4,279 results match your criteria: "Boskovic Institute[Affiliation]"
J Res Med Sci
July 2024
Division of Molecular Medicine, Laboratory for Advanced Genomics, Ruder Boskovic Institute, Zagreb, Croatia.
Both diabetes and peripheral arterial disease (PAD) have complex interactions with COVID-19. PAD is one of the most important underlying factors in the development of diabetic foot. The COVID-19 pandemic has also caused an increase in cardiovascular complications in those with chronic diseases, including diabetics, due to both the thrombophilic course of the viral disease and the lockdown measures applied for prevention.
View Article and Find Full Text PDFExpert Rev Neurother
November 2024
Division of Molecular Medicine, Ruder Boskovic Institute, Zagreb, Croatia.
Sci Rep
September 2024
Division of Molecular Biology, Ruđer Bošković Institute, Bijenička 54, 10 000, Zagreb, Croatia.
Single-strand DNA-binding proteins SSB/RPA are ubiquitous and essential proteins that bind ssDNA in bacteria/eukaryotes and coordinate DNA metabolic processes such as replication, repair, and recombination. SSB protects ssDNA from degradation by nucleases, while also facilitating/regulating the activity of multiple partner proteins involved in DNA processes. Using Spi assay, which detects aberrantly excised λ prophage from the E.
View Article and Find Full Text PDFChem Phys Lipids
October 2024
Division for Organic Chemistry and Biochemistry, Ruđer Bošković Institute, Bijenička 54, Zagreb 10000, Croatia. Electronic address:
Melting of brain sphingomyelin (bSM) manifests as a broad feature in the DSC curve that encompasses the temperature range of 25 - 45 °C, with two distinguished maxima originating from the phase transitions of two the most abundant components: C24:1 (T) and C18:0 (T). While C24:1/C18:0 sphingomyelin transforms from the gel/ripple phase to the fluid/fluid phase, the dynamics of water molecules in the interfacial layer remain completely unknown. Therefore, we carried out a calorimetric (DSC), spectroscopic (temperature-dependent UV-Vis and fluorescence) and MD simulation study of bSM in the absence/presence of Laurdan® (bSM ± L) suspended in Britton-Robinson buffer with three different pH values, 4 (BRB4), 7 (BRB7) and 9 (BRB9), and of comparable ionic strength (I = 100 mM).
View Article and Find Full Text PDFNature
September 2024
Cell Biology and Biophysics, European Molecular Biology Laboratory (EMBL), Heidelberg, Germany.
Microorganisms
August 2024
Faculty of Food Technology and Biotechnology, University of Zagreb, Pierottijeva 6, 10000 Zagreb, Croatia.
We have investigated the changes in the microbial communities on the surface of trout eggs and the skin of adult trout in relation to the presence of . This pathogen causes saprolegniosis, a disease responsible for significant losses in salmonid farms and hatcheries. It is known from other disease systems that the host-associated microbiome plays a crucial role in the defence against pathogens, but if the pathogen predominates, this can lead to dysbiosis.
View Article and Find Full Text PDFGenes (Basel)
August 2024
Laboratory for Personalized Medicine, Division of Molecular Medicine, Ruđer Bošković Institute, 10000 Zagreb, Croatia.
MicroRNAs (miRNAs) are critical post-transcriptional gene regulators and their involvement in sporadic colon cancer (CRC) tumorigenesis has been confirmed. In this study we investigated differences in miRNA expression in microsatellite stable (MSS/EMAST-S), microsatellite unstable marked by high elevated microsatellite alterations at selected tetranucleotide repeats (MSS/EMAST-H), and high microsatellite unstable (MSI-H/EMAST-H) tumor subgroups as well as in tumors with different clinicopathologic characteristics. An RT-qPCR analysis of miRNA expression was carried out on 45 colon cancer and adjacent normal tissue samples (15 of each group).
View Article and Find Full Text PDFInt J Mol Sci
August 2024
Department of Removable Prosthodontics, University of Zagreb School of Dental Medicine, Gundulićeva 5, 10000 Zagreb, Croatia.
Biomedicines
August 2024
Department of Pharmacology, School of Medicine, University of Zagreb, 10000 Zagreb, Croatia.
Ceftriaxone upregulates GLT1 glutamate transporter in the brain and may have anti-CFC and anti-OCD effects. Twenty WZ-5HT rats were used to investigate the effects of ceftriaxone on obsessive-compulsive (OCD)-like behaviour in the marble-burying (MB) test, freezing behaviour in contextual fear conditioning (CFC) and expression of GLT1 protein in the hippocampus or amygdala using immunoblots. Fifteen DBA/2J mice were used in the MB test.
View Article and Find Full Text PDFCancers (Basel)
August 2024
Laboratory for Personalized Medicine, Division of Molecular Medicine, Rudjer Boskovic Institute, 10000 Zagreb, Croatia.
Microsatellite instability (MSI) has been recognized as an important factor in colorectal cancer (CRC). It arises due to deficient mismatch repair (MMR), mostly attributed to MLH1 and MSH2 loss of function leading to a global MMR defect affecting mononucleotide and longer microsatellite loci. Recently, microsatellite instability at tetranucleotide loci, independent of the global MMR defect context, has been suggested to represent a distinct entity with possibly different consequences for tumorigenesis.
View Article and Find Full Text PDFEur J Mass Spectrom (Chichester)
October 2024
Croatian Meteorological and Hydrological Service, Zagreb, Croatia.
Gels created by self-assembly of small organic molecules are dynamic soft materials that have unique properties and demanding characterization. Four chiral gelators, with two valinol- or leucinoloxamido arms attached to the 2,2'-positions of the proatropisomeric biphenyl group were chosen to show that the electrospray ionization mass spectrometry (ESI-MS) could be used to differentiate the gelation feature of the chiral compounds and also to shed light on the gelation processes. By inspecting the gelation of several solvents, we showed that () proved to be the most efficient gelator, forming the largest observable assemblies in the gas phase.
View Article and Find Full Text PDFChemosphere
September 2024
Ruđer Bošković Institute, 10000, Zagreb, Croatia. Electronic address:
Changes in natural conditions and anthropogenic pollutants, alone or in combination, pose a significant challenge to coastal bivalve populations. The susceptibility of economically important bivalves to potential stressors in their farming environment has not been sufficiently investigated, despite the increase in anthropogenic pressure along the coast and the remarkable warming of seawater in recent years. Thus, the aim of this study was to evaluate the performance of mussel (Mytilus galloprovincialis) from two important farming sites in the eastern Adriatic, namely Mali Ston Bay (MSB) and Lim Bay (LB), in relation to variations of seawater parameters, reproductive cycle dynamics and tissue content of potentially harmful pollutants.
View Article and Find Full Text PDFAnal Bioanal Chem
October 2024
Institute of Chemical Technologies and Analytics, TU Wien, Getreidemarkt 9-164 CTA, 1060, Vienna, Austria.
Manganese ion homeostasis is vital for bacteria and is achieved via manganese-dependent transcription factors. Manganese mediation of transcription factor attachment to the corresponding oligonucleotide sequences can be investigated, e.g.
View Article and Find Full Text PDFEcol Evol
August 2024
Croatian Myrmecological Society Zagreb Croatia.
Urban areas experience higher temperatures compared to rural areas and as such, are increasingly considered places of acclimatization and adaptation to warming. Small ectotherms, such as insects, whose body temperature rises with habitat temperature, are directly affected by temperature changes. Thus, warming could have a profound effect on insect behavior and physiology.
View Article and Find Full Text PDFJ Enzyme Inhib Med Chem
December 2024
Division of Biophysics, Institute of Experimental Physics, Faculty of Physics, University of Warsaw, Warsaw, Poland.
The current therapies against gastric pathogen are ineffective in over 20% of patients. Enzymes belonging to the purine salvage pathway are considered as novel drug targets in this pathogen. Therefore, the main aim of the current study was to determine the antibacterial activity of pyridoxal 5'-phosphate (PLP), an active form of vitamin B6, against reference and clinical strains of .
View Article and Find Full Text PDFFront Cell Dev Biol
August 2024
Laboratory for Cell Biology and Signalling, Division of Molecular Biology, Ruđer Bošković Institute, Zagreb, Croatia.
Sci Rep
August 2024
Zavod za eksperimentalnu fiziku, Rudjer Bošković Institute, Zagreb, Croatia.
Sci Rep
August 2024
Centre for Informatics and Computing, Rudjer Boskovic Institute, 10000, Zagreb, Croatia.
To address the challenge of finding new combination therapies against castration-sensitive prostate cancer, we introduce Vini, a computational tool that predicts the efficacy of drug combinations at the intracellular level by integrating data from the KEGG, DrugBank, Pubchem, Protein Data Bank, Uniprot, NCI-60 and COSMIC databases. Vini is a computational tool that predicts the efficacy of drugs and their combinations at the intracellular level. It addresses the problem comprehensively by considering all known target genes, proteins and small molecules and their mutual interactions involved in the onset and development of cancer.
View Article and Find Full Text PDFColloids Surf B Biointerfaces
November 2024
Division for Organic Chemistry and Biochemistry, Ruđer Bošković Institute, Bijenička 54, Zagreb 10000, Croatia. Electronic address:
The rise of the populations of antibiotic resistant bacteria represents an increasing threat to human health. In addition to the synthesis of new antibiotics, which is an extremely expensive and time-consuming process, one of the ways to combat bacterial infections is the use of gold nanoparticles (Au NPs) as the vehicles for targeted delivery of therapeutic drugs. Since such a strategy requires the investigation of the effect of Au NPs (with and without drugs) on both bacterial and human cells, we investigated how the presence of coating-free Au NPs affects the physicochemical properties of lipid membranes that model prokaryotic (PRO) and eukaryotic (EU) cells.
View Article and Find Full Text PDFSci Rep
August 2024
Center for Marine Research, Ruđer Bošković Institute, Rovinj, Croatia.
Cryst Growth Des
August 2024
Rud̵er Bošković Institute, Bijenička 54, HR-10000 Zagreb, Croatia.
The dimer of the tetracyanoethylene (TCNE) radical anions represents the simplest and the best studied case of two-electron multicenter covalent bonding (2e/mc or ). The model compound, -methylpyridinium salt of TCNE, is diamagnetic, meaning that the electrons in two contiguous radicals are paired and occupy a HOMO orbital which spans two TCNE radicals. Charge density in this system is studied as a benchmark for comparison of charge densities in other pancake-bonded radical systems.
View Article and Find Full Text PDFInt J Mol Sci
August 2024
Research Institute for Medicines (iMed.ULisboa), Faculty of Pharmacy, Universidade de Lisboa, 1649-003 Lisboa, Portugal.
Peroxiporins are a specialized subset of aquaporins, which are integral membrane proteins primarily known for facilitating water transport across cell membranes. In addition to the classical water transport function, peroxiporins have the unique capability to transport hydrogen peroxide (HO), a reactive oxygen species involved in various cellular signaling pathways and regulation of oxidative stress responses. The regulation of HO levels is crucial for maintaining cellular homeostasis, and peroxiporins play a significant role in this process by modulating its intracellular and extracellular concentrations.
View Article and Find Full Text PDFCells
July 2024
Univ. Grenoble Alpes, Inserm U1055, Lab. of Fundamental and Applied Bioenergetics (LBFA), 38058 Grenoble, France.
Eukaryotic NMEs/NDP kinases are a family of 10 multifunctional proteins that occur in different cellular compartments and interact with various cellular components (proteins, membranes, and DNA). In contrast to the well-studied Group I NMEs (NME1-4), little is known about the more divergent Group II NMEs (NME5-9). Three recent publications now shed new light on NME6.
View Article and Find Full Text PDFJ Chem Phys
August 2024
Department of Physical Chemistry, Ruđer Bošković Institute, Bijenička Cesta 54, HR-10000 Zagreb, Croatia.
The interactions of electrons with molecular systems under various conditions are essential to interdisciplinary research fields extending over the fundamental and applied sciences. In particular, investigating electron-induced ionization and dissociation of molecules may shed light on the radiation damage to living cells, the physicochemical processes in interstellar environments, and reaction mechanisms occurring in combustion or plasma. We have, therefore, studied electron-induced ionization and dissociation of the gas phase 3,4-dihydro-2H-pyran (DHP), a cyclic ether appearing to be a viable moiety for developing efficient clinical pharmacokinetics and revealing the mechanisms of biofuel combustion.
View Article and Find Full Text PDFCladistics
December 2024
Departament Biologia Evolutiva, Ecologia i Ciències Ambientals, Universitat de Barcelona, Av. Diagonal 645, E-08028, Barcelona, Spain.