Nutrient-based diet modifications impact on the gut microbiome of the Javan slow loris (Nycticebus javanicus).

Environment and diet are key factors which shape the microbiome of organisms. There is also a disparity between captive and wild animals of the same species, presumably because of the change in diet. Being able to reverse the microbiome to the wild type is thus particularly important for the reintroduction efforts of Critically Endangered animals.

National assessment of ecosystem services in Russia: Methodology and main problems.

The Project TEEB-Russia is the first attempt at a nation-wide assessment of ecosystem services (ES) in Russia. The result of the pilot phase of the project (2013-2015) was the "Prototype National Report on Ecosystem Services of Russia, Volume 1, Terrestrial Ecosystems Services". A methodology for ES assessment was developed with allowance for the current status of the national public statistics.

Characterization of Campylobacter jejuni, Campylobacter upsaliensis, and a novel Campylobacter sp. in a captive non-human primate zoological collection.

Background: The aim of this study was to longitudinally investigate the prevalence and characterization of Campylobacter spp. from non-human primates primate (NHP) with a history of endemic diarrhea housed at Como Park Zoo.

Methods: Fecal samples from 33 symptom-free NHP belonging to eight different species were collected weekly for 9 weeks.

Associations Between Nutrition, Gut Microbiome, and Health in A Novel Nonhuman Primate Model.

Red-shanked doucs (Pygathrix nemaeus) are endangered, foregut-fermenting colobine primates which are difficult to maintain in captivity. There are critical gaps in our understanding of their natural lifestyle, including dietary habits such as consumption of leaves, unripe fruit, flowers, seeds, and other plant parts. There is also a lack of understanding of enteric adaptations, including their unique microflora.

The gut microbiome of nonhuman primates: Lessons in ecology and evolution.

The mammalian gastrointestinal (GI) tract is home to trillions of bacteria that play a substantial role in host metabolism and immunity. While progress has been made in understanding the role that microbial communities play in human health and disease, much less attention has been given to host-associated microbiomes in nonhuman primates (NHPs). Here we review past and current research exploring the gut microbiome of NHPs.

Biogeography of Leptospira in wild animal communities inhabiting the insular ecosystem of the western Indian Ocean islands and neighboring Africa.

Understanding the processes driving parasite assemblages is particularly important in the context of zoonotic infectious diseases. Leptospirosis is a widespread zoonotic bacterial infection caused by pathogenic species of the genus Leptospira. Despite a wide range of animal hosts, information is still lacking on the factors shaping Leptospira diversity in wild animal communities, especially in regions, such as tropical insular ecosystems, with high host species richness and complex biogeographical patterns.

Out of Southern East Asia of the Brown Rat Revealed by Large-Scale Genome Sequencing.

The geographic origin and migration of the brown rat (Rattus norvegicus) remain subjects of considerable debate. In this study, we sequenced whole genomes of 110 wild brown rats with a diverse world-wide representation. We reveal that brown rats migrated out of southern East Asia, rather than northern Asia as formerly suggested, into the Middle East and then to Europe and Africa, thousands of years ago.

Patterns of seasonality and group membership characterize the gut microbiota in a longitudinal study of wild Verreaux's sifakas ().

The intestinal microbiota plays a major role in host development, metabolism, and health. To date, few longitudinal studies have investigated the causes and consequences of microbiota variation in wildlife, although such studies provide a comparative context for interpreting the adaptive significance of findings from studies on humans or captive animals. Here, we investigate the impact of seasonality, diet, group membership, sex, age, and reproductive state on gut microbiota composition in a wild population of group-living, frugi-folivorous primates, Verreaux's sifakas ().

Captivity humanizes the primate microbiome.

The primate gastrointestinal tract is home to trillions of bacteria, whose composition is associated with numerous metabolic, autoimmune, and infectious human diseases. Although there is increasing evidence that modern and Westernized societies are associated with dramatic loss of natural human gut microbiome diversity, the causes and consequences of such loss are challenging to study. Here we use nonhuman primates (NHPs) as a model system for studying the effects of emigration and lifestyle disruption on the human gut microbiome.

Spatially variable coevolution between a haemosporidian parasite and the MHC of a widely distributed passerine.

The environment shapes host-parasite interactions, but how environmental variation affects the diversity and composition of parasite-defense genes of hosts is unresolved. In vertebrates, the highly variable major histocompatibility complex (MHC) gene family plays an essential role in the adaptive immune system by recognizing pathogen infection and initiating the cellular immune response. Investigating MHC-parasite associations across heterogeneous landscapes may elucidate the role of spatially fluctuating selection in the maintenance of high levels of genetic variation at the MHC.

Variation in positively selected major histocompatibility complex class I loci in rufous-collared sparrows (Zonotrichia capensis).

The major histocompatibility complex (MHC) is a highly variable family of genes involved in parasite recognition and the initiation of adaptive immune system responses. Variation in MHC loci is maintained primarily through parasite-mediated selection or disassortative mate choice. To characterize MHC diversity of rufous-collared sparrows (Zonotrichia capensis), an abundant South American passerine, we examined allelic and nucleotide variation in MHC class I exon 3 using pyrosequencing.

Integrating landscape genomics and spatially explicit approaches to detect loci under selection in clinal populations.

Uncovering the genetic basis of adaptation hinges on the ability to detect loci under selection. However, population genomics outlier approaches to detect selected loci may be inappropriate for clinal populations or those with unclear population structure because they require that individuals be clustered into populations. An alternate approach, landscape genomics, uses individual-based approaches to detect loci under selection and reveal potential environmental drivers of selection.

Eco-evolutionary responses of Bromus tectorum to climate change: implications for biological invasions.

How plant populations, communities, and ecosystems respond to climate change is a critical focus in ecology today. The responses of introduced species may be especially rapid. Current models that incorporate temperature and precipitation suggest that future Bromus tectorum invasion risk is low for the Colorado Plateau.

Spatial patterns of avian malaria prevalence in Zonotrichia capensis on the western slope of the Peruvian Andes.

Environmental heterogeneity largely dictates the spatial distributions of parasites and therefore the susceptibility to infection of host populations. We surveyed avian malaria infections in Rufous-collared sparrows (Zonotrichia capensis) across replicated altitudinal and latitudinal transects along the western slope of the Peruvian Andes to assess geographic patterns of prevalence. We found malaria infection prevalence peaked at midelevations along all 3 altitudinal transects (x ≈ 2,733 m), with highest overall prevalence observed in the northern transect.

Paleoecoinformatics: applying geohistorical data to ecological questions.

Paleoecoinformatics, the development and use of paleoecological databases and tools, has a strong tradition of community support, and is rapidly growing as new tools bring new opportunities to advance understanding of ecological and evolutionary dynamics, from regional to global scales, and across the entire history of life on earth. Paleoecoinformatics occupies the intersection of ecoinformatics and geoinformatics. All face shared challenges, including developing frameworks to store heterogeneous and dynamic datasets, facilitating data contributions, linking heterogeneous data, and tracking improvements in data quality and scientific understanding.

Evaluating river water quality through land use analysis and N budget approaches in livestock farming areas.

This study was carried out to evaluate the quality of river water by analysis of land use in drainage basins and by estimating the N budgets. The drainage basins of Shibetsu River (Shibetsu area) and Bekkanbeushi River (Akkeshi area) in eastern Hokkaido, Japan were selected for a case study, and the evaluation of water quality was up-scaled to the regional level in Hokkaido by using the Arcview/GIS and statistical information. Water sampling was carried out in August 2001 and May 2002 in the Shibetsu and Akkeshi areas, respectively.