2,513 results match your criteria: "Bogazici University[Affiliation]"
ACS Catal
May 2024
Chemical Engineering Department, Bogazici University, 34342 Bebek, Istanbul, Turkey.
J Chem Theory Comput
May 2024
Department of Biochemistry and Molecular Biology, Michigan State University, East Lansing, Michigan 48824, United States.
Phosphate derivatives and their interaction with metal cations are involved in many important biological phenomena, so an accurate characterization of the phosphate-metal interaction is necessary to properly understand the role of phosphate-metal contacts in mediating biological function. Herein, we improved the standard 12-6 Lennard-Jones (LJ) potential via the usage of the 12-6-4 LJ model, which incorporates ion-induced dipole interactions. Via parameter scanning, we fine-tuned the 12-6-4 LJ polarizability values to obtain accurate absolute binding free energies for the phosphate anions HPO, HPO, PO coordinating with Ca and Mg.
View Article and Find Full Text PDFObesity (Silver Spring)
July 2024
Columbia Data Analytics, New York, New York, USA.
Objective: Obesity and its cardiovascular complications are major causes of morbidity and mortality. Little is known in real-world settings about the effect of newly approved antiobesity medications (AOMs) on cardiovascular complications among patients with obesity.
Methods: This retrospective cohort study examined the association between newly approved AOM use and cardiovascular events among Medicare patients with obesity using data from 2020 to 2022.
J Phys Chem B
May 2024
Department of Chemical and Environmental Engineering, Yale University, New Haven, Connecticut 06520, United States.
Human γD-crystallin belongs to a crucial family of proteins known as crystallins located in the fiber cells of the human lens. Since crystallins do not undergo any turnover after birth, they need to possess remarkable thermodynamic stability. However, their sporadic misfolding and aggregation, triggered by environmental perturbations or genetic mutations, constitute the molecular basis of cataracts, which is the primary cause of blindness in the globe according to the World Health Organization.
View Article and Find Full Text PDFACS Biomater Sci Eng
May 2024
Department of Chemical Engineering, Bogazici University, Istanbul 34342, Turkey.
Primary brain tumor is one of the most fatal diseases. The most malignant type among them, glioblastoma (GBM), has low survival rates. Standard treatments reduce the life quality of patients due to serious side effects.
View Article and Find Full Text PDFACS Appl Mater Interfaces
May 2024
Bogazici University, Department of Chemistry, Bebek 34342, Istanbul, Türkiye.
Metallic zinc anodes in aqueous zinc-ion batteries (ZIBs) suffer from dendritic growth, low Coulombic efficiency, and high polarization during cycling. To mitigate these challenges, current collectors based on three-dimensional (3D) commercial copper foam (CCuF) are generally preferred. However, their utilization is constrained by their thickness, low electroactive surface area, and increased manufacturing expenses.
View Article and Find Full Text PDFACS Biomater Sci Eng
May 2024
Department of Chemistry, Bogazici University, Istanbul 34342, Türkiye.
Macroporous cryogels are attractive scaffolds for biomedical applications, such as biomolecular immobilization, diagnostic sensing, and tissue engineering. In this study, thiol-reactive redox-responsive cryogels with a porous structure are prepared using photopolymerization of a pyridyl disulfide poly(ethylene glycol) methacrylate (PDS-PEG-MA) monomer. Reactive cryogels are produced using PDS-PEG-MA and hydrophilic poly(ethylene glycol) methyl ether methacrylate (PEGMEMA) monomers, along with a PEG-based cross-linker and photoinitiator.
View Article and Find Full Text PDFPhys Rev Lett
March 2024
CERN, Geneva, Switzerland.
This Letter presents the first study of Higgs boson production in association with a vector boson (V=W or Z) in the fully hadronic qqbb final state using data recorded by the ATLAS detector at the LHC in proton-proton collisions at sqrt[s]=13 TeV and corresponding to an integrated luminosity of 137 fb^{-1}. The vector bosons and Higgs bosons are each reconstructed as large-radius jets and tagged using jet substructure techniques. Dedicated tagging algorithms exploiting b-tagging properties are used to identify jets consistent with Higgs bosons decaying into bb[over ¯].
View Article and Find Full Text PDFDiagnostics (Basel)
March 2024
Institute of Biomedical Engineering, Bogazici University, Istanbul 34342, Turkey.
S100 protein expression levels and neurofibromatosis type 2 (NF-2) mutations result in different disease courses in meningiomas. This study aimed to investigate non-invasive biomarkers of NF-2 copy number loss and S100 protein expression in meningiomas using morphological, radiomics, and deep learning-based features of susceptibility-weighted MRI (SWI). This retrospective study included 99 patients with S100 protein expression data and 92 patients with NF-2 copy number loss information.
View Article and Find Full Text PDFBiotechnol Prog
August 2024
Biomimetics and Bioinspired Biomaterials Research Laboratory, Institute of Biomedical Engineering, Bogaziçi University, Istanbul, Turkey.
Amniotic membrane extract (AME) and Wharton's jelly mesenchymal stem cells derived-exosomes (WJ-MSC-Exos) are promising therapeutic solutions explored for their potential in tissue engineering and regenerative medicine, particularly in skin and corneal wound healing applications. AME is an extract form of human amniotic membrane and known to contain a plethora of cytokines and growth factors, making it a highly attractive option for topical applications. Similarly, WJ-MSC-Exos have garnered significant interest for their wound healing properties.
View Article and Find Full Text PDFActa Oncol
April 2024
Mergen Analytics, Ankara, Turkey.
Background And Purpose: There is growing concern about the adverse metabolic and cardiovascular effects of abiraterone acetate (AA) and enzalutamide (ENZ), two standard hormonal therapies for prostate cancer. We analysed the risk of cardiovascular adverse events among patients treated with AA and ENZ.
Patients And Methods: We used Kythera Medicare data from January 2019 to June 2023 to identify patients with at least one pharmacy claim for AA or ENZ.
ACS Omega
April 2024
Department of Chemical Engineering, Bogazici University, 34342 Istanbul, Turkey.
Genome-scale metabolic models (GEMs) are promising computational tools that contribute to elucidating host-virus interactions at the system level and developing therapeutic strategies against viral infection. In this study, the effect of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) on liver metabolism was investigated using integrated GEMs of human hepatocytes and SARS-CoV-2. They were generated for uninfected and infected hepatocytes using transcriptome data.
View Article and Find Full Text PDFThe observation of WWγ production in proton-proton collisions at a center-of-mass energy of 13 TeV with an integrated luminosity of 138 fb^{-1} is presented. The observed (expected) significance is 5.6 (5.
View Article and Find Full Text PDFDev Sci
July 2024
Department of Psychological Sciences, University of Missouri, Columbia, USA.
Understanding the magnitudes represented by numerals is a core component of early mathematical development and is often assessed by accuracy in situating numerals and fractions on a number line. Performance on these measures is consistently related to performance in other mathematics domains, but the strength of these relations may be overestimated because general cognitive ability has not been fully controlled in prior studies. The first of two meta-analyses (162 studies, 33,101 participants) confirmed a relation between performance on whole number (r = 0.
View Article and Find Full Text PDFPLoS One
April 2024
Computer Engineering Department, Boğaziçi University, İstanbul, Turkey.
People use the World Wide Web heavily to share their experiences with entities such as products, services or travel destinations. Texts that provide online feedback through reviews and comments are essential for consumer decisions. These comments create a valuable source that may be used to measure satisfaction related to products or services.
View Article and Find Full Text PDFA search is reported for near-threshold structures in the J/ψJ/ψ invariant mass spectrum produced in proton-proton collisions at sqrt[s]=13 TeV from data collected by the CMS experiment, corresponding to an integrated luminosity of 135 fb^{-1}. Three structures are found, and a model with quantum interference among these structures provides a good description of the data. A new structure is observed with a local significance above 5 standard deviations at a mass of 6638_{-38}^{+43}(stat)_{-31}^{+16}(syst) MeV.
View Article and Find Full Text PDFChemosphere
May 2024
Department of Environmental Engineering, Faculty of Civil Engineering, Istanbul Technical University, Maslak, 34396, Istanbul, Turkey.
The recalcitrance of lignin impedes the efficient utilization of lignocellulosic biomass, hindering the efficient production of biogas and value-added materials. Despite the emergence of anaerobic digestion as a superior alternative to the aerobic method for lignin processing, achieving its feasibility requires thorough characterization of lignin-degrading anaerobic microorganisms, assessment of their biomethane production potential, and a comprehensive understanding of the degradation pathway. This study aimed to address the aforementioned necessities by bioaugmenting seed sludge with three distinct enriched lignin-degrading microbial consortia at both 25 °C and 37 °C.
View Article and Find Full Text PDFExp Aging Res
March 2024
Department of Psychology, Yeditepe University, Istanbul, Turkiye.
Objective: Research suggests that executive functions and metacognitive abilities, including self-reflection and insight, may share underlying mechanisms since both rely on top-down cognitive processes and require self-regulation. However, these relationships have not been thoroughly examined by empirical research. The current study investigated the relationship between insight, self-reflection, and executive functions cross-sectionally across different stages of aging.
View Article and Find Full Text PDFArch Gerontol Geriatr
August 2024
Department of Molecular Biology and Genetics, Bogazici University, Istanbul, Turkiye; Center for Life Sciences and Technologies, Bogazici University, Istanbul, Turkiye.
Alzheimer's disease (AD) is one of the most common forms of neurodegenerative diseases. Apolipoprotein E4 (ApoE4) is the main genetic risk factor in the development of late-onset AD. However, the exact mechanism underlying ApoE4-mediated neurodegeneration remains unclear.
View Article and Find Full Text PDFChem Rec
April 2024
Chemical Sciences and Engineering Division, Argonne National Laboratory, Lemont, Illinois, 60439, United States.
Silica-derived nanostructured catalysts (SDNCs) are a class of materials synthesized using nanocasting and templating techniques, which involve the sacrificial removal of a silica template to generate highly porous nanostructured materials. The surface of these nanostructures is functionalized with a variety of electrocatalytically active metal and non-metal atoms. SDNCs have attracted considerable attention due to their unique physicochemical properties, tunable electronic configuration, and microstructure.
View Article and Find Full Text PDFElectromagn Biol Med
April 2024
Department of Physiology, Faculty of Medicine, Çukurova University, Adana, Türkiye.
This paper presents data on pain perception in rats exposed to 6 GHz radiofrequency electromagnetic radiation (RF-EMR). Rats were divided into two groups: control ( = 10, 4 replicates per test) and RF-EMR exposed group ( = 10, 4 replicates per test). Nociceptive responses of the groups were measured using rodent analgesiometry.
View Article and Find Full Text PDFPhys Rev Lett
March 2024
CERN, Geneva, Switzerland.
ATLAS measured the centrality dependence of the dijet yield using 165 nb^{-1} of p+Pb data collected at sqrt[s_{NN}]=8.16 TeV in 2016. The event centrality, which reflects the p+Pb impact parameter, is characterized by the total transverse energy registered in the Pb-going side of the forward calorimeter.
View Article and Find Full Text PDFBioconjug Chem
April 2024
Department of Chemistry, Bogazici University, Bebek, Istanbul 34342, Türkiye.
Increasing interest in the utilization of hydrogels in various areas of biomedical sciences ranging from biosensing and drug delivery to tissue engineering has necessitated the synthesis of these materials using efficient and benign chemical transformations. In this regard, the advent of "" chemistry revolutionized the design of hydrogels and a range of efficient reactions was utilized to obtain hydrogels with increased control over their physicochemical properties. The ability to apply the "" chemistry paradigm to both synthetic and natural polymers as hydrogel precursors further expanded the utility of this chemistry in network formation.
View Article and Find Full Text PDFiScience
April 2024
Mechanical Engineering Department, School of Engineering, Koç University, Istanbul 34450, Türkiye.
Droplet generation technology has become increasingly important in a wide range of applications, including biotechnology and chemical synthesis. T-junction channels are commonly used for droplet generation due to their integration capability of a larger number of droplet generators in a compact space. In this study, a finite element analysis (FEA) approach is employed to simulate droplet production and its dynamic regimes in a T-junction configuration and collect data for post-processing analysis.
View Article and Find Full Text PDFPediatr Surg Int
March 2024
Division of Pediatric General and Thoracic Surgery, The Center for Fetal and Placental Research, Cincinnati Fetal Center, Cincinnati Children's Hospital Medical Center (CCHMC), Cincinnati, OH, USA.
Purpose: Impaired fetal lung vasculature determines the degree of pulmonary hypertension in the congenital diaphragmatic hernia (CDH). This study aims to demonstrate the morphometric measurements that differ in pulmonary vessels of fetuses with CDH.
Methods: Nitrofen-induced CDH Sprague-Dawley rat fetuses were scanned with microcomputed tomography.