrogen peroxide (HO), a reactive oxygen species involved in various cellular signaling pathways and regulation of oxidative stress responses. The regulation of HO levels is crucial for maintaining cellular homeostasis, and peroxiporins play a significant role in this process by modulating its intracellular and extracellular concentrations.

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Eukaryotic NMEs/NDP kinases are a family of 10 multifunctional proteins that occur in different cellular compartments and interact with various cellular components (proteins, membranes, and DNA). In contrast to the well-studied Group I NMEs (NME1-4), little is known about the more divergent Group II NMEs (NME5-9). Three recent publications now shed new light on NME6.

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The interactions of electrons with molecular systems under various conditions are essential to interdisciplinary research fields extending over the fundamental and applied sciences. In particular, investigating electron-induced ionization and dissociation of molecules may shed light on the radiation damage to living cells, the physicochemical processes in interstellar environments, and reaction mechanisms occurring in combustion or plasma. We have, therefore, studied electron-induced ionization and dissociation of the gas phase 3,4-dihydro-2H-pyran (DHP), a cyclic ether appearing to be a viable moiety for developing efficient clinical pharmacokinetics and revealing the mechanisms of biofuel combustion.

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  • * The family showcases unique biological and ecological characteristics, such as trophic specialization and adaptive radiation, yet lacks a quantitative hypothesis regarding its phylogenetic structure, limiting its research potential.
  • * Recent phylogenetic analysis combining multiple genetic markers has confirmed some subfamily groupings, pointed out taxonomic discrepancies within Harpacteinae, and suggested the family originated post-Pangea, with implications for cave colonization periods.
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