886 results match your criteria: "Biological and Chemical Research Centre[Affiliation]"

The hybrid system BiVO/g-CN is a prospective photocatalyst because of the favorable mutual alignment of the energy bands of both semiconductors. However, the path of the photocatalytic process is still unclear because of contradictory information in the literature on whether the mechanism of charge carrier separation at the BiVO/g-CN interface is band-to-band or Z-scheme. In this work, we clarified this issue by comparative photocatalytic studies with the use of systems without a mediator and with different kinds of mediators including Au nanoparticles, fullerene derivatives, and the Fe/Fe redox couple.

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Dry-aged beef is a premium product known for its unique taste and aroma. These characteristics are thought to partially depend on the composition of the microorganisms present on the meat surface during ageing. Recently several attempts to standardise this process were made.

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MicroED: Unveiling the Structural Chemistry of Plant Biomineralisation.

Molecules

October 2024

Faculty of Chemistry, Biological and Chemical Research Centre, University of Warsaw, Żwirki i Wigury 101, 02-089 Warsaw, Poland.

Plants are able to produce various types of crystals through metabolic processes, serving functions ranging from herbivore deterrence to photosynthetic efficiency. However, the structural analysis of these crystals has remained challenging due to their small and often imperfect nature, which renders traditional X-ray diffraction techniques unsuitable. This study explores the use of Microcrystal Electron Diffraction (microED) as a novel method for the structural analysis of plant-derived microcrystals, focusing on (Milld.

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Background: One defining feature of various aggressive cancers, including glioblastoma multiforme (GBM), is glycolysis upregulation, making its inhibition a promising therapeutic approach. One promising compound is 2-deoxy-d-glucose (2-DG), a d-glucose analog with high clinical potential due to its ability to inhibit glycolysis. Upon uptake, 2-DG is phosphorylated by hexokinase to 2-DG-6-phosphate, which inhibits hexokinase and downstream glycolytic enzymes.

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Article Synopsis
  • Molecular methods are commonly used for estimating effective population sizes but face challenges due to model assumption violations; simulations and empirical data can help improve these methodologies.* -
  • The study analyzed long-term genetic and ecological data of grey wolves in Germany, alongside detailed genetic studies in Poland, Spain, and Portugal, to enhance estimation strategies for these populations.* -
  • It was found that the number of wolf packs serves as a reliable indicator of effective population size, and notably, half of the European wolf populations do not meet the effective population size criterion of 500.*
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Fluorescent nanothermometers are positioned to revolutionize research into cell functions and provide strategies for early diagnostics. Fluorescent nanostructures hold particular promise to fulfill this potential if nontoxic, stable varieties allowing for precise temperature measurement with high thermal sensitivities can be fabricated. In this work, we investigate the performance of micelle-encapsulated CuInS/ZnS core/shell colloidal quantum dots (QDs) as fluorescent nanothermometers.

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Conventional refinement strategies used for three-dimensional electron diffraction (3D ED) data disregard the bonding effects between the atoms in a molecule by assuming a pure spherical model called the Independent Atom model (IAM) and may lead to an inaccurate or biased structure. Here we show that it is possible to perform a refinement going beyond the IAM with electron diffraction data. We perform kappa refinement which models charge transfers between atoms while assuming a spherical model.

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The Z-alkene geometry is prevalent in various chemical compounds, including numerous building blocks, fine chemicals, and natural products. Unfortunately, established Mo, W, and Ru Z-selective catalysts lose their selectivity at high temperatures required for industrial processes like reactive distillation, which limits their synthetic applications. To address this issue, we develop a catalyst capable of providing Z-alkenes with high selectivity under harsh conditions.

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Correction: Transposon-derived introns as an element shaping the structure of eukaryotic genomes.

Mob DNA

October 2024

Institute of Evolutionary Biology, Faculty of Biology, Biological and Chemical Research Centre, University of Warsaw, Żwirki i Wigury 101, Warsaw, 02‑089, Poland.

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Article Synopsis
  • Many social insect species, like red wood ants, build distinct nests that create unique microenvironments, hosting specific communities of organisms.
  • This study focused on the microorganism communities within red wood ant mounds versus the surrounding forest litter, employing various sampling and analysis methods to identify differences.
  • Results indicated that the microbial community in the ant mounds significantly differs from the forest litter, suggesting that these nests provide a specialized habitat potentially beneficial for certain fungi adapted to living with ants.
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Leaf litter decomposition, a crucial component of the global carbon cycle, relies on the pivotal role played by microorganisms. However, despite their ecological importance, leaf-litter-decomposing microorganism taxonomic and functional diversity needs additional study. This study explores the taxonomic composition, dynamics, and functional role of microbial communities that decompose leaf litter of forest-forming tree species in two ecologically unique regions of Europe.

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We describe the synthesis of a new generation of 1,8-diaminocarbazole building blocks for the construction of anion receptors and fluorescent sensors. These new building blocks feature mildly electron-withdrawing ester substituents at positions 3 and 6 of the carbazole core, which improve anion affinities and significantly enhance solubilities, without compromising fluorescent response. To demonstrate the advantages of the new building blocks, three of them were converted into model diamide receptors R1-R3.

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Global freshwater distribution of Telonemia protists.

ISME J

January 2024

Department of Aquatic Microbial Ecology, Institute of Hydrobiology, Biology Centre of the Czech Academy of Sciences, 37005, České Budějovice, Czech Republic.

Article Synopsis
  • Telonemia are ancient marine protists with established evolutionary links to the SAR supergroup, but their ecological roles and distribution in freshwater environments remain under-researched.
  • A global study of over a thousand freshwater metagenomes and 407 samples from lakes revealed a wide distribution of Telonemia, though no new major clades were identified, indicating their diversity is well-represented in current surveys.
  • Findings suggest Telonemia prefer colder, deeper areas of lakes in the Northern Hemisphere, where they can make up 10%-20% of the heterotrophic flagellate population, highlighting their significance in freshwater food webs.
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Factors shaping home ranges of Eurasian lynx (Lynx lynx) in the Western Carpathians.

Sci Rep

September 2024

Department of Applied Zoology and Wildlife Management, Faculty of Forestry, Technical University in Zvolen, T. G. Masaryka 24, 960 01, Zvolen, Slovakia.

Understanding how large carnivores utilize space is crucial for management planning in human-dominated landscape and enhances the accuracy of population size estimates. However, Eurasian lynx display a large inter-population variation in the size of home ranges across their European range which makes extrapolation to broader areas of a species distribution problematic. This study evaluates variations in home range size for 35 Eurasian lynx in the Western Carpathians during 2011-2022 based on GPS telemetry and explains how intrinsic and environmental factors shape lynx spatial behaviour when facing anthropogenic pressure.

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We report the design, synthesis, and antimicrobial evaluation of a series of ciprofloxacin (CP) conjugates coupled with nitrogen-containing heterocycles. In vitro screening of these new hybrid compounds (1-13) against a panel of planktonic bacterial strains highlighted thiazolyl homologs 6 and 7 as the most promising candidates for further investigation. These derivatives demonstrated potent growth-inhibitory activity against various standard and clinical isolates, with minimum inhibitory concentrations (MICs) ranging from 0.

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The effects of a peripheral protein - cholesterol oxidase (3β-hydroxysteroid oxidase, ChOx) on the characteristics of model lipid membranes composed of cholesterol, cholesterol:sphingomyelin (1:1), and the raft model composed of DOPC:Chol:SM (1:1:1) were investigated using two membrane model systems: the flat monolayer prepared by the Langmuir technique and the curved model consisting of liposome of the same lipids. The planar monolayers and liposomes were employed to follow membrane cholesterol oxidation to cholestenone catalyzed by ChOx and changes in the lipid membrane structure accompanying this reaction. Changes in the structure of liposomes in the presence of the enzyme were reflected in the changes of hydrodynamic diameter and fluorescence microscopy images, while changes of surface properties of planar membranes were evaluated by grazing incidence X-ray diffraction (GIXD) and Brewster angle microscopy.

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The relationship between the evolutionary dynamics observed in contemporary populations (microevolution) and evolution on timescales of millions of years (macroevolution) has been a topic of considerable debate. Historically, this debate centers on inconsistencies between microevolutionary processes and macroevolutionary patterns. Here, we characterize a striking exception: emerging evidence indicates that standing variation in contemporary populations and macroevolutionary rates of phenotypic divergence is often positively correlated.

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The widespread sharing of information on the Internet has given rise to ecological studies that use data from digital sources including digitized museum records and social media posts. Most of these studies have focused on understanding species occurrences and distributions. In this essay, we argue that data from digital sources also offer many opportunities to study animal behavior including long-term and large-scale comparisons within and between species.

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Some species of the Gentianaceae family are a valuable source of secondary metabolites. However, the phytochemical knowledge of some of these species remains insufficient. Therefore, this work focused on the isolation of the two main secondary metabolites in the methanolic extract from a cell suspension using preparative HPLC and the determination of their structure using UHPLC-DAD-IT-MS/MS and NMR methods.

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Understanding protein function often necessitates characterizing the flexibility of protein structures. However, simulating protein flexibility poses significant challenges due to the complex dynamics of protein systems, requiring extensive computational resources and accurate modeling techniques. In response to these challenges, the CABS-flex method has been developed as an efficient modeling tool that combines coarse-grained simulations with all-atom detail.

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Identification of the mode of evolution in incomplete carbonate successions.

BMC Ecol Evol

August 2024

Faculty of Geosciences, Department of Earth Sciences, Utrecht University, Vening Meinesz building A, Princetonlaan 8A, Utrecht, 3584 CB, The Netherlands.

Background: The fossil record provides the unique opportunity to observe evolution over millions of years, but is known to be incomplete. While incompleteness varies spatially and is hard to estimate for empirical sections, computer simulations of geological processes can be used to examine the effects of the incompleteness in silico. We combine simulations of different modes of evolution (stasis, (un)biased random walks) with deposition of carbonate platforms strata to examine how well the mode of evolution can be recovered from fossil time series, and how test results vary between different positions in the carbonate platform and multiple stratigraphic architectures generated by different sea level curves.

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Article Synopsis
  • Researchers observed a phase transition from triclinic to monoclinic in a photoluminescent organo-gold(I) compound under high pressure using synchrotron diffraction techniques.
  • The transition begins at around 0.6 GPa, and a detailed structure of the new monoclinic phase was determined with advanced refinement methods.
  • The study highlights that rapid diffraction experiments can mistakenly indicate higher pressure levels for phase transitions due to the slow kinetics of the transformation process.
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A photocaged, pH-sensitive anion transporter with AND logic dual-stimuli activation.

Org Biomol Chem

September 2024

Faculty of Chemistry, Biological and Chemical Research Centre, University of Warsaw, Poland.

A pH-switchable anion transporter 1 was photocaged with two photolabile groups to enhance spatiotemporal control over its chloride transport activity. Simultaneous application of light irradiation and acidic pH restores the activity of 1, while either stimulus alone results in no or very low activity. The double activation strategy described herein has potential to yield more selectively cytotoxic anionophores for future medical applications.

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Nature has ingeniously developed specialized water transporters that effectively reject ions, including protons, while transporting water across membranes. These natural water channels, known as aquaporins (AQPs), have inspired the creation of Artificial Water Channels (AWCs). However, replicating superfast water transport with synthetic molecular structures that exclude salts and protons is a challenging task.

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Electrodeposition is a versatile method for synthesizing nanostructured films, but controlling the morphology of films containing two or more elements requires a detailed understanding of the deposition process. We used liquid cell transmission electron microscopy to follow the electrodeposition of PtNi nanoparticle films on a carbon electrode during cyclic voltammetry. These observations show that the film thickness increases with each cycle, and by the fourth cycle, branched and porous structures could be deposited.

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