123 results match your criteria: "Biophysical Sciences Institute[Affiliation]"
Exp Physiol
November 2024
School of Biomedical Sciences, Monash University, Clayton, Victoria, Australia.
Muscle spindles are stretch-sensitive mechanoreceptors found in the skeletal muscles of most four-limbed vertebrates. They are unique amongst sensory receptors in the ability to regulate their sensitivity by contraction of the intrafusal muscle fibres on which the sensory endings lie. Muscle spindles have revealed a remarkable diversity of functions, including reflex action in posture and locomotion, contributing to bodily self awareness, and influencing wound healing.
View Article and Find Full Text PDFInt J Mol Sci
January 2024
Department of Biosciences, Durham University, South Road, Durham DH1 3LE, UK.
The carbamate post-translational modification (PTM), formed by the nucleophilic attack of carbon dioxide by a dissociated lysine epsilon-amino group, is proposed as a widespread mechanism for sensing this biologically important bioactive gas. Here, we demonstrate the discovery and in vitro characterization of a carbamate PTM on K9 of nucleoside diphosphate kinase (NDK1). We demonstrate that altered side chain reactivity at K9 is deleterious for NDK1 structure and catalytic function, but that CO does not impact catalysis.
View Article and Find Full Text PDFCurr Opin Cell Biol
February 2024
Department of Biosciences, University of Durham, Upper Mountjoy Science Site, Durham, United Kingdom; Biophysical Sciences Institute, University of Durham, Durham, United Kingdom; Department of Biological Structure, University of Washington, Seattle, WA, United States. Electronic address:
Intermediate filaments are critical for cell and tissue homeostasis and for stress responses. Cytoplasmic intermediate filaments form versatile and dynamic assemblies that interconnect cellular organelles, participate in signaling and protect cells and tissues against stress. Here we have focused on their involvement in redox signaling and oxidative stress, which arises in numerous pathophysiological situations.
View Article and Find Full Text PDFBBA Adv
June 2023
Department of Biosciences, Durham University, South Road, Durham DH1 3LE, UK.
Background Identifying CO-binding proteins is vital for our knowledge of CO-regulated molecular processes. The carbamate post-translational modification is a reversible CO-mediated adduct that can form on neutral -terminal α-amino or lysine ε-amino groups. Methods We have developed triethyloxonium ion (TEO) as a chemical proteomics tool to trap the carbamate post-translational modification on protein covalently.
View Article and Find Full Text PDFCells
June 2023
Department of Biosciences, Upper Mountjoy Science Site, The University of Durham, South Road, Durham DH1 3LE, UK.
Adv Redox Res
April 2023
Department of Biosciences, University of Durham, Upper Mountjoy Science Site, South Road, Durham DH1 3LE, United Kingdom.
Ionising radiation (IR) is a cause of lipid peroxidation, and epidemiological data have revealed a correlation between exposure to IR and the development of eye lens cataracts. Cataracts remain the leading cause of blindness around the world. The plasma membranes of lens fibre cells are one of the most cholesterolrich membranes in the human body, forming lipid rafts and contributing to the biophysical properties of lens fibre plasma membrane.
View Article and Find Full Text PDFFront Cell Dev Biol
February 2023
Department of Biosciences, University of Durham, Upper Mountjoy Science Site, Durham, United Kingdom.
Sci Rep
February 2023
Department of Musculoskeletal & Ageing Science, Institute of Life Course & Medical Science, University of Liverpool, The William Henry Duncan Building, 6 West Derby Street, Liverpool, L7 8TX, UK.
Across the human body, skeletal muscles have a broad range of biomechanical roles that employ complex proprioceptive control strategies to successfully execute a desired movement. This information is derived from peripherally located sensory apparatus, the muscle spindle and Golgi tendon organs. The abundance of these sensory organs, particularly muscle spindles, is known to differ considerably across individual muscles.
View Article and Find Full Text PDFExp Physiol
January 2024
Department of Biosciences, University of Durham, Durham, UK.
This paper is in two parts: 'There', which is a review of some of the major advances in the study of spindle structure and function during the past 50 years, serving as an introduction to the symposium entitled 'Mechanotransduction, Muscle Spindles and Proprioception' held in Munich in July 2022; and 'And Back Again', presenting new quantitative morphological results on the equatorial nuclei of intrafusal muscle fibres and of the primary sensory ending in relationship to passive stretch of the spindle.
View Article and Find Full Text PDFNat Commun
September 2022
Department of Biosciences, Biophysical Sciences Institute, Durham University, South Road, Durham, DH1 3LE, UK.
Light harvesting is fundamental for production of ATP and reducing equivalents for CO fixation during photosynthesis. However, electronic energy transfer (EET) through a photosystem can harm the photosynthetic apparatus when not balanced with CO. Here, we show that CO binding to the light-harvesting complex modulates EET in photosynthetic cyanobacteria.
View Article and Find Full Text PDFExp Physiol
December 2021
School of Biomedical Sciences, Monash University, Clayton, Victoria, Australia.
New Findings: What is the topic of this review? We describe the structure and function of secondary sensory endings of muscle spindles, their reflex action and role in motor control and proprioception. What advances does it highlight? In most mammalian skeletal muscles, secondary endings of spindles are more or much more numerous than primary endings but are much less well studied. By focusing on secondary endings in this review, we aim to redress the balance, draw attention to what is not known and stimulate future research.
View Article and Find Full Text PDFSci Adv
September 2021
Department of Biosciences, Durham University, Durham DH1 3LE, UK.
The identification of CO-binding proteins is crucial to understanding CO-regulated molecular processes. CO can form a reversible posttranslational modification through carbamylation of neutral N-terminal α-amino or lysine ε-amino groups. We have previously developed triethyloxonium (TEO) ion as a chemical proteomics tool for covalent trapping of carbamates, and here, we deploy TEO to identify ubiquitin as a mammalian CO-binding protein.
View Article and Find Full Text PDFMolecules
August 2021
Wellcome-Wolfson Institute for Experimental Medicine, School of Medicine, Dentistry and Biomedical Sciences, Queen's University Belfast, 97 Lisburn Road, Belfast BT9 7BL, UK.
Peptoids (oligo -substituted glycines) are peptide analogues, which can be designed to mimic host antimicrobial peptides, with the advantage that they are resistant to proteolytic degradation. Few studies on the antimicrobial efficacy of peptoids have focused on Gram negative anaerobic microbes associated with clinical infections, which are commonly recalcitrant to antibiotic treatment. We therefore studied the cytotoxicity and antibiofilm activity of a family of peptoids against the Gram negative obligate anaerobe , which is associated with infections in the oral cavity.
View Article and Find Full Text PDFJ Physiol
September 2021
Department of Biosciences, and Biophysical Sciences Institute, Durham University, Durham, UK.
Biology (Basel)
April 2021
Department of Biosciences, Durham University, South Road, Durham DH1 3LE, UK.
The unfolded protein response is the mechanism by which cells control endoplasmic reticulum (ER) protein homeostasis. Under normal conditions, the UPR is not activated; however, under certain stresses, such as hypoxia or altered glycosylation, the UPR can be activated due to an accumulation of unfolded proteins. The activation of the UPR involves three signaling pathways, IRE1, PERK and ATF6, which all play vital roles in returning protein homeostasis to levels seen in non-stressed cells.
View Article and Find Full Text PDFImmunology
May 2021
Department of Biosciences, Biophysical Sciences Institute, Durham University, Durham, UK.
Whether resident and recruited myeloid cells may impair or aid healing of acute skin wounds remains a debated question. To begin to address this, we examined the importance of CD11c+ myeloid cells in the early activation of skin wound repair. We find that an absence of CD11c+ cells delays wound closure and epidermal proliferation, likely due to defects in the activation of the IL-23-IL-22 axis that is required for wound healing.
View Article and Find Full Text PDFMol Biol Cell
November 2020
Department of Biosciences, Durham University, Durham DH1 3LE, United Kingdom.
Accumulation of unfolded proteins in the endoplasmic reticulum (ER) causes ER stress and activates a signaling network known as the unfolded protein response (UPR). Here we characterize how ER stress and the UPR inhibit insulin signaling. We find that ER stress inhibits insulin signaling by depleting the cell surface population of the insulin receptor.
View Article and Find Full Text PDFChem Commun (Camb)
September 2020
Deparment of Chemistry, Biophysical Sciences Institute, Durham University, South Road, Durham, DH1 3LE, UK.
In the search for new sources of antimicrobials many researchers have investigated antimicrobial peptides (AMPs) as templates for the design of innovative therapeutics. However, efforts to develop AMPs in this area has been severely hampered by their inherent susceptibility to enzymatic degradation. Given this only a handful of AMPs are currently in clinical trials.
View Article and Find Full Text PDFPlant Commun
July 2020
Department of Biosciences, Durham University, South Road, Durham DH1 3LE, UK.
Plant NLR proteins enable the immune system to recognize and respond to pathogen attack. An early consequence of immune activation is transcriptional reprogramming. Some NLRs have been shown to act in the nucleus and interact with transcription factors.
View Article and Find Full Text PDFMethods Enzymol
June 2021
Department of Chemistry; Department of Bioscience; Biophysical Sciences Institute, Durham University, Durham, United Kingdom.
Methods Enzymol
June 2021
Department of Chemistry, Durham University, Durham, United Kingdom.
Retinoic acid receptors were discovered during early studies of the actions and mechanisms of essential vitamins. Vitamin A is metabolized in the body to retinoic acid (RA) which is a key compound in the control of many developmental processes in chordates. These functions are mediated by a subfamily of nuclear receptors, divided into two classes, the retinoic acid receptors (RAR) and the retinoid X receptors (RXR).
View Article and Find Full Text PDFBr J Pharmacol
September 2019
Strathclyde Institute of Pharmacy and Biomedical Science, University of Strathclyde, Glasgow, UK.
Background And Purpose: The TRPV4 ion channels are Ca permeable, non-selective cation channels that mediate large, but highly localized, Ca signals in the endothelium. The mechanisms that permit highly localized Ca changes to evoke cell-wide activity are incompletely understood. Here, we tested the hypothesis that TRPV4-mediated Ca influx activates Ca release from internal Ca stores to generate widespread effects.
View Article and Find Full Text PDFChem Sci
May 2019
Department of Biosciences , Durham University, South Road , Durham, DH1 3LE , UK.
Mutat Res Rev Mutat Res
March 2020
Department of Biosciences, University of Durham, Mountjoy Science Site, South Road, Durham, DH1 3LE, UK; Biophysical Sciences Institute, University of Durham, Mountjoy Science Site, South Road, Durham, DH1 3LE, UK. Electronic address:
Ionizing radiation (IR) damages DNA and other macromolecules, including proteins and lipids. Most cell types can repair DNA damage and cycle continuously their macromolecules as a mechanism to remove defective proteins and lipids. In those cells that lack nuclei and other organelles, such as lens fiber cells and mammalian erythrocytes, IR-induced damage to macromolecules is retained because they cannot be easily replenished.
View Article and Find Full Text PDFJ Phys Chem Lett
May 2019
Department of Chemistry , Durham University, South Road , Durham DH1 3LE , U.K.
Transcriptional repressor EthR from Mycobacterium tuberculosis is a valuable target for antibiotic booster drugs. We previously reported a virtual screening campaign to identify EthR inhibitors for development. Two ligand binding orientations were often proposed, though only the top scoring pose was utilized for filtering of the large data set.
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